Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00048 and MPMX19_00049 overlap by 4 nucleotides MPMX19_00049 and MPMX19_00050 are separated by 27 nucleotides MPMX19_00050 and MPMX19_00051 are separated by 231 nucleotides MPMX19_00051 and MPMX19_00052 are separated by 76 nucleotides
MPMX19_00048: MPMX19_00048 - hypothetical protein, at 50,637 to 51,605
_00048
MPMX19_00049: MPMX19_00049 - hypothetical protein, at 51,602 to 52,165
_00049
MPMX19_00050: MPMX19_00050 - Pyridoxal phosphate homeostasis protein, at 52,193 to 52,873
_00050
MPMX19_00051: MPMX19_00051 - hypothetical protein, at 53,105 to 53,689
_00051
MPMX19_00052: MPMX19_00052 - hypothetical protein, at 53,766 to 54,854
_00052
Position (kb) 52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 51.339 kb on + strand, within MPMX19_00048 at 51.340 kb on - strand, within MPMX19_00048 at 51.340 kb on - strand, within MPMX19_00048 at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.546 kb on + strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.547 kb on - strand at 51.902 kb on + strand, within MPMX19_00049 at 51.902 kb on + strand, within MPMX19_00049 at 51.902 kb on + strand, within MPMX19_00049 at 51.902 kb on + strand, within MPMX19_00049 at 51.903 kb on - strand, within MPMX19_00049 at 51.903 kb on - strand, within MPMX19_00049 at 51.903 kb on - strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.968 kb on + strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 51.969 kb on - strand, within MPMX19_00049 at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.194 kb on + strand at 52.195 kb on - strand at 52.195 kb on - strand at 52.195 kb on - strand at 52.195 kb on - strand at 52.275 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.789 kb on + strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.790 kb on - strand, within MPMX19_00050 at 52.876 kb on + strand at 52.876 kb on + strand at 52.876 kb on + strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.877 kb on - strand at 52.906 kb on + strand at 52.907 kb on - strand at 52.907 kb on - strand at 52.907 kb on - strand at 52.907 kb on - strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.966 kb on + strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 52.967 kb on - strand at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.369 kb on + strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.370 kb on - strand, within MPMX19_00051 at 53.402 kb on + strand, within MPMX19_00051 at 53.402 kb on + strand, within MPMX19_00051 at 53.402 kb on + strand, within MPMX19_00051 at 53.403 kb on - strand, within MPMX19_00051 at 53.403 kb on - strand, within MPMX19_00051 at 53.501 kb on + strand, within MPMX19_00051 at 53.501 kb on + strand, within MPMX19_00051 at 53.501 kb on + strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.502 kb on - strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.597 kb on + strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.598 kb on - strand, within MPMX19_00051 at 53.687 kb on + strand at 53.687 kb on + strand at 53.687 kb on + strand at 53.687 kb on + strand at 53.688 kb on - strand at 53.688 kb on - strand at 53.688 kb on - strand at 53.688 kb on - strand at 53.742 kb on + strand at 53.814 kb on + strand at 53.815 kb on - strand at 53.815 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.840 kb on - strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.845 kb on + strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand at 53.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 51,339 + MPMX19_00048 0.72 -1.4 51,340 - MPMX19_00048 0.73 +0.1 51,340 - MPMX19_00048 0.73 +0.2 51,546 + -0.9 51,546 + +1.0 51,546 + -1.0 51,546 + -0.3 51,546 + +0.4 51,546 + -0.4 51,546 + +0.1 51,546 + -1.8 51,546 + -0.3 51,546 + -1.2 51,546 + -0.7 51,546 + -0.2 51,546 + -0.9 51,546 + -0.4 51,546 + +0.4 51,546 + +0.7 51,546 + -0.4 51,547 - -1.5 51,547 - -0.8 51,547 - -1.5 51,547 - -0.3 51,547 - -1.1 51,547 - +0.1 51,547 - +0.1 51,547 - +1.3 51,547 - -0.9 51,547 - +0.1 51,547 - -0.7 51,547 - +0.2 51,547 - -0.4 51,902 + MPMX19_00049 0.53 -0.4 51,902 + MPMX19_00049 0.53 -0.0 51,902 + MPMX19_00049 0.53 +0.9 51,902 + MPMX19_00049 0.53 +0.4 51,903 - MPMX19_00049 0.53 +1.6 51,903 - MPMX19_00049 0.53 -2.2 51,903 - MPMX19_00049 0.53 -0.8 51,968 + MPMX19_00049 0.65 -0.0 51,968 + MPMX19_00049 0.65 -0.0 51,968 + MPMX19_00049 0.65 -1.0 51,968 + MPMX19_00049 0.65 -0.2 51,969 - MPMX19_00049 0.65 -0.1 51,969 - MPMX19_00049 0.65 +0.7 51,969 - MPMX19_00049 0.65 +0.7 51,969 - MPMX19_00049 0.65 -0.4 51,969 - MPMX19_00049 0.65 -2.5 51,969 - MPMX19_00049 0.65 -0.9 51,969 - MPMX19_00049 0.65 +1.3 52,194 + +0.5 52,194 + -1.2 52,194 + -0.2 52,194 + -1.4 52,194 + -0.1 52,194 + +0.6 52,195 - +0.1 52,195 - -0.2 52,195 - +0.3 52,195 - +0.8 52,275 + MPMX19_00050 0.12 -0.4 52,789 + MPMX19_00050 0.88 -1.4 52,789 + MPMX19_00050 0.88 -0.8 52,789 + MPMX19_00050 0.88 -0.4 52,789 + MPMX19_00050 0.88 -0.8 52,789 + MPMX19_00050 0.88 -2.0 52,789 + MPMX19_00050 0.88 -1.3 52,790 - MPMX19_00050 0.88 -1.5 52,790 - MPMX19_00050 0.88 -0.4 52,790 - MPMX19_00050 0.88 -1.1 52,790 - MPMX19_00050 0.88 -0.7 52,790 - MPMX19_00050 0.88 -0.0 52,790 - MPMX19_00050 0.88 -0.9 52,876 + -0.1 52,876 + -0.3 52,876 + -1.1 52,877 - -0.2 52,877 - -0.2 52,877 - +0.1 52,877 - +0.4 52,877 - -0.8 52,877 - -1.4 52,906 + -0.4 52,907 - -0.2 52,907 - -0.0 52,907 - -1.4 52,907 - -0.9 52,966 + -1.1 52,966 + +1.3 52,966 + -0.9 52,966 + -0.2 52,966 + -1.4 52,966 + -0.2 52,966 + +0.1 52,966 + -0.0 52,966 + -0.7 52,966 + -1.1 52,967 - -2.1 52,967 - +0.6 52,967 - +0.3 52,967 - -0.6 52,967 - -0.3 52,967 - -0.4 52,967 - -0.0 52,967 - +0.3 52,967 - -1.0 52,967 - -0.0 52,967 - +0.4 52,967 - -0.8 53,369 + MPMX19_00051 0.45 -0.9 53,369 + MPMX19_00051 0.45 -0.4 53,369 + MPMX19_00051 0.45 -1.7 53,369 + MPMX19_00051 0.45 -0.4 53,369 + MPMX19_00051 0.45 -0.2 53,369 + MPMX19_00051 0.45 -2.0 53,369 + MPMX19_00051 0.45 -0.3 53,369 + MPMX19_00051 0.45 -0.4 53,370 - MPMX19_00051 0.45 +0.1 53,370 - MPMX19_00051 0.45 -1.9 53,370 - MPMX19_00051 0.45 -1.0 53,370 - MPMX19_00051 0.45 -1.1 53,370 - MPMX19_00051 0.45 -1.0 53,370 - MPMX19_00051 0.45 -0.8 53,370 - MPMX19_00051 0.45 -1.4 53,370 - MPMX19_00051 0.45 +0.3 53,370 - MPMX19_00051 0.45 -1.9 53,402 + MPMX19_00051 0.51 -0.4 53,402 + MPMX19_00051 0.51 -0.2 53,402 + MPMX19_00051 0.51 -0.4 53,403 - MPMX19_00051 0.51 +0.4 53,403 - MPMX19_00051 0.51 +0.1 53,501 + MPMX19_00051 0.68 +0.3 53,501 + MPMX19_00051 0.68 -0.4 53,501 + MPMX19_00051 0.68 -2.7 53,502 - MPMX19_00051 0.68 -1.2 53,502 - MPMX19_00051 0.68 -0.3 53,502 - MPMX19_00051 0.68 -0.3 53,502 - MPMX19_00051 0.68 +0.9 53,502 - MPMX19_00051 0.68 -1.0 53,502 - MPMX19_00051 0.68 -1.1 53,597 + MPMX19_00051 0.84 -0.4 53,597 + MPMX19_00051 0.84 -2.5 53,597 + MPMX19_00051 0.84 -1.8 53,597 + MPMX19_00051 0.84 -0.6 53,597 + MPMX19_00051 0.84 -0.1 53,597 + MPMX19_00051 0.84 -0.8 53,597 + MPMX19_00051 0.84 -2.4 53,598 - MPMX19_00051 0.84 -0.0 53,598 - MPMX19_00051 0.84 -0.1 53,598 - MPMX19_00051 0.84 +0.7 53,598 - MPMX19_00051 0.84 +0.0 53,687 + -0.7 53,687 + -2.0 53,687 + -0.7 53,687 + +0.3 53,688 - +1.4 53,688 - +0.1 53,688 - +0.4 53,688 - -0.0 53,742 + -0.2 53,814 + -0.4 53,815 - -1.6 53,815 - +1.1 53,840 - +0.3 53,840 - -1.3 53,840 - +0.1 53,840 - -0.4 53,840 - +0.4 53,845 + -0.6 53,845 + -0.6 53,845 + +0.2 53,845 + -1.2 53,845 + -0.4 53,845 + -1.0 53,845 + -0.9 53,845 + +1.2 53,845 + +0.2 53,846 - -0.9 53,846 - -0.1 53,846 - -1.1 53,846 - +0.7 53,846 - -0.0 53,846 - -1.0 53,846 - -0.8 53,846 - +1.0 53,846 - -0.6
Or see this region's nucleotide sequence