Strain Fitness in Methylophilus sp. DMC18 around GFF78

Experiment: D-Glucose and Methanol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose and Methanol (C)
86,999	-				+0.2
86,999	-				-0.9
87,016	+		GFF77	0.11	-0.4
87,016	+		GFF77	0.11	-0.6
87,016	+		GFF77	0.11	-1.4
87,016	+		GFF77	0.11	-1.6
87,017	-		GFF77	0.11	-1.6
87,017	-		GFF77	0.11	-0.2
87,017	-		GFF77	0.11	+0.5
87,017	-		GFF77	0.11	-0.4
87,017	-		GFF77	0.11	-0.6
87,017	-		GFF77	0.11	-0.7
87,017	-		GFF77	0.11	+0.5
87,078	+		GFF77	0.17	-1.0
87,079	-		GFF77	0.17	+0.6
87,095	+		GFF77	0.18	-0.4
87,095	+		GFF77	0.18	+0.1
87,096	-		GFF77	0.19	+0.5
87,096	-		GFF77	0.19	-0.5
87,096	-		GFF77	0.19	-0.9
87,096	-		GFF77	0.19	-0.6
87,136	+		GFF77	0.22	-0.6
87,136	+		GFF77	0.22	-0.4
87,362	+		GFF77	0.43	-0.6
87,457	+		GFF77	0.52	-0.0
87,457	+		GFF77	0.52	+0.5
87,458	-		GFF77	0.52	-1.8
87,458	-		GFF77	0.52	-2.0
87,543	-		GFF77	0.60	-1.4
87,592	+		GFF77	0.64	+1.0
87,592	+		GFF77	0.64	-0.1
87,592	+		GFF77	0.64	-1.4
87,593	-		GFF77	0.64	+0.8
87,652	+		GFF77	0.70	-0.5
87,652	+		GFF77	0.70	-0.4
87,652	+		GFF77	0.70	-1.0
87,653	-		GFF77	0.70	-0.4
87,653	-		GFF77	0.70	-1.0
87,660	+		GFF77	0.71	-0.1
87,660	+		GFF77	0.71	-0.4
87,661	-		GFF77	0.71	+0.1
87,664	+		GFF77	0.71	-1.5
87,703	-		GFF77	0.75	+0.2
87,727	+		GFF77	0.77	-0.3
87,727	+		GFF77	0.77	-1.4
87,728	-		GFF77	0.77	-1.8
87,728	-		GFF77	0.77	-0.0
87,728	-		GFF77	0.77	-1.6
87,728	-		GFF77	0.77	-1.4
87,792	+		GFF77	0.83	+0.1
87,792	+		GFF77	0.83	-1.8
87,792	+		GFF77	0.83	-0.0
87,792	+		GFF77	0.83	-0.2
87,792	+		GFF77	0.83	-0.2
87,792	+		GFF77	0.83	-0.9
87,793	-		GFF77	0.83	-1.4
87,793	-		GFF77	0.83	-1.4
87,794	+		GFF77	0.83	-1.6
87,794	+		GFF77	0.83	-1.7
87,794	+		GFF77	0.83	-0.0
87,794	+		GFF77	0.83	-1.3
87,794	+		GFF77	0.83	-0.2
87,794	+		GFF77	0.83	-1.4
87,794	+		GFF77	0.83	-1.6
87,794	+		GFF77	0.83	-2.2
87,795	-		GFF77	0.83	-0.8
87,795	-		GFF77	0.83	-0.4
87,795	-		GFF77	0.83	-1.5
87,795	-		GFF77	0.83	+0.4
87,795	-		GFF77	0.83	-0.8
87,795	-		GFF77	0.83	-0.0
87,795	-		GFF77	0.83	-0.7
87,823	+		GFF77	0.86	-0.4
87,823	+		GFF77	0.86	+0.6
87,823	+		GFF77	0.86	-0.6
87,823	+		GFF77	0.86	-0.6
87,824	-		GFF77	0.86	-0.6
87,824	-		GFF77	0.86	-0.6
87,824	-		GFF77	0.86	-0.0
87,824	-		GFF77	0.86	+0.2
87,963	-				-0.3
87,976	-				+0.6
88,010	+				+0.8
88,010	+				-0.8
88,011	-				-0.7
88,011	-				-1.2
88,012	+				-1.9
88,012	+				-0.9
88,012	+				-0.4
88,012	+				-1.1
88,012	+				+1.0
88,013	-				-0.1
88,013	-				-0.0
88,048	-		GFF78	0.11	+0.1
88,149	+		GFF78	0.26	-1.3
88,150	-		GFF78	0.26	+0.5
88,216	-		GFF78	0.37	-1.0
88,220	+		GFF78	0.37	-0.5
88,315	+		GFF78	0.52	-0.6
88,315	+		GFF78	0.52	-1.0
88,315	+		GFF78	0.52	+0.1
88,315	+		GFF78	0.52	-1.5
88,316	-		GFF78	0.52	+0.2
88,316	-		GFF78	0.52	-0.0
88,341	+		GFF78	0.56	-0.0
88,341	+		GFF78	0.56	+1.0
88,341	+		GFF78	0.56	-0.0
88,342	-		GFF78	0.56	-1.0
88,342	-		GFF78	0.56	-1.2
88,342	-		GFF78	0.56	-0.0
88,342	-		GFF78	0.56	-0.0
88,368	-		GFF78	0.60	+0.6
88,469	+		GFF78	0.76	-2.0
88,470	-		GFF78	0.76	+0.1
88,494	-		GFF78	0.79	-0.0
88,530	-		GFF78	0.85	-0.0
88,532	+		GFF78	0.85	-0.0
88,532	+		GFF78	0.85	+0.5
88,532	+		GFF78	0.85	-0.5
88,533	-		GFF78	0.85	-1.0
88,533	-		GFF78	0.85	-0.8
88,600	+				-1.0
88,625	-				-0.6
88,629	-				-1.0
88,639	+				-1.4
88,639	+				-0.0
88,639	+				-0.5
88,639	+				-1.1
88,639	+				+0.2
88,640	-				-1.4
88,643	+				-1.4
88,644	-				-1.2
88,657	+				-0.7
88,681	+				-1.8
88,681	+				-1.0
88,681	+				-1.0
88,682	-				-0.3
88,703	+		GFF79	0.12	-1.0
88,704	-		GFF79	0.12	+1.2
88,704	-		GFF79	0.12	+0.2
88,704	-		GFF79	0.12	+0.5
88,704	-		GFF79	0.12	-0.0
88,704	-		GFF79	0.12	-0.0
88,704	-		GFF79	0.12	-0.6
88,704	-		GFF79	0.12	-0.8
88,704	-		GFF79	0.12	-0.4
88,738	+		GFF79	0.18	-0.5
88,796	-		GFF79	0.29	+0.7
88,817	+		GFF79	0.33	-1.0
88,817	+		GFF79	0.33	-0.4
88,817	+		GFF79	0.33	-0.9
88,817	+		GFF79	0.33	-0.3
88,818	-		GFF79	0.33	-0.2
88,818	-		GFF79	0.33	-0.9
88,818	-		GFF79	0.33	+0.2
88,876	+		GFF79	0.44	-0.6
88,877	-		GFF79	0.45	-0.0
88,898	+		GFF79	0.48	-2.2
88,963	+		GFF79	0.61	-1.3
89,006	+		GFF79	0.69	-1.4
89,006	+		GFF79	0.69	-0.5
89,006	+		GFF79	0.69	+0.8
89,007	-		GFF79	0.69	+0.4
89,007	-		GFF79	0.69	-1.0
89,007	-		GFF79	0.69	-0.5
89,007	-		GFF79	0.69	-1.3
89,007	-		GFF79	0.69	-0.4
89,072	+		GFF79	0.81	-0.0
89,073	-		GFF79	0.82	-1.0
89,073	-		GFF79	0.82	-1.0
89,093	-		GFF79	0.85	-0.6
89,109	+		GFF79	0.88	+0.5
89,117	+				-0.6
89,118	-				-1.3
89,118	-				+0.3
89,118	-				+0.1
89,118	-				+0.5
89,118	-				+0.4
89,169	+				+0.1
89,169	+				+0.3
89,170	-				-1.4
89,170	-				+0.6
89,173	+				-1.6
89,173	+				-1.0
89,173	+				-0.0
89,173	+				-0.5
89,174	-				+1.8
89,174	-				-0.5
89,265	+				+0.1
89,265	+				-1.2
89,266	-				-0.0
89,266	-				-0.3
89,305	-		GFF80	0.13	-0.6
89,310	+		GFF80	0.14	-0.5
89,311	-		GFF80	0.14	-0.6
89,311	-		GFF80	0.14	+0.0
89,356	+		GFF80	0.20	-2.2
89,356	+		GFF80	0.20	-0.3
89,356	+		GFF80	0.20	-0.4
89,356	+		GFF80	0.20	-0.6
89,357	-		GFF80	0.20	+1.0
89,358	+		GFF80	0.20	-0.4
89,358	+		GFF80	0.20	-0.6
89,358	+		GFF80	0.20	-0.8
89,359	-		GFF80	0.20	-0.2
89,359	-		GFF80	0.20	-0.8
89,359	-		GFF80	0.20	-2.7
89,359	-		GFF80	0.20	-1.4
89,359	-		GFF80	0.20	-0.0
89,359	-		GFF80	0.20	-0.8
89,359	-		GFF80	0.20	-0.7
89,359	-		GFF80	0.20	-1.0
89,359	-		GFF80	0.20	-1.2
89,359	-		GFF80	0.20	-1.6
89,359	-		GFF80	0.20	-0.4
89,359	-		GFF80	0.20	+1.2
89,387	-		GFF80	0.24	+0.5
89,387	-		GFF80	0.24	-1.1
89,391	+		GFF80	0.25	-1.0
89,392	-		GFF80	0.25	-0.4
89,400	+		GFF80	0.26	-1.2
89,400	+		GFF80	0.26	-1.0
89,401	-		GFF80	0.26	-0.6
89,401	-		GFF80	0.26	-1.0
89,428	+		GFF80	0.30	-1.8
89,428	+		GFF80	0.30	-0.4
89,428	+		GFF80	0.30	-1.4
89,428	+		GFF80	0.30	+1.0
89,429	-		GFF80	0.30	-1.0
89,488	+		GFF80	0.38	-0.8
89,489	-		GFF80	0.38	-2.4
89,489	-		GFF80	0.38	-0.8
89,489	-		GFF80	0.38	-0.4
89,492	+		GFF80	0.39	-0.9
89,492	+		GFF80	0.39	-0.2
89,492	+		GFF80	0.39	+0.5
89,492	+		GFF80	0.39	-0.6
89,492	+		GFF80	0.39	-1.0
89,492	+		GFF80	0.39	-0.0
89,492	+		GFF80	0.39	-1.8
89,492	+		GFF80	0.39	+0.7
89,493	-		GFF80	0.39	-0.9
89,493	-		GFF80	0.39	+0.3
89,493	-		GFF80	0.39	-0.5
89,586	+		GFF80	0.52	+1.0
89,587	-		GFF80	0.52	-2.0
89,595	+		GFF80	0.53	-0.8
89,619	+		GFF80	0.56	-0.4
89,619	+		GFF80	0.56	+0.6