Strain Fitness in Methylophilus sp. DMC18 around GFF538

Experiment: D-Glucose and Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF536 and GFF537 overlap by 14 nucleotidesGFF537 and GFF538 are separated by 73 nucleotidesGFF538 and GFF539 are separated by 64 nucleotidesGFF539 and GFF540 are separated by 334 nucleotides GFF536 - hypothetical protein, at 593,160 to 594,296 GFF536 GFF537 - Flagellar biosynthetic protein FlhB, at 594,283 to 594,561 GFF537 GFF538 - hypothetical protein, at 594,635 to 596,230 GFF538 GFF539 - Flagellar hook-basal body complex protein FliE, at 596,295 to 596,660 GFF539 GFF540 - Flagellar M-ring protein, at 596,995 to 598,659 GFF540 Position (kb) 594 595 596 597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 593.659 kb on + strand, within GFF536at 593.659 kb on + strand, within GFF536at 593.660 kb on - strand, within GFF536at 593.660 kb on - strand, within GFF536at 593.820 kb on + strand, within GFF536at 593.821 kb on - strand, within GFF536at 593.821 kb on - strand, within GFF536at 593.872 kb on + strand, within GFF536at 593.932 kb on + strand, within GFF536at 593.932 kb on + strand, within GFF536at 593.933 kb on - strand, within GFF536at 594.049 kb on + strand, within GFF536at 594.106 kb on + strand, within GFF536at 594.195 kb on - strandat 594.283 kb on - strandat 594.301 kb on + strandat 594.301 kb on + strandat 594.302 kb on - strandat 594.302 kb on - strandat 594.302 kb on - strandat 594.303 kb on + strandat 594.304 kb on - strandat 594.328 kb on + strand, within GFF537at 594.329 kb on - strand, within GFF537at 594.422 kb on - strand, within GFF537at 594.422 kb on - strand, within GFF537at 594.480 kb on + strand, within GFF537at 594.497 kb on - strand, within GFF537at 594.529 kb on + strand, within GFF537at 594.529 kb on + strand, within GFF537at 594.529 kb on + strand, within GFF537at 594.530 kb on - strand, within GFF537at 594.530 kb on - strand, within GFF537at 594.530 kb on - strand, within GFF537at 594.595 kb on + strandat 594.595 kb on + strandat 594.596 kb on - strandat 594.596 kb on - strandat 594.682 kb on + strandat 594.682 kb on + strandat 594.683 kb on - strandat 594.683 kb on - strandat 594.735 kb on + strandat 594.789 kb on - strandat 594.841 kb on + strand, within GFF538at 594.842 kb on - strand, within GFF538at 595.124 kb on + strand, within GFF538at 595.124 kb on + strand, within GFF538at 595.124 kb on + strand, within GFF538at 595.124 kb on + strand, within GFF538at 595.125 kb on - strand, within GFF538at 595.125 kb on - strand, within GFF538at 595.125 kb on - strand, within GFF538at 595.145 kb on + strand, within GFF538at 595.145 kb on + strand, within GFF538at 595.145 kb on + strand, within GFF538at 595.145 kb on + strand, within GFF538at 595.146 kb on - strand, within GFF538at 595.146 kb on - strand, within GFF538at 595.146 kb on - strand, within GFF538at 595.146 kb on - strand, within GFF538at 595.192 kb on + strand, within GFF538at 595.192 kb on + strand, within GFF538at 595.192 kb on + strand, within GFF538at 595.192 kb on + strand, within GFF538at 595.193 kb on - strand, within GFF538at 595.194 kb on + strand, within GFF538at 595.195 kb on - strand, within GFF538at 595.195 kb on - strand, within GFF538at 595.195 kb on - strand, within GFF538at 595.195 kb on - strand, within GFF538at 595.221 kb on + strand, within GFF538at 595.227 kb on + strand, within GFF538at 595.227 kb on + strand, within GFF538at 595.227 kb on + strand, within GFF538at 595.228 kb on - strand, within GFF538at 595.260 kb on - strand, within GFF538at 595.260 kb on - strand, within GFF538at 595.315 kb on + strand, within GFF538at 595.315 kb on + strand, within GFF538at 595.361 kb on - strand, within GFF538at 595.405 kb on + strand, within GFF538at 595.406 kb on - strand, within GFF538at 595.503 kb on + strand, within GFF538at 595.503 kb on + strand, within GFF538at 595.504 kb on - strand, within GFF538at 595.644 kb on + strand, within GFF538at 595.645 kb on - strand, within GFF538at 595.645 kb on - strand, within GFF538at 595.660 kb on + strand, within GFF538at 595.666 kb on - strand, within GFF538at 595.666 kb on - strand, within GFF538at 595.666 kb on - strand, within GFF538at 595.707 kb on + strand, within GFF538at 595.745 kb on + strand, within GFF538at 595.745 kb on + strand, within GFF538at 595.764 kb on - strand, within GFF538at 595.767 kb on - strand, within GFF538at 595.767 kb on - strand, within GFF538at 595.792 kb on - strand, within GFF538at 595.792 kb on - strand, within GFF538at 595.869 kb on - strand, within GFF538at 595.898 kb on + strand, within GFF538at 595.970 kb on - strand, within GFF538at 596.138 kb on - strandat 596.153 kb on + strandat 596.202 kb on - strandat 596.249 kb on - strandat 596.287 kb on - strandat 596.290 kb on + strandat 596.290 kb on + strandat 596.291 kb on - strandat 596.296 kb on + strandat 596.297 kb on - strandat 596.306 kb on + strandat 596.306 kb on + strandat 596.352 kb on + strand, within GFF539at 596.352 kb on + strand, within GFF539at 596.352 kb on + strand, within GFF539at 596.352 kb on + strand, within GFF539at 596.353 kb on - strand, within GFF539at 596.353 kb on - strand, within GFF539at 596.353 kb on - strand, within GFF539at 596.353 kb on - strand, within GFF539at 596.508 kb on - strand, within GFF539at 596.508 kb on - strand, within GFF539at 596.660 kb on + strandat 596.660 kb on + strandat 596.660 kb on + strandat 596.660 kb on + strandat 596.660 kb on + strandat 596.660 kb on + strandat 596.661 kb on - strandat 596.661 kb on - strandat 596.661 kb on - strandat 596.661 kb on - strandat 596.661 kb on - strandat 596.661 kb on - strandat 596.681 kb on + strandat 596.682 kb on - strandat 596.732 kb on + strandat 596.733 kb on - strandat 596.775 kb on - strandat 596.784 kb on + strandat 596.784 kb on + strandat 596.817 kb on + strandat 596.917 kb on + strandat 596.917 kb on + strandat 596.917 kb on + strandat 596.917 kb on + strandat 596.918 kb on - strandat 596.918 kb on - strandat 596.918 kb on - strandat 596.918 kb on - strandat 596.921 kb on + strandat 596.921 kb on + strandat 596.921 kb on + strandat 596.924 kb on + strandat 596.924 kb on + strandat 596.925 kb on - strandat 596.925 kb on - strandat 596.957 kb on + strandat 596.960 kb on + strandat 596.960 kb on + strandat 596.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C)
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593,659 + GFF536 0.44 -1.0
593,659 + GFF536 0.44 -0.8
593,660 - GFF536 0.44 -1.2
593,660 - GFF536 0.44 +0.3
593,820 + GFF536 0.58 -0.3
593,821 - GFF536 0.58 -0.5
593,821 - GFF536 0.58 -1.1
593,872 + GFF536 0.63 -0.1
593,932 + GFF536 0.68 -2.1
593,932 + GFF536 0.68 -1.5
593,933 - GFF536 0.68 -1.9
594,049 + GFF536 0.78 -1.8
594,106 + GFF536 0.83 -1.5
594,195 - -0.2
594,283 - -2.2
594,301 + -0.9
594,301 + -1.1
594,302 - -0.9
594,302 - -1.5
594,302 - +0.0
594,303 + -1.5
594,304 - -1.9
594,328 + GFF537 0.16 +0.5
594,329 - GFF537 0.16 -0.6
594,422 - GFF537 0.50 +0.1
594,422 - GFF537 0.50 -1.1
594,480 + GFF537 0.71 -3.9
594,497 - GFF537 0.77 -1.7
594,529 + GFF537 0.88 +0.1
594,529 + GFF537 0.88 +0.3
594,529 + GFF537 0.88 -0.7
594,530 - GFF537 0.89 +0.4
594,530 - GFF537 0.89 +0.4
594,530 - GFF537 0.89 -0.7
594,595 + +0.2
594,595 + -1.1
594,596 - +0.2
594,596 - -2.6
594,682 + -1.1
594,682 + -0.7
594,683 - -0.1
594,683 - -0.6
594,735 + -0.1
594,789 - +0.1
594,841 + GFF538 0.13 -2.1
594,842 - GFF538 0.13 -0.5
595,124 + GFF538 0.31 -3.0
595,124 + GFF538 0.31 -0.1
595,124 + GFF538 0.31 -0.3
595,124 + GFF538 0.31 +0.1
595,125 - GFF538 0.31 -0.4
595,125 - GFF538 0.31 -0.5
595,125 - GFF538 0.31 -1.1
595,145 + GFF538 0.32 -2.2
595,145 + GFF538 0.32 -0.5
595,145 + GFF538 0.32 +2.3
595,145 + GFF538 0.32 -0.4
595,146 - GFF538 0.32 +0.1
595,146 - GFF538 0.32 -0.3
595,146 - GFF538 0.32 -0.1
595,146 - GFF538 0.32 -0.4
595,192 + GFF538 0.35 -0.4
595,192 + GFF538 0.35 +1.2
595,192 + GFF538 0.35 -1.5
595,192 + GFF538 0.35 -0.5
595,193 - GFF538 0.35 -0.8
595,194 + GFF538 0.35 -0.1
595,195 - GFF538 0.35 -0.1
595,195 - GFF538 0.35 +0.7
595,195 - GFF538 0.35 -0.5
595,195 - GFF538 0.35 -0.5
595,221 + GFF538 0.37 +0.4
595,227 + GFF538 0.37 -0.5
595,227 + GFF538 0.37 -0.5
595,227 + GFF538 0.37 -1.1
595,228 - GFF538 0.37 -0.1
595,260 - GFF538 0.39 -1.4
595,260 - GFF538 0.39 -1.3
595,315 + GFF538 0.43 -1.3
595,315 + GFF538 0.43 -1.2
595,361 - GFF538 0.45 -0.3
595,405 + GFF538 0.48 -0.6
595,406 - GFF538 0.48 -0.1
595,503 + GFF538 0.54 -0.5
595,503 + GFF538 0.54 +0.1
595,504 - GFF538 0.54 -1.7
595,644 + GFF538 0.63 -1.7
595,645 - GFF538 0.63 +0.6
595,645 - GFF538 0.63 -1.1
595,660 + GFF538 0.64 -0.2
595,666 - GFF538 0.65 -1.5
595,666 - GFF538 0.65 -0.9
595,666 - GFF538 0.65 -0.9
595,707 + GFF538 0.67 -0.1
595,745 + GFF538 0.70 -0.1
595,745 + GFF538 0.70 -0.5
595,764 - GFF538 0.71 -0.6
595,767 - GFF538 0.71 -1.0
595,767 - GFF538 0.71 +0.3
595,792 - GFF538 0.72 -1.5
595,792 - GFF538 0.72 -0.1
595,869 - GFF538 0.77 -0.4
595,898 + GFF538 0.79 -1.1
595,970 - GFF538 0.84 -1.1
596,138 - -1.3
596,153 + +0.4
596,202 - -1.3
596,249 - -1.1
596,287 - -1.5
596,290 + +0.4
596,290 + -0.6
596,291 - -1.6
596,296 + +0.3
596,297 - -0.3
596,306 + -0.6
596,306 + -0.5
596,352 + GFF539 0.16 +0.1
596,352 + GFF539 0.16 -2.1
596,352 + GFF539 0.16 +0.7
596,352 + GFF539 0.16 -0.1
596,353 - GFF539 0.16 -0.1
596,353 - GFF539 0.16 -0.4
596,353 - GFF539 0.16 -0.3
596,353 - GFF539 0.16 +0.3
596,508 - GFF539 0.58 -1.9
596,508 - GFF539 0.58 -0.7
596,660 + -1.1
596,660 + +0.0
596,660 + -0.3
596,660 + -1.6
596,660 + -1.9
596,660 + -0.3
596,661 - +1.0
596,661 - +0.5
596,661 - -1.5
596,661 - +0.4
596,661 - -0.3
596,661 - -0.9
596,681 + -2.3
596,682 - -0.7
596,732 + -1.1
596,733 - -0.3
596,775 - +0.4
596,784 + -1.9
596,784 + -0.5
596,817 + -0.2
596,917 + -0.7
596,917 + +0.1
596,917 + -1.5
596,917 + -1.5
596,918 - +0.5
596,918 - -0.4
596,918 - -1.1
596,918 - +1.1
596,921 + -1.0
596,921 + +0.1
596,921 + +0.9
596,924 + -1.1
596,924 + -0.4
596,925 - +0.5
596,925 - -1.5
596,957 + -1.1
596,960 + -1.6
596,960 + -0.4
596,961 - +0.2

Or see this region's nucleotide sequence