Experiment: D-Glucose and Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2170 and GFF2171 are separated by 87 nucleotides GFF2171 and GFF2172 are separated by 185 nucleotides GFF2172 and GFF2173 are separated by 65 nucleotides
GFF2170 - Catalase-related peroxidase, at 219,505 to 220,497
GFF2170
GFF2171 - Peptide methionine sulfoxide reductase MsrB, at 220,585 to 221,040
GFF2171
GFF2172 - hypothetical protein, at 221,226 to 222,146
GFF2172
GFF2173 - D-amino acid dehydrogenase 1, at 222,212 to 223,483
GFF2173
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1 at 220.240 kb on + strand, within GFF2170 at 220.241 kb on - strand, within GFF2170 at 220.242 kb on + strand, within GFF2170 at 220.243 kb on - strand, within GFF2170 at 220.243 kb on - strand, within GFF2170 at 220.243 kb on - strand, within GFF2170 at 220.247 kb on + strand, within GFF2170 at 220.248 kb on + strand, within GFF2170 at 220.248 kb on - strand, within GFF2170 at 220.248 kb on - strand, within GFF2170 at 220.347 kb on + strand, within GFF2170 at 220.347 kb on + strand, within GFF2170 at 220.347 kb on + strand, within GFF2170 at 220.348 kb on - strand, within GFF2170 at 220.365 kb on + strand, within GFF2170 at 220.365 kb on + strand, within GFF2170 at 220.365 kb on + strand, within GFF2170 at 220.365 kb on + strand, within GFF2170 at 220.365 kb on + strand, within GFF2170 at 220.366 kb on - strand, within GFF2170 at 220.366 kb on - strand, within GFF2170 at 220.366 kb on - strand, within GFF2170 at 220.425 kb on + strand at 220.438 kb on - strand at 220.438 kb on - strand at 220.462 kb on + strand at 220.462 kb on + strand at 220.463 kb on - strand at 220.463 kb on - strand at 220.463 kb on - strand at 220.474 kb on + strand at 220.474 kb on + strand at 220.475 kb on - strand at 220.495 kb on + strand at 220.496 kb on - strand at 220.496 kb on - strand at 220.496 kb on - strand at 220.496 kb on - strand at 220.496 kb on - strand at 220.501 kb on + strand at 220.502 kb on - strand at 220.502 kb on - strand at 220.586 kb on + strand at 220.586 kb on + strand at 220.586 kb on + strand at 220.587 kb on - strand at 220.587 kb on - strand at 220.617 kb on + strand at 220.617 kb on + strand at 220.702 kb on + strand, within GFF2171 at 220.722 kb on + strand, within GFF2171 at 220.733 kb on + strand, within GFF2171 at 220.734 kb on - strand, within GFF2171 at 220.734 kb on - strand, within GFF2171 at 220.736 kb on + strand, within GFF2171 at 220.736 kb on + strand, within GFF2171 at 220.736 kb on + strand, within GFF2171 at 220.736 kb on + strand, within GFF2171 at 220.737 kb on - strand, within GFF2171 at 220.737 kb on - strand, within GFF2171 at 220.737 kb on - strand, within GFF2171 at 220.807 kb on - strand, within GFF2171 at 220.903 kb on + strand, within GFF2171 at 220.903 kb on + strand, within GFF2171 at 220.904 kb on - strand, within GFF2171 at 220.904 kb on - strand, within GFF2171 at 220.904 kb on - strand, within GFF2171 at 220.904 kb on - strand, within GFF2171 at 220.904 kb on - strand, within GFF2171 at 220.912 kb on - strand, within GFF2171 at 221.011 kb on + strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.012 kb on - strand at 221.013 kb on + strand at 221.013 kb on + strand at 221.013 kb on + strand at 221.014 kb on - strand at 221.014 kb on - strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.025 kb on + strand at 221.026 kb on - strand at 221.026 kb on - strand at 221.026 kb on - strand at 221.026 kb on - strand at 221.026 kb on - strand at 221.026 kb on - strand at 221.026 kb on - strand at 221.035 kb on - strand at 221.068 kb on + strand at 221.069 kb on - strand at 221.069 kb on - strand at 221.093 kb on + strand at 221.094 kb on - strand at 221.114 kb on - strand at 221.114 kb on - strand at 221.135 kb on + strand at 221.172 kb on - strand at 221.172 kb on - strand at 221.172 kb on - strand at 221.188 kb on - strand at 221.201 kb on + strand at 221.202 kb on - strand at 221.234 kb on + strand at 221.235 kb on - strand at 221.282 kb on + strand at 221.283 kb on - strand at 221.283 kb on - strand at 221.349 kb on + strand, within GFF2172 at 221.351 kb on + strand, within GFF2172 at 221.351 kb on + strand, within GFF2172 at 221.351 kb on + strand, within GFF2172 at 221.441 kb on + strand, within GFF2172 at 221.441 kb on + strand, within GFF2172 at 221.441 kb on + strand, within GFF2172 at 221.452 kb on - strand, within GFF2172 at 221.492 kb on + strand, within GFF2172 at 221.492 kb on + strand, within GFF2172 at 221.492 kb on + strand, within GFF2172 at 221.530 kb on + strand, within GFF2172 at 221.585 kb on + strand, within GFF2172 at 221.586 kb on - strand, within GFF2172 at 221.609 kb on - strand, within GFF2172 at 221.679 kb on + strand, within GFF2172 at 221.679 kb on + strand, within GFF2172 at 221.680 kb on - strand, within GFF2172 at 221.680 kb on - strand, within GFF2172 at 221.680 kb on - strand, within GFF2172 at 221.680 kb on - strand, within GFF2172 at 221.680 kb on - strand, within GFF2172 at 221.713 kb on + strand, within GFF2172 at 221.714 kb on - strand, within GFF2172 at 221.714 kb on - strand, within GFF2172 at 221.768 kb on + strand, within GFF2172 at 221.769 kb on - strand, within GFF2172 at 221.769 kb on - strand, within GFF2172 at 221.770 kb on + strand, within GFF2172 at 221.770 kb on + strand, within GFF2172 at 221.770 kb on + strand, within GFF2172 at 221.770 kb on + strand, within GFF2172 at 221.771 kb on - strand, within GFF2172 at 221.771 kb on - strand, within GFF2172 at 221.771 kb on - strand, within GFF2172 at 221.771 kb on - strand, within GFF2172 at 221.771 kb on - strand, within GFF2172 at 221.771 kb on - strand, within GFF2172 at 221.778 kb on - strand, within GFF2172 at 221.863 kb on - strand, within GFF2172 at 221.869 kb on + strand, within GFF2172 at 221.870 kb on - strand, within GFF2172 at 221.870 kb on - strand, within GFF2172 at 221.891 kb on + strand, within GFF2172 at 221.891 kb on + strand, within GFF2172 at 221.928 kb on - strand, within GFF2172 at 221.970 kb on + strand, within GFF2172 at 221.970 kb on + strand, within GFF2172 at 221.970 kb on + strand, within GFF2172 at 221.970 kb on + strand, within GFF2172 at 221.970 kb on + strand, within GFF2172 at 221.971 kb on - strand, within GFF2172 at 221.971 kb on - strand, within GFF2172 at 221.971 kb on - strand, within GFF2172 at 221.971 kb on - strand, within GFF2172 at 221.971 kb on - strand, within GFF2172 at 221.971 kb on - strand, within GFF2172 at 221.972 kb on + strand, within GFF2172 at 221.973 kb on - strand, within GFF2172 at 222.067 kb on + strand at 222.067 kb on + strand at 222.068 kb on - strand at 222.137 kb on - strand at 222.137 kb on - strand at 222.137 kb on - strand at 222.144 kb on + strand at 222.144 kb on + strand at 222.144 kb on + strand at 222.144 kb on + strand at 222.144 kb on + strand at 222.145 kb on - strand at 222.145 kb on - strand at 222.145 kb on - strand at 222.145 kb on - strand at 222.145 kb on - strand at 222.272 kb on + strand at 222.467 kb on + strand, within GFF2173 at 222.468 kb on - strand, within GFF2173 at 222.507 kb on - strand, within GFF2173 at 222.579 kb on + strand, within GFF2173 at 222.579 kb on + strand, within GFF2173 at 222.579 kb on + strand, within GFF2173 at 222.580 kb on - strand, within GFF2173 at 222.580 kb on - strand, within GFF2173 at 222.580 kb on - strand, within GFF2173 at 222.645 kb on + strand, within GFF2173 at 222.653 kb on + strand, within GFF2173 at 222.726 kb on + strand, within GFF2173 at 222.726 kb on + strand, within GFF2173 at 222.726 kb on + strand, within GFF2173 at 222.726 kb on + strand, within GFF2173 at 222.726 kb on + strand, within GFF2173 at 222.727 kb on - strand, within GFF2173 at 222.727 kb on - strand, within GFF2173 at 222.727 kb on - strand, within GFF2173 at 222.727 kb on - strand, within GFF2173 at 222.743 kb on + strand, within GFF2173 at 222.743 kb on + strand, within GFF2173 at 222.743 kb on + strand, within GFF2173 at 222.774 kb on - strand, within GFF2173 at 222.804 kb on - strand, within GFF2173 at 222.812 kb on + strand, within GFF2173 at 222.812 kb on + strand, within GFF2173 at 222.812 kb on + strand, within GFF2173 at 222.812 kb on + strand, within GFF2173 at 222.813 kb on + strand, within GFF2173 at 222.813 kb on - strand, within GFF2173 at 222.813 kb on - strand, within GFF2173 at 222.813 kb on - strand, within GFF2173 at 222.813 kb on - strand, within GFF2173 at 222.813 kb on - strand, within GFF2173 at 222.813 kb on - strand, within GFF2173 at 222.874 kb on + strand, within GFF2173 at 222.878 kb on + strand, within GFF2173 at 222.878 kb on + strand, within GFF2173 at 222.878 kb on + strand, within GFF2173 at 222.879 kb on - strand, within GFF2173 at 222.879 kb on - strand, within GFF2173 at 222.879 kb on - strand, within GFF2173 at 222.879 kb on - strand, within GFF2173 at 222.879 kb on - strand, within GFF2173 at 222.879 kb on - strand, within GFF2173 at 222.912 kb on + strand, within GFF2173 at 222.912 kb on + strand, within GFF2173 at 222.912 kb on + strand, within GFF2173 at 222.912 kb on + strand, within GFF2173 at 222.912 kb on + strand, within GFF2173 at 222.913 kb on - strand, within GFF2173 at 222.913 kb on - strand, within GFF2173 at 222.913 kb on - strand, within GFF2173 at 222.938 kb on + strand, within GFF2173 at 222.938 kb on + strand, within GFF2173 at 222.939 kb on - strand, within GFF2173 at 222.939 kb on - strand, within GFF2173 at 222.965 kb on + strand, within GFF2173 at 223.016 kb on + strand, within GFF2173 at 223.016 kb on + strand, within GFF2173 at 223.017 kb on - strand, within GFF2173 at 223.024 kb on + strand, within GFF2173 at 223.064 kb on + strand, within GFF2173 at 223.065 kb on - strand, within GFF2173 at 223.070 kb on + strand, within GFF2173 at 223.070 kb on + strand, within GFF2173 at 223.070 kb on + strand, within GFF2173 at 223.071 kb on - strand, within GFF2173 at 223.071 kb on - strand, within GFF2173 at 223.071 kb on - strand, within GFF2173 at 223.071 kb on - strand, within GFF2173
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C) remove 220,240 + GFF2170 0.74 -1.2 220,241 - GFF2170 0.74 -1.0 220,242 + GFF2170 0.74 +0.5 220,243 - GFF2170 0.74 -0.9 220,243 - GFF2170 0.74 +0.6 220,243 - GFF2170 0.74 -0.6 220,247 + GFF2170 0.75 -2.7 220,248 + GFF2170 0.75 -0.2 220,248 - GFF2170 0.75 -1.2 220,248 - GFF2170 0.75 -0.5 220,347 + GFF2170 0.85 -1.3 220,347 + GFF2170 0.85 -1.1 220,347 + GFF2170 0.85 -0.4 220,348 - GFF2170 0.85 -0.9 220,365 + GFF2170 0.87 -1.0 220,365 + GFF2170 0.87 +0.5 220,365 + GFF2170 0.87 -0.0 220,365 + GFF2170 0.87 -1.4 220,365 + GFF2170 0.87 -1.1 220,366 - GFF2170 0.87 +0.3 220,366 - GFF2170 0.87 -0.7 220,366 - GFF2170 0.87 -0.9 220,425 + -0.7 220,438 - -0.8 220,438 - -1.2 220,462 + +0.1 220,462 + -1.3 220,463 - +0.3 220,463 - -0.5 220,463 - -1.2 220,474 + +0.1 220,474 + +0.2 220,475 - -0.9 220,495 + -0.1 220,496 - -0.9 220,496 - -0.9 220,496 - -1.0 220,496 - -0.2 220,496 - -0.2 220,501 + -0.2 220,502 - +0.1 220,502 - -0.9 220,586 + -1.8 220,586 + -0.9 220,586 + -0.9 220,587 - -0.6 220,587 - +0.1 220,617 + -0.8 220,617 + -0.7 220,702 + GFF2171 0.26 -0.7 220,722 + GFF2171 0.30 -0.5 220,733 + GFF2171 0.32 -0.2 220,734 - GFF2171 0.33 -1.5 220,734 - GFF2171 0.33 +0.4 220,736 + GFF2171 0.33 -1.2 220,736 + GFF2171 0.33 +0.3 220,736 + GFF2171 0.33 -1.6 220,736 + GFF2171 0.33 +0.7 220,737 - GFF2171 0.33 -1.9 220,737 - GFF2171 0.33 +0.3 220,737 - GFF2171 0.33 -0.8 220,807 - GFF2171 0.49 -0.1 220,903 + GFF2171 0.70 -1.7 220,903 + GFF2171 0.70 +0.1 220,904 - GFF2171 0.70 -0.5 220,904 - GFF2171 0.70 -0.4 220,904 - GFF2171 0.70 +0.2 220,904 - GFF2171 0.70 -1.9 220,904 - GFF2171 0.70 +0.3 220,912 - GFF2171 0.72 -0.7 221,011 + -1.1 221,012 - -1.2 221,012 - -1.2 221,012 - -0.9 221,012 - -1.2 221,012 - -0.6 221,012 - +0.5 221,012 - -0.9 221,012 - -0.6 221,012 - -0.4 221,013 + -1.6 221,013 + -1.2 221,013 + +0.3 221,014 - -0.2 221,014 - -0.2 221,025 + +0.1 221,025 + -0.1 221,025 + +1.7 221,025 + -0.7 221,025 + -0.9 221,025 + -1.5 221,025 + -0.4 221,025 + -0.9 221,025 + -0.5 221,026 - -0.8 221,026 - -0.4 221,026 - +0.8 221,026 - -0.9 221,026 - +0.3 221,026 - -0.5 221,026 - -0.9 221,035 - -0.7 221,068 + +0.3 221,069 - +0.3 221,069 - -0.3 221,093 + +0.3 221,094 - +0.1 221,114 - +0.0 221,114 - +0.1 221,135 + +1.3 221,172 - -0.4 221,172 - -0.1 221,172 - +0.8 221,188 - -0.9 221,201 + -0.2 221,202 - -1.9 221,234 + -0.6 221,235 - -0.7 221,282 + +0.4 221,283 - -0.9 221,283 - +0.7 221,349 + GFF2172 0.13 -0.1 221,351 + GFF2172 0.14 -0.5 221,351 + GFF2172 0.14 -1.1 221,351 + GFF2172 0.14 +0.1 221,441 + GFF2172 0.23 -1.1 221,441 + GFF2172 0.23 +0.2 221,441 + GFF2172 0.23 -0.6 221,452 - GFF2172 0.25 -0.1 221,492 + GFF2172 0.29 -1.2 221,492 + GFF2172 0.29 +0.2 221,492 + GFF2172 0.29 +0.7 221,530 + GFF2172 0.33 -1.2 221,585 + GFF2172 0.39 +0.3 221,586 - GFF2172 0.39 +0.1 221,609 - GFF2172 0.42 -0.4 221,679 + GFF2172 0.49 -0.2 221,679 + GFF2172 0.49 -0.5 221,680 - GFF2172 0.49 -0.8 221,680 - GFF2172 0.49 +0.7 221,680 - GFF2172 0.49 -1.2 221,680 - GFF2172 0.49 -1.0 221,680 - GFF2172 0.49 -0.5 221,713 + GFF2172 0.53 -1.5 221,714 - GFF2172 0.53 -0.6 221,714 - GFF2172 0.53 +0.6 221,768 + GFF2172 0.59 -0.2 221,769 - GFF2172 0.59 +0.2 221,769 - GFF2172 0.59 -0.2 221,770 + GFF2172 0.59 -0.7 221,770 + GFF2172 0.59 -0.4 221,770 + GFF2172 0.59 -0.1 221,770 + GFF2172 0.59 -0.1 221,771 - GFF2172 0.59 -0.0 221,771 - GFF2172 0.59 +1.1 221,771 - GFF2172 0.59 -1.8 221,771 - GFF2172 0.59 +0.1 221,771 - GFF2172 0.59 -2.5 221,771 - GFF2172 0.59 -2.5 221,778 - GFF2172 0.60 +0.1 221,863 - GFF2172 0.69 -0.4 221,869 + GFF2172 0.70 -0.1 221,870 - GFF2172 0.70 +0.3 221,870 - GFF2172 0.70 -0.8 221,891 + GFF2172 0.72 -0.4 221,891 + GFF2172 0.72 -0.9 221,928 - GFF2172 0.76 -0.3 221,970 + GFF2172 0.81 -0.9 221,970 + GFF2172 0.81 -0.2 221,970 + GFF2172 0.81 -1.9 221,970 + GFF2172 0.81 +0.1 221,970 + GFF2172 0.81 -0.3 221,971 - GFF2172 0.81 -0.9 221,971 - GFF2172 0.81 +0.1 221,971 - GFF2172 0.81 +0.5 221,971 - GFF2172 0.81 -1.6 221,971 - GFF2172 0.81 -1.7 221,971 - GFF2172 0.81 -1.2 221,972 + GFF2172 0.81 -0.5 221,973 - GFF2172 0.81 -1.5 222,067 + -0.2 222,067 + -1.7 222,068 - +0.1 222,137 - +0.8 222,137 - -0.1 222,137 - -0.9 222,144 + -1.9 222,144 + +0.1 222,144 + -0.0 222,144 + +0.7 222,144 + -0.2 222,145 - +0.1 222,145 - -0.3 222,145 - +0.1 222,145 - -0.2 222,145 - +0.1 222,272 + -0.5 222,467 + GFF2173 0.20 +0.1 222,468 - GFF2173 0.20 -0.9 222,507 - GFF2173 0.23 +1.1 222,579 + GFF2173 0.29 +0.5 222,579 + GFF2173 0.29 +0.3 222,579 + GFF2173 0.29 -1.5 222,580 - GFF2173 0.29 -0.6 222,580 - GFF2173 0.29 +0.2 222,580 - GFF2173 0.29 -0.4 222,645 + GFF2173 0.34 -1.8 222,653 + GFF2173 0.35 -0.9 222,726 + GFF2173 0.40 -0.7 222,726 + GFF2173 0.40 +0.2 222,726 + GFF2173 0.40 -1.1 222,726 + GFF2173 0.40 +0.4 222,726 + GFF2173 0.40 -0.9 222,727 - GFF2173 0.40 -0.1 222,727 - GFF2173 0.40 -0.1 222,727 - GFF2173 0.40 +0.1 222,727 - GFF2173 0.40 -1.1 222,743 + GFF2173 0.42 +0.4 222,743 + GFF2173 0.42 -0.3 222,743 + GFF2173 0.42 -1.9 222,774 - GFF2173 0.44 +0.3 222,804 - GFF2173 0.47 -1.2 222,812 + GFF2173 0.47 -0.2 222,812 + GFF2173 0.47 +1.0 222,812 + GFF2173 0.47 -2.0 222,812 + GFF2173 0.47 -0.8 222,813 + GFF2173 0.47 +0.3 222,813 - GFF2173 0.47 +0.1 222,813 - GFF2173 0.47 +0.8 222,813 - GFF2173 0.47 -1.2 222,813 - GFF2173 0.47 -1.0 222,813 - GFF2173 0.47 -1.7 222,813 - GFF2173 0.47 +0.1 222,874 + GFF2173 0.52 -2.1 222,878 + GFF2173 0.52 -1.0 222,878 + GFF2173 0.52 -2.5 222,878 + GFF2173 0.52 -1.2 222,879 - GFF2173 0.52 -1.2 222,879 - GFF2173 0.52 -0.5 222,879 - GFF2173 0.52 -0.9 222,879 - GFF2173 0.52 -0.1 222,879 - GFF2173 0.52 -0.9 222,879 - GFF2173 0.52 -0.9 222,912 + GFF2173 0.55 -0.8 222,912 + GFF2173 0.55 +0.1 222,912 + GFF2173 0.55 -0.4 222,912 + GFF2173 0.55 -2.1 222,912 + GFF2173 0.55 +0.1 222,913 - GFF2173 0.55 +0.3 222,913 - GFF2173 0.55 -0.3 222,913 - GFF2173 0.55 -0.3 222,938 + GFF2173 0.57 -0.5 222,938 + GFF2173 0.57 -0.3 222,939 - GFF2173 0.57 -1.1 222,939 - GFF2173 0.57 -0.8 222,965 + GFF2173 0.59 -0.8 223,016 + GFF2173 0.63 -0.9 223,016 + GFF2173 0.63 -0.2 223,017 - GFF2173 0.63 -1.1 223,024 + GFF2173 0.64 -0.2 223,064 + GFF2173 0.67 +0.1 223,065 - GFF2173 0.67 -0.4 223,070 + GFF2173 0.67 -2.2 223,070 + GFF2173 0.67 +0.7 223,070 + GFF2173 0.67 -1.1 223,071 - GFF2173 0.68 -1.9 223,071 - GFF2173 0.68 -0.9 223,071 - GFF2173 0.68 +0.3 223,071 - GFF2173 0.68 -1.2
Or see this region's nucleotide sequence