Strain Fitness in Methylophilus sp. DMC18 around GFF1351

Experiment: D-Glucose and Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1350 and GFF1351 are separated by 12 nucleotidesGFF1351 and GFF1352 are separated by 90 nucleotides GFF1350 - hypothetical protein, at 614,424 to 616,838 GFF1350 GFF1351 - Chemotaxis protein CheW, at 616,851 to 617,366 GFF1351 GFF1352 - hypothetical protein, at 617,457 to 620,066 GFF1352 Position (kb) 616 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1at 615.970 kb on + strand, within GFF1350at 615.970 kb on + strand, within GFF1350at 615.970 kb on + strand, within GFF1350at 616.001 kb on + strand, within GFF1350at 616.009 kb on + strand, within GFF1350at 616.009 kb on + strand, within GFF1350at 616.178 kb on + strand, within GFF1350at 616.179 kb on - strand, within GFF1350at 616.268 kb on + strand, within GFF1350at 616.289 kb on + strand, within GFF1350at 616.395 kb on + strand, within GFF1350at 616.395 kb on + strand, within GFF1350at 616.395 kb on + strand, within GFF1350at 616.395 kb on + strand, within GFF1350at 616.395 kb on + strand, within GFF1350at 616.395 kb on + strand, within GFF1350at 616.395 kb on + strand, within GFF1350at 616.396 kb on - strand, within GFF1350at 616.396 kb on - strand, within GFF1350at 616.396 kb on - strand, within GFF1350at 616.497 kb on + strand, within GFF1350at 616.497 kb on + strand, within GFF1350at 616.497 kb on + strand, within GFF1350at 616.497 kb on + strand, within GFF1350at 616.498 kb on - strand, within GFF1350at 616.613 kb on - strandat 616.770 kb on + strandat 616.770 kb on + strandat 616.770 kb on + strandat 616.771 kb on - strandat 616.771 kb on - strandat 616.806 kb on + strandat 616.807 kb on - strandat 616.807 kb on - strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.827 kb on - strandat 616.827 kb on - strandat 616.836 kb on + strandat 616.843 kb on + strandat 616.843 kb on + strandat 616.843 kb on + strandat 616.843 kb on + strandat 616.844 kb on - strandat 616.844 kb on - strandat 616.844 kb on - strandat 616.844 kb on - strandat 616.844 kb on - strandat 616.844 kb on - strandat 616.844 kb on - strandat 616.845 kb on + strandat 616.845 kb on + strandat 616.845 kb on + strandat 616.845 kb on + strandat 616.846 kb on - strandat 616.846 kb on - strandat 616.856 kb on + strandat 616.857 kb on - strandat 616.871 kb on - strandat 616.877 kb on + strandat 616.877 kb on + strandat 616.877 kb on + strandat 616.877 kb on + strandat 616.877 kb on + strandat 616.877 kb on + strandat 616.878 kb on - strandat 616.878 kb on - strandat 616.889 kb on + strandat 616.889 kb on + strandat 616.890 kb on - strandat 616.957 kb on - strand, within GFF1351at 617.083 kb on + strand, within GFF1351at 617.083 kb on + strand, within GFF1351at 617.083 kb on + strand, within GFF1351at 617.084 kb on - strand, within GFF1351at 617.084 kb on - strand, within GFF1351at 617.084 kb on - strand, within GFF1351at 617.084 kb on - strand, within GFF1351at 617.087 kb on + strand, within GFF1351at 617.087 kb on + strand, within GFF1351at 617.087 kb on + strand, within GFF1351at 617.087 kb on + strand, within GFF1351at 617.088 kb on - strand, within GFF1351at 617.115 kb on + strand, within GFF1351at 617.116 kb on - strand, within GFF1351at 617.126 kb on + strand, within GFF1351at 617.126 kb on + strand, within GFF1351at 617.259 kb on + strand, within GFF1351at 617.259 kb on + strand, within GFF1351at 617.259 kb on + strand, within GFF1351at 617.260 kb on - strand, within GFF1351at 617.260 kb on - strand, within GFF1351at 617.260 kb on - strand, within GFF1351at 617.260 kb on - strand, within GFF1351at 617.365 kb on - strandat 617.369 kb on - strandat 617.384 kb on - strandat 617.399 kb on + strandat 617.399 kb on + strandat 617.399 kb on + strandat 617.399 kb on + strandat 617.400 kb on - strandat 617.400 kb on - strandat 617.403 kb on + strandat 617.404 kb on - strandat 617.404 kb on - strandat 617.404 kb on - strandat 617.404 kb on - strandat 617.408 kb on + strandat 617.429 kb on + strandat 617.429 kb on + strandat 617.637 kb on + strandat 617.710 kb on - strandat 617.731 kb on + strand, within GFF1352at 617.808 kb on + strand, within GFF1352at 617.808 kb on + strand, within GFF1352at 617.808 kb on + strand, within GFF1352at 617.809 kb on - strand, within GFF1352at 617.809 kb on - strand, within GFF1352at 617.853 kb on + strand, within GFF1352at 617.853 kb on + strand, within GFF1352at 617.867 kb on + strand, within GFF1352at 617.868 kb on - strand, within GFF1352at 617.917 kb on + strand, within GFF1352at 617.960 kb on + strand, within GFF1352at 617.960 kb on + strand, within GFF1352at 617.960 kb on + strand, within GFF1352at 617.960 kb on + strand, within GFF1352at 617.960 kb on + strand, within GFF1352at 617.960 kb on + strand, within GFF1352at 617.961 kb on - strand, within GFF1352at 617.961 kb on - strand, within GFF1352at 617.961 kb on - strand, within GFF1352at 617.961 kb on - strand, within GFF1352at 617.962 kb on - strand, within GFF1352at 617.972 kb on + strand, within GFF1352at 617.972 kb on + strand, within GFF1352at 617.972 kb on + strand, within GFF1352at 617.972 kb on + strand, within GFF1352at 617.972 kb on + strand, within GFF1352at 617.972 kb on + strand, within GFF1352at 617.972 kb on + strand, within GFF1352at 617.973 kb on - strand, within GFF1352at 617.973 kb on - strand, within GFF1352at 617.973 kb on - strand, within GFF1352at 618.072 kb on + strand, within GFF1352at 618.072 kb on + strand, within GFF1352at 618.072 kb on + strand, within GFF1352at 618.072 kb on + strand, within GFF1352at 618.171 kb on + strand, within GFF1352at 618.171 kb on + strand, within GFF1352at 618.171 kb on + strand, within GFF1352at 618.171 kb on + strand, within GFF1352at 618.171 kb on + strand, within GFF1352at 618.171 kb on + strand, within GFF1352at 618.171 kb on + strand, within GFF1352at 618.172 kb on - strand, within GFF1352at 618.172 kb on - strand, within GFF1352at 618.172 kb on - strand, within GFF1352at 618.202 kb on + strand, within GFF1352at 618.202 kb on + strand, within GFF1352at 618.202 kb on + strand, within GFF1352at 618.220 kb on - strand, within GFF1352at 618.225 kb on + strand, within GFF1352at 618.230 kb on + strand, within GFF1352at 618.230 kb on + strand, within GFF1352at 618.230 kb on + strand, within GFF1352at 618.230 kb on + strand, within GFF1352at 618.230 kb on + strand, within GFF1352at 618.231 kb on - strand, within GFF1352at 618.231 kb on - strand, within GFF1352at 618.231 kb on - strand, within GFF1352at 618.231 kb on - strand, within GFF1352at 618.231 kb on - strand, within GFF1352at 618.231 kb on - strand, within GFF1352at 618.233 kb on + strand, within GFF1352at 618.234 kb on - strand, within GFF1352at 618.234 kb on - strand, within GFF1352at 618.234 kb on - strand, within GFF1352at 618.292 kb on + strand, within GFF1352at 618.292 kb on + strand, within GFF1352at 618.292 kb on + strand, within GFF1352at 618.293 kb on - strand, within GFF1352at 618.293 kb on - strand, within GFF1352at 618.293 kb on - strand, within GFF1352at 618.327 kb on - strand, within GFF1352at 618.327 kb on - strand, within GFF1352at 618.353 kb on - strand, within GFF1352

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and Methanol (C)
remove
615,970 + GFF1350 0.64 -1.1
615,970 + GFF1350 0.64 -2.3
615,970 + GFF1350 0.64 -0.4
616,001 + GFF1350 0.65 -0.5
616,009 + GFF1350 0.66 -1.2
616,009 + GFF1350 0.66 +0.2
616,178 + GFF1350 0.73 -1.7
616,179 - GFF1350 0.73 -0.1
616,268 + GFF1350 0.76 -1.1
616,289 + GFF1350 0.77 -0.1
616,395 + GFF1350 0.82 -1.3
616,395 + GFF1350 0.82 -1.4
616,395 + GFF1350 0.82 -1.0
616,395 + GFF1350 0.82 -1.9
616,395 + GFF1350 0.82 -0.9
616,395 + GFF1350 0.82 +0.1
616,395 + GFF1350 0.82 -0.4
616,396 - GFF1350 0.82 +0.9
616,396 - GFF1350 0.82 -0.1
616,396 - GFF1350 0.82 -1.0
616,497 + GFF1350 0.86 -1.3
616,497 + GFF1350 0.86 -1.2
616,497 + GFF1350 0.86 -0.3
616,497 + GFF1350 0.86 -0.7
616,498 - GFF1350 0.86 -0.4
616,613 - +0.5
616,770 + -1.0
616,770 + -0.8
616,770 + -1.7
616,771 - +0.0
616,771 - -1.5
616,806 + -1.8
616,807 - -0.7
616,807 - -0.9
616,826 + -0.8
616,826 + +0.9
616,826 + -0.6
616,826 + -0.3
616,826 + +0.1
616,826 + +0.1
616,826 + -0.6
616,826 + -1.4
616,827 - -1.7
616,827 - -1.4
616,836 + -1.0
616,843 + -0.4
616,843 + -0.4
616,843 + -2.1
616,843 + -0.1
616,844 - +0.5
616,844 - -0.3
616,844 - -0.4
616,844 - -0.1
616,844 - -1.1
616,844 - -0.7
616,844 - +0.2
616,845 + -1.4
616,845 + -0.7
616,845 + -0.9
616,845 + -0.7
616,846 - -0.8
616,846 - -0.4
616,856 + -1.4
616,857 - +0.6
616,871 - +0.4
616,877 + -2.4
616,877 + +0.1
616,877 + +0.0
616,877 + -1.0
616,877 + -0.7
616,877 + -0.2
616,878 - +0.2
616,878 - -0.4
616,889 + -1.7
616,889 + +0.1
616,890 - -0.4
616,957 - GFF1351 0.21 -0.2
617,083 + GFF1351 0.45 -0.4
617,083 + GFF1351 0.45 -0.1
617,083 + GFF1351 0.45 +0.3
617,084 - GFF1351 0.45 +0.4
617,084 - GFF1351 0.45 -0.7
617,084 - GFF1351 0.45 -0.4
617,084 - GFF1351 0.45 -0.5
617,087 + GFF1351 0.46 +0.3
617,087 + GFF1351 0.46 +0.5
617,087 + GFF1351 0.46 -0.1
617,087 + GFF1351 0.46 -1.1
617,088 - GFF1351 0.46 -1.5
617,115 + GFF1351 0.51 -2.5
617,116 - GFF1351 0.51 +0.5
617,126 + GFF1351 0.53 -1.4
617,126 + GFF1351 0.53 -2.0
617,259 + GFF1351 0.79 -1.7
617,259 + GFF1351 0.79 -0.9
617,259 + GFF1351 0.79 -2.3
617,260 - GFF1351 0.79 +0.9
617,260 - GFF1351 0.79 -1.0
617,260 - GFF1351 0.79 -1.4
617,260 - GFF1351 0.79 -1.4
617,365 - +0.7
617,369 - -0.7
617,384 - -0.1
617,399 + -0.1
617,399 + -0.6
617,399 + +0.9
617,399 + +0.1
617,400 - +0.3
617,400 - -2.5
617,403 + -0.7
617,404 - +0.7
617,404 - -0.3
617,404 - -2.8
617,404 - +1.2
617,408 + -0.4
617,429 + -1.4
617,429 + +0.1
617,637 + -0.5
617,710 - -0.1
617,731 + GFF1352 0.10 -0.4
617,808 + GFF1352 0.13 -0.1
617,808 + GFF1352 0.13 -1.1
617,808 + GFF1352 0.13 -2.1
617,809 - GFF1352 0.13 +0.9
617,809 - GFF1352 0.13 -1.1
617,853 + GFF1352 0.15 -0.0
617,853 + GFF1352 0.15 -0.1
617,867 + GFF1352 0.16 -1.3
617,868 - GFF1352 0.16 +0.5
617,917 + GFF1352 0.18 -1.3
617,960 + GFF1352 0.19 -0.7
617,960 + GFF1352 0.19 -1.1
617,960 + GFF1352 0.19 +0.5
617,960 + GFF1352 0.19 -0.7
617,960 + GFF1352 0.19 +0.9
617,960 + GFF1352 0.19 -1.4
617,961 - GFF1352 0.19 -0.1
617,961 - GFF1352 0.19 -1.7
617,961 - GFF1352 0.19 -1.1
617,961 - GFF1352 0.19 -1.4
617,962 - GFF1352 0.19 -2.1
617,972 + GFF1352 0.20 -0.6
617,972 + GFF1352 0.20 -1.4
617,972 + GFF1352 0.20 +1.2
617,972 + GFF1352 0.20 -1.4
617,972 + GFF1352 0.20 -0.5
617,972 + GFF1352 0.20 -1.5
617,972 + GFF1352 0.20 +0.5
617,973 - GFF1352 0.20 +0.1
617,973 - GFF1352 0.20 -0.8
617,973 - GFF1352 0.20 -0.5
618,072 + GFF1352 0.24 -0.5
618,072 + GFF1352 0.24 -1.4
618,072 + GFF1352 0.24 -0.0
618,072 + GFF1352 0.24 -1.0
618,171 + GFF1352 0.27 -1.1
618,171 + GFF1352 0.27 -0.8
618,171 + GFF1352 0.27 -0.3
618,171 + GFF1352 0.27 -0.4
618,171 + GFF1352 0.27 +1.2
618,171 + GFF1352 0.27 +0.2
618,171 + GFF1352 0.27 -0.7
618,172 - GFF1352 0.27 -3.3
618,172 - GFF1352 0.27 -0.1
618,172 - GFF1352 0.27 -0.7
618,202 + GFF1352 0.29 -1.2
618,202 + GFF1352 0.29 -0.4
618,202 + GFF1352 0.29 +0.2
618,220 - GFF1352 0.29 -1.9
618,225 + GFF1352 0.29 -0.3
618,230 + GFF1352 0.30 +0.3
618,230 + GFF1352 0.30 -0.2
618,230 + GFF1352 0.30 -0.1
618,230 + GFF1352 0.30 -0.7
618,230 + GFF1352 0.30 +0.1
618,231 - GFF1352 0.30 -0.3
618,231 - GFF1352 0.30 +0.1
618,231 - GFF1352 0.30 -0.4
618,231 - GFF1352 0.30 +0.9
618,231 - GFF1352 0.30 -1.4
618,231 - GFF1352 0.30 -0.3
618,233 + GFF1352 0.30 +0.5
618,234 - GFF1352 0.30 +0.4
618,234 - GFF1352 0.30 -1.7
618,234 - GFF1352 0.30 -1.1
618,292 + GFF1352 0.32 +0.0
618,292 + GFF1352 0.32 -0.1
618,292 + GFF1352 0.32 -1.7
618,293 - GFF1352 0.32 -1.7
618,293 - GFF1352 0.32 -1.3
618,293 - GFF1352 0.32 +0.1
618,327 - GFF1352 0.33 -0.7
618,327 - GFF1352 0.33 -0.5
618,353 - GFF1352 0.34 -0.7

Or see this region's nucleotide sequence