Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06810

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06809 and MPMX19_06810 are separated by 269 nucleotidesMPMX19_06810 and MPMX19_06811 are separated by 30 nucleotidesMPMX19_06811 and MPMX19_06812 are separated by 42 nucleotides MPMX19_06809: MPMX19_06809 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 74,051 to 74,854 _06809 MPMX19_06810: MPMX19_06810 - hypothetical protein, at 75,124 to 76,392 _06810 MPMX19_06811: MPMX19_06811 - Cytochrome c4, at 76,423 to 76,746 _06811 MPMX19_06812: MPMX19_06812 - hypothetical protein, at 76,789 to 78,597 _06812 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.169 kb on - strand, within MPMX19_06809at 74.169 kb on - strand, within MPMX19_06809at 74.173 kb on + strand, within MPMX19_06809at 74.399 kb on + strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.417 kb on + strand, within MPMX19_06809at 74.418 kb on - strand, within MPMX19_06809at 74.418 kb on - strand, within MPMX19_06809at 74.503 kb on - strand, within MPMX19_06809at 74.529 kb on - strand, within MPMX19_06809at 74.597 kb on + strand, within MPMX19_06809at 74.606 kb on + strand, within MPMX19_06809at 74.606 kb on + strand, within MPMX19_06809at 74.607 kb on - strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.753 kb on + strand, within MPMX19_06809at 74.754 kb on - strand, within MPMX19_06809at 74.754 kb on - strand, within MPMX19_06809at 74.825 kb on - strandat 74.917 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.958 kb on - strandat 74.958 kb on - strandat 75.355 kb on + strand, within MPMX19_06810at 75.355 kb on + strand, within MPMX19_06810at 75.356 kb on - strand, within MPMX19_06810at 75.356 kb on - strand, within MPMX19_06810at 75.356 kb on - strand, within MPMX19_06810at 75.604 kb on + strand, within MPMX19_06810at 75.604 kb on + strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.676 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.778 kb on + strand, within MPMX19_06810at 75.779 kb on - strand, within MPMX19_06810at 75.841 kb on + strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.997 kb on + strand, within MPMX19_06810at 75.998 kb on - strand, within MPMX19_06810at 75.998 kb on - strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.001 kb on - strand, within MPMX19_06810at 76.030 kb on + strand, within MPMX19_06810at 76.078 kb on + strand, within MPMX19_06810at 76.079 kb on - strand, within MPMX19_06810at 76.114 kb on + strand, within MPMX19_06810at 76.141 kb on + strand, within MPMX19_06810at 76.291 kb on + strandat 76.292 kb on - strandat 76.369 kb on + strandat 76.369 kb on + strandat 76.381 kb on + strandat 76.381 kb on + strandat 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.601 kb on - strand, within MPMX19_06811at 76.601 kb on - strand, within MPMX19_06811at 76.625 kb on - strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.745 kb on - strandat 76.970 kb on + strand, within MPMX19_06812at 76.971 kb on - strand, within MPMX19_06812at 76.971 kb on - strand, within MPMX19_06812at 76.992 kb on - strand, within MPMX19_06812at 76.992 kb on - strand, within MPMX19_06812at 77.015 kb on + strand, within MPMX19_06812at 77.015 kb on + strand, within MPMX19_06812at 77.048 kb on + strand, within MPMX19_06812at 77.049 kb on - strand, within MPMX19_06812at 77.049 kb on - strand, within MPMX19_06812at 77.187 kb on - strand, within MPMX19_06812

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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74,168 + MPMX19_06809 0.15 +0.4
74,168 + MPMX19_06809 0.15 -0.4
74,168 + MPMX19_06809 0.15 -1.5
74,168 + MPMX19_06809 0.15 -0.7
74,169 - MPMX19_06809 0.15 -0.4
74,169 - MPMX19_06809 0.15 -0.2
74,173 + MPMX19_06809 0.15 +0.2
74,399 + MPMX19_06809 0.43 +1.6
74,400 - MPMX19_06809 0.43 -0.1
74,400 - MPMX19_06809 0.43 -0.2
74,400 - MPMX19_06809 0.43 +1.0
74,417 + MPMX19_06809 0.46 -0.4
74,418 - MPMX19_06809 0.46 -0.2
74,418 - MPMX19_06809 0.46 -0.9
74,503 - MPMX19_06809 0.56 -1.5
74,529 - MPMX19_06809 0.59 -2.2
74,597 + MPMX19_06809 0.68 -0.4
74,606 + MPMX19_06809 0.69 +1.0
74,606 + MPMX19_06809 0.69 -1.0
74,607 - MPMX19_06809 0.69 -0.7
74,633 + MPMX19_06809 0.72 +0.3
74,633 + MPMX19_06809 0.72 -1.7
74,633 + MPMX19_06809 0.72 -0.3
74,753 + MPMX19_06809 0.87 -0.3
74,754 - MPMX19_06809 0.87 -0.5
74,754 - MPMX19_06809 0.87 +1.6
74,825 - -0.4
74,917 + +0.3
74,957 + -0.3
74,957 + -1.3
74,957 + -0.5
74,957 + -0.8
74,957 + -0.3
74,957 + -0.4
74,957 + +0.3
74,957 + -1.5
74,957 + -1.5
74,958 - -0.6
74,958 - -0.6
75,355 + MPMX19_06810 0.18 +1.2
75,355 + MPMX19_06810 0.18 -0.7
75,356 - MPMX19_06810 0.18 -0.1
75,356 - MPMX19_06810 0.18 +0.3
75,356 - MPMX19_06810 0.18 +0.0
75,604 + MPMX19_06810 0.38 -1.2
75,604 + MPMX19_06810 0.38 -0.4
75,605 - MPMX19_06810 0.38 +1.8
75,605 - MPMX19_06810 0.38 -0.7
75,605 - MPMX19_06810 0.38 -0.2
75,676 + MPMX19_06810 0.43 -0.5
75,724 + MPMX19_06810 0.47 +0.5
75,724 + MPMX19_06810 0.47 -0.4
75,724 + MPMX19_06810 0.47 -1.1
75,724 + MPMX19_06810 0.47 -0.5
75,725 - MPMX19_06810 0.47 -1.4
75,725 - MPMX19_06810 0.47 +1.0
75,725 - MPMX19_06810 0.47 -1.8
75,725 - MPMX19_06810 0.47 +0.0
75,725 - MPMX19_06810 0.47 -1.1
75,725 - MPMX19_06810 0.47 -0.3
75,725 - MPMX19_06810 0.47 +0.3
75,778 + MPMX19_06810 0.52 -0.1
75,779 - MPMX19_06810 0.52 +0.3
75,841 + MPMX19_06810 0.57 +1.4
75,842 - MPMX19_06810 0.57 -0.7
75,842 - MPMX19_06810 0.57 -0.1
75,842 - MPMX19_06810 0.57 -0.4
75,842 - MPMX19_06810 0.57 +1.0
75,842 - MPMX19_06810 0.57 -0.1
75,842 - MPMX19_06810 0.57 +1.4
75,997 + MPMX19_06810 0.69 +1.5
75,998 - MPMX19_06810 0.69 +0.3
75,998 - MPMX19_06810 0.69 +0.3
76,000 + MPMX19_06810 0.69 -0.4
76,000 + MPMX19_06810 0.69 +0.5
76,000 + MPMX19_06810 0.69 +1.8
76,001 - MPMX19_06810 0.69 -0.4
76,030 + MPMX19_06810 0.71 +0.5
76,078 + MPMX19_06810 0.75 +0.7
76,079 - MPMX19_06810 0.75 -1.5
76,114 + MPMX19_06810 0.78 +0.9
76,141 + MPMX19_06810 0.80 +0.0
76,291 + +0.9
76,292 - -1.2
76,369 + +0.2
76,369 + +1.3
76,381 + -1.2
76,381 + +0.3
76,468 + MPMX19_06811 0.14 -0.5
76,468 + MPMX19_06811 0.14 +1.0
76,468 + MPMX19_06811 0.14 +1.8
76,468 + MPMX19_06811 0.14 -1.2
76,469 - MPMX19_06811 0.14 +0.9
76,469 - MPMX19_06811 0.14 -0.8
76,469 - MPMX19_06811 0.14 +0.3
76,600 + MPMX19_06811 0.55 -1.3
76,600 + MPMX19_06811 0.55 +0.6
76,600 + MPMX19_06811 0.55 +0.1
76,601 - MPMX19_06811 0.55 +0.1
76,601 - MPMX19_06811 0.55 +0.3
76,625 - MPMX19_06811 0.62 -0.3
76,708 + MPMX19_06811 0.88 -0.2
76,708 + MPMX19_06811 0.88 -1.0
76,708 + MPMX19_06811 0.88 -2.1
76,708 + MPMX19_06811 0.88 -1.4
76,708 + MPMX19_06811 0.88 +1.6
76,708 + MPMX19_06811 0.88 -0.9
76,709 - MPMX19_06811 0.88 +0.9
76,709 - MPMX19_06811 0.88 -0.2
76,709 - MPMX19_06811 0.88 -0.4
76,709 - MPMX19_06811 0.88 -1.1
76,745 - -0.7
76,970 + MPMX19_06812 0.10 -2.2
76,971 - MPMX19_06812 0.10 +0.1
76,971 - MPMX19_06812 0.10 +0.2
76,992 - MPMX19_06812 0.11 -1.0
76,992 - MPMX19_06812 0.11 -0.2
77,015 + MPMX19_06812 0.12 -0.0
77,015 + MPMX19_06812 0.12 -0.5
77,048 + MPMX19_06812 0.14 -0.4
77,049 - MPMX19_06812 0.14 -0.1
77,049 - MPMX19_06812 0.14 +0.2
77,187 - MPMX19_06812 0.22 -0.4

Or see this region's nucleotide sequence