Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06809 and MPMX19_06810 are separated by 269 nucleotides MPMX19_06810 and MPMX19_06811 are separated by 30 nucleotides MPMX19_06811 and MPMX19_06812 are separated by 42 nucleotides
MPMX19_06809: MPMX19_06809 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 74,051 to 74,854
_06809
MPMX19_06810: MPMX19_06810 - hypothetical protein, at 75,124 to 76,392
_06810
MPMX19_06811: MPMX19_06811 - Cytochrome c4, at 76,423 to 76,746
_06811
MPMX19_06812: MPMX19_06812 - hypothetical protein, at 76,789 to 78,597
_06812
Position (kb)
75
76
77 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 74.168 kb on + strand, within MPMX19_06809 at 74.168 kb on + strand, within MPMX19_06809 at 74.168 kb on + strand, within MPMX19_06809 at 74.168 kb on + strand, within MPMX19_06809 at 74.169 kb on - strand, within MPMX19_06809 at 74.169 kb on - strand, within MPMX19_06809 at 74.173 kb on + strand, within MPMX19_06809 at 74.399 kb on + strand, within MPMX19_06809 at 74.400 kb on - strand, within MPMX19_06809 at 74.400 kb on - strand, within MPMX19_06809 at 74.400 kb on - strand, within MPMX19_06809 at 74.417 kb on + strand, within MPMX19_06809 at 74.418 kb on - strand, within MPMX19_06809 at 74.418 kb on - strand, within MPMX19_06809 at 74.503 kb on - strand, within MPMX19_06809 at 74.529 kb on - strand, within MPMX19_06809 at 74.597 kb on + strand, within MPMX19_06809 at 74.606 kb on + strand, within MPMX19_06809 at 74.606 kb on + strand, within MPMX19_06809 at 74.607 kb on - strand, within MPMX19_06809 at 74.633 kb on + strand, within MPMX19_06809 at 74.633 kb on + strand, within MPMX19_06809 at 74.633 kb on + strand, within MPMX19_06809 at 74.753 kb on + strand, within MPMX19_06809 at 74.754 kb on - strand, within MPMX19_06809 at 74.754 kb on - strand, within MPMX19_06809 at 74.825 kb on - strand at 74.917 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.957 kb on + strand at 74.958 kb on - strand at 74.958 kb on - strand at 75.355 kb on + strand, within MPMX19_06810 at 75.355 kb on + strand, within MPMX19_06810 at 75.356 kb on - strand, within MPMX19_06810 at 75.356 kb on - strand, within MPMX19_06810 at 75.356 kb on - strand, within MPMX19_06810 at 75.604 kb on + strand, within MPMX19_06810 at 75.604 kb on + strand, within MPMX19_06810 at 75.605 kb on - strand, within MPMX19_06810 at 75.605 kb on - strand, within MPMX19_06810 at 75.605 kb on - strand, within MPMX19_06810 at 75.676 kb on + strand, within MPMX19_06810 at 75.724 kb on + strand, within MPMX19_06810 at 75.724 kb on + strand, within MPMX19_06810 at 75.724 kb on + strand, within MPMX19_06810 at 75.724 kb on + strand, within MPMX19_06810 at 75.725 kb on - strand, within MPMX19_06810 at 75.725 kb on - strand, within MPMX19_06810 at 75.725 kb on - strand, within MPMX19_06810 at 75.725 kb on - strand, within MPMX19_06810 at 75.725 kb on - strand, within MPMX19_06810 at 75.725 kb on - strand, within MPMX19_06810 at 75.725 kb on - strand, within MPMX19_06810 at 75.778 kb on + strand, within MPMX19_06810 at 75.779 kb on - strand, within MPMX19_06810 at 75.841 kb on + strand, within MPMX19_06810 at 75.842 kb on - strand, within MPMX19_06810 at 75.842 kb on - strand, within MPMX19_06810 at 75.842 kb on - strand, within MPMX19_06810 at 75.842 kb on - strand, within MPMX19_06810 at 75.842 kb on - strand, within MPMX19_06810 at 75.842 kb on - strand, within MPMX19_06810 at 75.997 kb on + strand, within MPMX19_06810 at 75.998 kb on - strand, within MPMX19_06810 at 75.998 kb on - strand, within MPMX19_06810 at 76.000 kb on + strand, within MPMX19_06810 at 76.000 kb on + strand, within MPMX19_06810 at 76.000 kb on + strand, within MPMX19_06810 at 76.001 kb on - strand, within MPMX19_06810 at 76.030 kb on + strand, within MPMX19_06810 at 76.078 kb on + strand, within MPMX19_06810 at 76.079 kb on - strand, within MPMX19_06810 at 76.114 kb on + strand, within MPMX19_06810 at 76.141 kb on + strand, within MPMX19_06810 at 76.291 kb on + strand at 76.292 kb on - strand at 76.369 kb on + strand at 76.369 kb on + strand at 76.381 kb on + strand at 76.381 kb on + strand at 76.468 kb on + strand, within MPMX19_06811 at 76.468 kb on + strand, within MPMX19_06811 at 76.468 kb on + strand, within MPMX19_06811 at 76.468 kb on + strand, within MPMX19_06811 at 76.469 kb on - strand, within MPMX19_06811 at 76.469 kb on - strand, within MPMX19_06811 at 76.469 kb on - strand, within MPMX19_06811 at 76.600 kb on + strand, within MPMX19_06811 at 76.600 kb on + strand, within MPMX19_06811 at 76.600 kb on + strand, within MPMX19_06811 at 76.601 kb on - strand, within MPMX19_06811 at 76.601 kb on - strand, within MPMX19_06811 at 76.625 kb on - strand, within MPMX19_06811 at 76.708 kb on + strand, within MPMX19_06811 at 76.708 kb on + strand, within MPMX19_06811 at 76.708 kb on + strand, within MPMX19_06811 at 76.708 kb on + strand, within MPMX19_06811 at 76.708 kb on + strand, within MPMX19_06811 at 76.708 kb on + strand, within MPMX19_06811 at 76.709 kb on - strand, within MPMX19_06811 at 76.709 kb on - strand, within MPMX19_06811 at 76.709 kb on - strand, within MPMX19_06811 at 76.709 kb on - strand, within MPMX19_06811 at 76.745 kb on - strand at 76.970 kb on + strand, within MPMX19_06812 at 76.971 kb on - strand, within MPMX19_06812 at 76.971 kb on - strand, within MPMX19_06812 at 76.992 kb on - strand, within MPMX19_06812 at 76.992 kb on - strand, within MPMX19_06812 at 77.015 kb on + strand, within MPMX19_06812 at 77.015 kb on + strand, within MPMX19_06812 at 77.048 kb on + strand, within MPMX19_06812 at 77.049 kb on - strand, within MPMX19_06812 at 77.049 kb on - strand, within MPMX19_06812 at 77.187 kb on - strand, within MPMX19_06812
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 74,168 + MPMX19_06809 0.15 +0.4 74,168 + MPMX19_06809 0.15 -0.4 74,168 + MPMX19_06809 0.15 -1.5 74,168 + MPMX19_06809 0.15 -0.7 74,169 - MPMX19_06809 0.15 -0.4 74,169 - MPMX19_06809 0.15 -0.2 74,173 + MPMX19_06809 0.15 +0.2 74,399 + MPMX19_06809 0.43 +1.6 74,400 - MPMX19_06809 0.43 -0.1 74,400 - MPMX19_06809 0.43 -0.2 74,400 - MPMX19_06809 0.43 +1.0 74,417 + MPMX19_06809 0.46 -0.4 74,418 - MPMX19_06809 0.46 -0.2 74,418 - MPMX19_06809 0.46 -0.9 74,503 - MPMX19_06809 0.56 -1.5 74,529 - MPMX19_06809 0.59 -2.2 74,597 + MPMX19_06809 0.68 -0.4 74,606 + MPMX19_06809 0.69 +1.0 74,606 + MPMX19_06809 0.69 -1.0 74,607 - MPMX19_06809 0.69 -0.7 74,633 + MPMX19_06809 0.72 +0.3 74,633 + MPMX19_06809 0.72 -1.7 74,633 + MPMX19_06809 0.72 -0.3 74,753 + MPMX19_06809 0.87 -0.3 74,754 - MPMX19_06809 0.87 -0.5 74,754 - MPMX19_06809 0.87 +1.6 74,825 - -0.4 74,917 + +0.3 74,957 + -0.3 74,957 + -1.3 74,957 + -0.5 74,957 + -0.8 74,957 + -0.3 74,957 + -0.4 74,957 + +0.3 74,957 + -1.5 74,957 + -1.5 74,958 - -0.6 74,958 - -0.6 75,355 + MPMX19_06810 0.18 +1.2 75,355 + MPMX19_06810 0.18 -0.7 75,356 - MPMX19_06810 0.18 -0.1 75,356 - MPMX19_06810 0.18 +0.3 75,356 - MPMX19_06810 0.18 +0.0 75,604 + MPMX19_06810 0.38 -1.2 75,604 + MPMX19_06810 0.38 -0.4 75,605 - MPMX19_06810 0.38 +1.8 75,605 - MPMX19_06810 0.38 -0.7 75,605 - MPMX19_06810 0.38 -0.2 75,676 + MPMX19_06810 0.43 -0.5 75,724 + MPMX19_06810 0.47 +0.5 75,724 + MPMX19_06810 0.47 -0.4 75,724 + MPMX19_06810 0.47 -1.1 75,724 + MPMX19_06810 0.47 -0.5 75,725 - MPMX19_06810 0.47 -1.4 75,725 - MPMX19_06810 0.47 +1.0 75,725 - MPMX19_06810 0.47 -1.8 75,725 - MPMX19_06810 0.47 +0.0 75,725 - MPMX19_06810 0.47 -1.1 75,725 - MPMX19_06810 0.47 -0.3 75,725 - MPMX19_06810 0.47 +0.3 75,778 + MPMX19_06810 0.52 -0.1 75,779 - MPMX19_06810 0.52 +0.3 75,841 + MPMX19_06810 0.57 +1.4 75,842 - MPMX19_06810 0.57 -0.7 75,842 - MPMX19_06810 0.57 -0.1 75,842 - MPMX19_06810 0.57 -0.4 75,842 - MPMX19_06810 0.57 +1.0 75,842 - MPMX19_06810 0.57 -0.1 75,842 - MPMX19_06810 0.57 +1.4 75,997 + MPMX19_06810 0.69 +1.5 75,998 - MPMX19_06810 0.69 +0.3 75,998 - MPMX19_06810 0.69 +0.3 76,000 + MPMX19_06810 0.69 -0.4 76,000 + MPMX19_06810 0.69 +0.5 76,000 + MPMX19_06810 0.69 +1.8 76,001 - MPMX19_06810 0.69 -0.4 76,030 + MPMX19_06810 0.71 +0.5 76,078 + MPMX19_06810 0.75 +0.7 76,079 - MPMX19_06810 0.75 -1.5 76,114 + MPMX19_06810 0.78 +0.9 76,141 + MPMX19_06810 0.80 +0.0 76,291 + +0.9 76,292 - -1.2 76,369 + +0.2 76,369 + +1.3 76,381 + -1.2 76,381 + +0.3 76,468 + MPMX19_06811 0.14 -0.5 76,468 + MPMX19_06811 0.14 +1.0 76,468 + MPMX19_06811 0.14 +1.8 76,468 + MPMX19_06811 0.14 -1.2 76,469 - MPMX19_06811 0.14 +0.9 76,469 - MPMX19_06811 0.14 -0.8 76,469 - MPMX19_06811 0.14 +0.3 76,600 + MPMX19_06811 0.55 -1.3 76,600 + MPMX19_06811 0.55 +0.6 76,600 + MPMX19_06811 0.55 +0.1 76,601 - MPMX19_06811 0.55 +0.1 76,601 - MPMX19_06811 0.55 +0.3 76,625 - MPMX19_06811 0.62 -0.3 76,708 + MPMX19_06811 0.88 -0.2 76,708 + MPMX19_06811 0.88 -1.0 76,708 + MPMX19_06811 0.88 -2.1 76,708 + MPMX19_06811 0.88 -1.4 76,708 + MPMX19_06811 0.88 +1.6 76,708 + MPMX19_06811 0.88 -0.9 76,709 - MPMX19_06811 0.88 +0.9 76,709 - MPMX19_06811 0.88 -0.2 76,709 - MPMX19_06811 0.88 -0.4 76,709 - MPMX19_06811 0.88 -1.1 76,745 - -0.7 76,970 + MPMX19_06812 0.10 -2.2 76,971 - MPMX19_06812 0.10 +0.1 76,971 - MPMX19_06812 0.10 +0.2 76,992 - MPMX19_06812 0.11 -1.0 76,992 - MPMX19_06812 0.11 -0.2 77,015 + MPMX19_06812 0.12 -0.0 77,015 + MPMX19_06812 0.12 -0.5 77,048 + MPMX19_06812 0.14 -0.4 77,049 - MPMX19_06812 0.14 -0.1 77,049 - MPMX19_06812 0.14 +0.2 77,187 - MPMX19_06812 0.22 -0.4
Or see this region's nucleotide sequence