Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06467

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06465 and MPMX19_06466 overlap by 4 nucleotidesMPMX19_06466 and MPMX19_06467 are separated by 4 nucleotidesMPMX19_06467 and MPMX19_06468 are separated by 133 nucleotides MPMX19_06465: MPMX19_06465 - hypothetical protein, at 248,857 to 249,768 _06465 MPMX19_06466: MPMX19_06466 - Vitamin B12 import ATP-binding protein BtuD, at 249,765 to 250,601 _06466 MPMX19_06467: MPMX19_06467 - hypothetical protein, at 250,606 to 251,637 _06467 MPMX19_06468: MPMX19_06468 - Putative acyl-CoA dehydrogenase YdbM, at 251,771 to 252,973 _06468 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1at 249.695 kb on + strandat 249.696 kb on - strandat 249.696 kb on - strandat 249.927 kb on + strand, within MPMX19_06466at 249.927 kb on + strand, within MPMX19_06466at 249.927 kb on + strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 250.405 kb on - strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.585 kb on + strandat 250.585 kb on + strandat 250.585 kb on + strandat 250.585 kb on + strandat 250.586 kb on - strandat 250.586 kb on - strandat 250.643 kb on + strandat 250.643 kb on + strandat 250.644 kb on - strandat 250.805 kb on + strand, within MPMX19_06467at 250.805 kb on + strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.958 kb on + strand, within MPMX19_06467at 251.004 kb on - strand, within MPMX19_06467at 251.114 kb on + strand, within MPMX19_06467at 251.114 kb on + strand, within MPMX19_06467at 251.115 kb on - strand, within MPMX19_06467at 251.495 kb on + strand, within MPMX19_06467at 251.495 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.508 kb on - strand, within MPMX19_06467at 251.932 kb on + strand, within MPMX19_06468at 251.932 kb on + strand, within MPMX19_06468at 251.952 kb on + strand, within MPMX19_06468at 251.952 kb on + strand, within MPMX19_06468at 251.953 kb on - strand, within MPMX19_06468at 252.328 kb on + strand, within MPMX19_06468at 252.329 kb on - strand, within MPMX19_06468at 252.329 kb on - strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.581 kb on - strand, within MPMX19_06468at 252.581 kb on - strand, within MPMX19_06468

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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249,695 + -1.4
249,696 - -0.3
249,696 - +0.4
249,927 + MPMX19_06466 0.19 -2.0
249,927 + MPMX19_06466 0.19 +0.8
249,927 + MPMX19_06466 0.19 -0.4
249,928 - MPMX19_06466 0.19 -0.7
249,928 - MPMX19_06466 0.19 +0.4
249,928 - MPMX19_06466 0.19 -1.5
249,928 - MPMX19_06466 0.19 -0.4
249,928 - MPMX19_06466 0.19 +0.4
249,928 - MPMX19_06466 0.19 -0.7
250,405 - MPMX19_06466 0.76 +0.7
250,444 + MPMX19_06466 0.81 +1.6
250,444 + MPMX19_06466 0.81 -0.0
250,444 + MPMX19_06466 0.81 -1.0
250,444 + MPMX19_06466 0.81 -0.9
250,444 + MPMX19_06466 0.81 -0.5
250,481 - MPMX19_06466 0.86 -0.6
250,481 - MPMX19_06466 0.86 -0.4
250,481 - MPMX19_06466 0.86 +0.0
250,481 - MPMX19_06466 0.86 +0.2
250,481 - MPMX19_06466 0.86 +0.0
250,481 - MPMX19_06466 0.86 +0.9
250,481 - MPMX19_06466 0.86 +0.5
250,481 - MPMX19_06466 0.86 -0.8
250,481 - MPMX19_06466 0.86 -0.4
250,513 + MPMX19_06466 0.89 +0.6
250,513 + MPMX19_06466 0.89 -0.2
250,513 + MPMX19_06466 0.89 +0.5
250,513 + MPMX19_06466 0.89 -0.7
250,513 + MPMX19_06466 0.89 -2.0
250,513 + MPMX19_06466 0.89 -0.4
250,513 + MPMX19_06466 0.89 +0.3
250,513 + MPMX19_06466 0.89 +0.4
250,513 + MPMX19_06466 0.89 -0.8
250,513 + MPMX19_06466 0.89 +0.1
250,513 + MPMX19_06466 0.89 -2.0
250,585 + -0.9
250,585 + -0.8
250,585 + -0.3
250,585 + +0.2
250,586 - +0.0
250,586 - -0.6
250,643 + -1.8
250,643 + -0.8
250,644 - -1.4
250,805 + MPMX19_06467 0.19 +0.8
250,805 + MPMX19_06467 0.19 +0.1
250,881 - MPMX19_06467 0.27 +0.6
250,881 - MPMX19_06467 0.27 -0.3
250,881 - MPMX19_06467 0.27 +0.3
250,881 - MPMX19_06467 0.27 +0.0
250,881 - MPMX19_06467 0.27 +0.3
250,958 + MPMX19_06467 0.34 +0.0
251,004 - MPMX19_06467 0.39 -0.2
251,114 + MPMX19_06467 0.49 +0.6
251,114 + MPMX19_06467 0.49 +1.0
251,115 - MPMX19_06467 0.49 +0.6
251,495 + MPMX19_06467 0.86 +0.3
251,495 + MPMX19_06467 0.86 +0.1
251,507 + MPMX19_06467 0.87 +0.2
251,507 + MPMX19_06467 0.87 +1.2
251,507 + MPMX19_06467 0.87 +1.0
251,507 + MPMX19_06467 0.87 +0.0
251,508 - MPMX19_06467 0.87 +1.0
251,932 + MPMX19_06468 0.13 +0.2
251,932 + MPMX19_06468 0.13 +0.8
251,952 + MPMX19_06468 0.15 +0.2
251,952 + MPMX19_06468 0.15 +0.0
251,953 - MPMX19_06468 0.15 +1.0
252,328 + MPMX19_06468 0.46 -0.2
252,329 - MPMX19_06468 0.46 +0.6
252,329 - MPMX19_06468 0.46 -0.5
252,580 + MPMX19_06468 0.67 -0.1
252,580 + MPMX19_06468 0.67 +0.0
252,580 + MPMX19_06468 0.67 -0.9
252,581 - MPMX19_06468 0.67 -1.5
252,581 - MPMX19_06468 0.67 -0.1

Or see this region's nucleotide sequence