Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06465 and MPMX19_06466 overlap by 4 nucleotides MPMX19_06466 and MPMX19_06467 are separated by 4 nucleotides MPMX19_06467 and MPMX19_06468 are separated by 133 nucleotides
MPMX19_06465: MPMX19_06465 - hypothetical protein, at 248,857 to 249,768
_06465
MPMX19_06466: MPMX19_06466 - Vitamin B12 import ATP-binding protein BtuD, at 249,765 to 250,601
_06466
MPMX19_06467: MPMX19_06467 - hypothetical protein, at 250,606 to 251,637
_06467
MPMX19_06468: MPMX19_06468 - Putative acyl-CoA dehydrogenase YdbM, at 251,771 to 252,973
_06468
Position (kb)
250
251
252 Strain fitness (log2 ratio)
-2
-1
0
1 at 249.695 kb on + strand at 249.696 kb on - strand at 249.696 kb on - strand at 249.927 kb on + strand, within MPMX19_06466 at 249.927 kb on + strand, within MPMX19_06466 at 249.927 kb on + strand, within MPMX19_06466 at 249.928 kb on - strand, within MPMX19_06466 at 249.928 kb on - strand, within MPMX19_06466 at 249.928 kb on - strand, within MPMX19_06466 at 249.928 kb on - strand, within MPMX19_06466 at 249.928 kb on - strand, within MPMX19_06466 at 249.928 kb on - strand, within MPMX19_06466 at 250.405 kb on - strand, within MPMX19_06466 at 250.444 kb on + strand, within MPMX19_06466 at 250.444 kb on + strand, within MPMX19_06466 at 250.444 kb on + strand, within MPMX19_06466 at 250.444 kb on + strand, within MPMX19_06466 at 250.444 kb on + strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.481 kb on - strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.513 kb on + strand, within MPMX19_06466 at 250.585 kb on + strand at 250.585 kb on + strand at 250.585 kb on + strand at 250.585 kb on + strand at 250.586 kb on - strand at 250.586 kb on - strand at 250.643 kb on + strand at 250.643 kb on + strand at 250.644 kb on - strand at 250.805 kb on + strand, within MPMX19_06467 at 250.805 kb on + strand, within MPMX19_06467 at 250.881 kb on - strand, within MPMX19_06467 at 250.881 kb on - strand, within MPMX19_06467 at 250.881 kb on - strand, within MPMX19_06467 at 250.881 kb on - strand, within MPMX19_06467 at 250.881 kb on - strand, within MPMX19_06467 at 250.958 kb on + strand, within MPMX19_06467 at 251.004 kb on - strand, within MPMX19_06467 at 251.114 kb on + strand, within MPMX19_06467 at 251.114 kb on + strand, within MPMX19_06467 at 251.115 kb on - strand, within MPMX19_06467 at 251.495 kb on + strand, within MPMX19_06467 at 251.495 kb on + strand, within MPMX19_06467 at 251.507 kb on + strand, within MPMX19_06467 at 251.507 kb on + strand, within MPMX19_06467 at 251.507 kb on + strand, within MPMX19_06467 at 251.507 kb on + strand, within MPMX19_06467 at 251.508 kb on - strand, within MPMX19_06467 at 251.932 kb on + strand, within MPMX19_06468 at 251.932 kb on + strand, within MPMX19_06468 at 251.952 kb on + strand, within MPMX19_06468 at 251.952 kb on + strand, within MPMX19_06468 at 251.953 kb on - strand, within MPMX19_06468 at 252.328 kb on + strand, within MPMX19_06468 at 252.329 kb on - strand, within MPMX19_06468 at 252.329 kb on - strand, within MPMX19_06468 at 252.580 kb on + strand, within MPMX19_06468 at 252.580 kb on + strand, within MPMX19_06468 at 252.580 kb on + strand, within MPMX19_06468 at 252.581 kb on - strand, within MPMX19_06468 at 252.581 kb on - strand, within MPMX19_06468
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 249,695 + -1.4 249,696 - -0.3 249,696 - +0.4 249,927 + MPMX19_06466 0.19 -2.0 249,927 + MPMX19_06466 0.19 +0.8 249,927 + MPMX19_06466 0.19 -0.4 249,928 - MPMX19_06466 0.19 -0.7 249,928 - MPMX19_06466 0.19 +0.4 249,928 - MPMX19_06466 0.19 -1.5 249,928 - MPMX19_06466 0.19 -0.4 249,928 - MPMX19_06466 0.19 +0.4 249,928 - MPMX19_06466 0.19 -0.7 250,405 - MPMX19_06466 0.76 +0.7 250,444 + MPMX19_06466 0.81 +1.6 250,444 + MPMX19_06466 0.81 -0.0 250,444 + MPMX19_06466 0.81 -1.0 250,444 + MPMX19_06466 0.81 -0.9 250,444 + MPMX19_06466 0.81 -0.5 250,481 - MPMX19_06466 0.86 -0.6 250,481 - MPMX19_06466 0.86 -0.4 250,481 - MPMX19_06466 0.86 +0.0 250,481 - MPMX19_06466 0.86 +0.2 250,481 - MPMX19_06466 0.86 +0.0 250,481 - MPMX19_06466 0.86 +0.9 250,481 - MPMX19_06466 0.86 +0.5 250,481 - MPMX19_06466 0.86 -0.8 250,481 - MPMX19_06466 0.86 -0.4 250,513 + MPMX19_06466 0.89 +0.6 250,513 + MPMX19_06466 0.89 -0.2 250,513 + MPMX19_06466 0.89 +0.5 250,513 + MPMX19_06466 0.89 -0.7 250,513 + MPMX19_06466 0.89 -2.0 250,513 + MPMX19_06466 0.89 -0.4 250,513 + MPMX19_06466 0.89 +0.3 250,513 + MPMX19_06466 0.89 +0.4 250,513 + MPMX19_06466 0.89 -0.8 250,513 + MPMX19_06466 0.89 +0.1 250,513 + MPMX19_06466 0.89 -2.0 250,585 + -0.9 250,585 + -0.8 250,585 + -0.3 250,585 + +0.2 250,586 - +0.0 250,586 - -0.6 250,643 + -1.8 250,643 + -0.8 250,644 - -1.4 250,805 + MPMX19_06467 0.19 +0.8 250,805 + MPMX19_06467 0.19 +0.1 250,881 - MPMX19_06467 0.27 +0.6 250,881 - MPMX19_06467 0.27 -0.3 250,881 - MPMX19_06467 0.27 +0.3 250,881 - MPMX19_06467 0.27 +0.0 250,881 - MPMX19_06467 0.27 +0.3 250,958 + MPMX19_06467 0.34 +0.0 251,004 - MPMX19_06467 0.39 -0.2 251,114 + MPMX19_06467 0.49 +0.6 251,114 + MPMX19_06467 0.49 +1.0 251,115 - MPMX19_06467 0.49 +0.6 251,495 + MPMX19_06467 0.86 +0.3 251,495 + MPMX19_06467 0.86 +0.1 251,507 + MPMX19_06467 0.87 +0.2 251,507 + MPMX19_06467 0.87 +1.2 251,507 + MPMX19_06467 0.87 +1.0 251,507 + MPMX19_06467 0.87 +0.0 251,508 - MPMX19_06467 0.87 +1.0 251,932 + MPMX19_06468 0.13 +0.2 251,932 + MPMX19_06468 0.13 +0.8 251,952 + MPMX19_06468 0.15 +0.2 251,952 + MPMX19_06468 0.15 +0.0 251,953 - MPMX19_06468 0.15 +1.0 252,328 + MPMX19_06468 0.46 -0.2 252,329 - MPMX19_06468 0.46 +0.6 252,329 - MPMX19_06468 0.46 -0.5 252,580 + MPMX19_06468 0.67 -0.1 252,580 + MPMX19_06468 0.67 +0.0 252,580 + MPMX19_06468 0.67 -0.9 252,581 - MPMX19_06468 0.67 -1.5 252,581 - MPMX19_06468 0.67 -0.1
Or see this region's nucleotide sequence