Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05377 and MPMX19_05378 are separated by 240 nucleotides MPMX19_05378 and MPMX19_05379 are separated by 261 nucleotides
MPMX19_05377: MPMX19_05377 - hypothetical protein, at 50,117 to 50,806
_05377
MPMX19_05378: MPMX19_05378 - hypothetical protein, at 51,047 to 52,564
_05378
MPMX19_05379: MPMX19_05379 - hypothetical protein, at 52,826 to 54,238
_05379
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 50.103 kb on + strand at 50.103 kb on + strand at 50.103 kb on + strand at 50.104 kb on - strand at 50.179 kb on - strand at 50.202 kb on + strand, within MPMX19_05377 at 50.202 kb on + strand, within MPMX19_05377 at 50.202 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.773 kb on + strand at 50.773 kb on + strand at 50.774 kb on - strand at 50.774 kb on - strand at 50.774 kb on - strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.849 kb on + strand at 50.850 kb on - strand at 50.856 kb on + strand at 50.856 kb on + strand at 50.856 kb on + strand at 50.857 kb on - strand at 50.857 kb on - strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 51.053 kb on + strand at 51.054 kb on - strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.230 kb on - strand, within MPMX19_05378 at 51.278 kb on + strand, within MPMX19_05378 at 51.278 kb on + strand, within MPMX19_05378 at 51.279 kb on - strand, within MPMX19_05378 at 51.279 kb on - strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.463 kb on + strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.807 kb on + strand, within MPMX19_05378 at 51.807 kb on + strand, within MPMX19_05378 at 51.808 kb on - strand, within MPMX19_05378 at 51.808 kb on - strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.328 kb on + strand, within MPMX19_05378 at 52.329 kb on - strand, within MPMX19_05378 at 52.329 kb on - strand, within MPMX19_05378 at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.615 kb on - strand at 52.649 kb on - strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 50,103 + -0.5 50,103 + +0.7 50,103 + -0.0 50,104 - -0.3 50,179 - -0.8 50,202 + MPMX19_05377 0.12 +0.2 50,202 + MPMX19_05377 0.12 +0.0 50,202 + MPMX19_05377 0.12 -0.4 50,208 + MPMX19_05377 0.13 -2.0 50,208 + MPMX19_05377 0.13 -0.6 50,208 + MPMX19_05377 0.13 -0.8 50,208 + MPMX19_05377 0.13 +0.5 50,208 + MPMX19_05377 0.13 -0.8 50,208 + MPMX19_05377 0.13 +0.9 50,208 + MPMX19_05377 0.13 -1.6 50,278 + MPMX19_05377 0.23 -0.4 50,278 + MPMX19_05377 0.23 -0.3 50,278 + MPMX19_05377 0.23 +0.2 50,278 + MPMX19_05377 0.23 +0.5 50,278 + MPMX19_05377 0.23 -0.3 50,278 + MPMX19_05377 0.23 -1.6 50,278 + MPMX19_05377 0.23 +0.3 50,278 + MPMX19_05377 0.23 +0.7 50,278 + MPMX19_05377 0.23 +1.2 50,278 + MPMX19_05377 0.23 -0.8 50,278 + MPMX19_05377 0.23 -0.3 50,278 + MPMX19_05377 0.23 +0.3 50,278 + MPMX19_05377 0.23 +0.5 50,279 - MPMX19_05377 0.23 -0.4 50,279 - MPMX19_05377 0.23 -0.7 50,279 - MPMX19_05377 0.23 -0.4 50,279 - MPMX19_05377 0.23 -1.4 50,279 - MPMX19_05377 0.23 -0.3 50,279 - MPMX19_05377 0.23 +0.5 50,279 - MPMX19_05377 0.23 +0.0 50,279 - MPMX19_05377 0.23 -1.6 50,279 - MPMX19_05377 0.23 -0.3 50,279 - MPMX19_05377 0.23 -0.6 50,279 - MPMX19_05377 0.23 -0.9 50,773 + -1.3 50,773 + -0.3 50,774 - -1.6 50,774 - +0.2 50,774 - -0.2 50,788 + -0.3 50,788 + -0.3 50,788 + -1.2 50,788 + +0.2 50,789 - -1.3 50,789 - -0.5 50,789 - +0.2 50,789 - -0.8 50,789 - -0.5 50,789 - -0.2 50,849 + -2.6 50,850 - +1.5 50,856 + +0.5 50,856 + -0.0 50,856 + +1.4 50,857 - -0.4 50,857 - -0.1 50,929 + +0.7 50,929 + -0.8 50,929 + +0.4 50,929 + -0.6 50,929 + -0.1 50,930 - -0.7 50,930 - -0.9 50,930 - -0.5 50,930 - -2.5 50,930 - -0.1 51,053 + +0.1 51,054 - -1.5 51,138 + -0.3 51,138 + +0.2 51,138 + +0.1 51,138 + -0.0 51,138 + -0.6 51,138 + -2.8 51,138 + -1.8 51,138 + -1.5 51,138 + -1.3 51,138 + -0.6 51,138 + -0.0 51,138 + +0.1 51,138 + -0.3 51,138 + +1.7 51,138 + -0.0 51,138 + +2.0 51,138 + -1.8 51,138 + -0.8 51,138 + -0.0 51,138 + -0.9 51,138 + +0.2 51,138 + -1.8 51,138 + -2.2 51,138 + -0.5 51,139 - +0.9 51,139 - +0.0 51,139 - +0.5 51,139 - +1.0 51,139 - -1.5 51,139 - +0.7 51,139 - -0.6 51,139 - -0.9 51,139 - -0.2 51,139 - +0.5 51,139 - -0.5 51,139 - -0.3 51,139 - -0.7 51,139 - -0.0 51,230 - MPMX19_05378 0.12 +0.0 51,278 + MPMX19_05378 0.15 -1.3 51,278 + MPMX19_05378 0.15 -0.4 51,279 - MPMX19_05378 0.15 +0.7 51,279 - MPMX19_05378 0.15 +0.1 51,462 + MPMX19_05378 0.27 -0.5 51,462 + MPMX19_05378 0.27 +0.4 51,462 + MPMX19_05378 0.27 +0.1 51,462 + MPMX19_05378 0.27 +0.1 51,462 + MPMX19_05378 0.27 +0.0 51,462 + MPMX19_05378 0.27 -0.6 51,462 + MPMX19_05378 0.27 -0.2 51,462 + MPMX19_05378 0.27 -0.5 51,462 + MPMX19_05378 0.27 -0.8 51,463 + MPMX19_05378 0.27 +0.5 51,463 - MPMX19_05378 0.27 -1.8 51,463 - MPMX19_05378 0.27 +0.2 51,463 - MPMX19_05378 0.27 -0.9 51,463 - MPMX19_05378 0.27 -0.3 51,463 - MPMX19_05378 0.27 +0.9 51,463 - MPMX19_05378 0.27 +0.1 51,774 + MPMX19_05378 0.48 -0.0 51,774 + MPMX19_05378 0.48 -0.4 51,774 + MPMX19_05378 0.48 -0.8 51,774 + MPMX19_05378 0.48 -0.6 51,774 + MPMX19_05378 0.48 +0.3 51,775 - MPMX19_05378 0.48 -0.5 51,775 - MPMX19_05378 0.48 -0.1 51,775 - MPMX19_05378 0.48 +0.0 51,807 + MPMX19_05378 0.50 +0.4 51,807 + MPMX19_05378 0.50 -1.6 51,808 - MPMX19_05378 0.50 -0.0 51,808 - MPMX19_05378 0.50 -1.0 51,852 + MPMX19_05378 0.53 -0.4 51,852 + MPMX19_05378 0.53 +0.6 51,852 + MPMX19_05378 0.53 -0.5 51,852 + MPMX19_05378 0.53 +1.3 51,852 + MPMX19_05378 0.53 +0.2 51,852 + MPMX19_05378 0.53 +2.5 51,852 + MPMX19_05378 0.53 -0.1 51,852 + MPMX19_05378 0.53 -0.8 51,852 + MPMX19_05378 0.53 +0.1 51,852 + MPMX19_05378 0.53 +0.9 51,852 + MPMX19_05378 0.53 -0.1 51,852 + MPMX19_05378 0.53 +0.3 51,852 + MPMX19_05378 0.53 -0.3 51,852 + MPMX19_05378 0.53 +0.9 51,853 - MPMX19_05378 0.53 -2.2 51,853 - MPMX19_05378 0.53 +0.3 51,853 - MPMX19_05378 0.53 -0.9 51,853 - MPMX19_05378 0.53 -1.1 51,853 - MPMX19_05378 0.53 +0.1 51,853 - MPMX19_05378 0.53 +0.5 51,853 - MPMX19_05378 0.53 -0.1 51,853 - MPMX19_05378 0.53 +0.7 51,853 - MPMX19_05378 0.53 +0.7 51,853 - MPMX19_05378 0.53 -0.3 51,985 + MPMX19_05378 0.62 +0.1 51,985 + MPMX19_05378 0.62 -0.2 51,985 + MPMX19_05378 0.62 -2.0 51,986 - MPMX19_05378 0.62 +0.9 51,986 - MPMX19_05378 0.62 +0.8 51,986 - MPMX19_05378 0.62 -0.5 51,986 - MPMX19_05378 0.62 -1.5 52,011 + MPMX19_05378 0.64 -0.8 52,011 + MPMX19_05378 0.64 -0.5 52,011 + MPMX19_05378 0.64 -0.1 52,011 + MPMX19_05378 0.64 +0.2 52,012 - MPMX19_05378 0.64 -0.0 52,012 - MPMX19_05378 0.64 -1.2 52,012 - MPMX19_05378 0.64 +0.4 52,012 - MPMX19_05378 0.64 -0.1 52,314 + MPMX19_05378 0.83 +0.1 52,314 + MPMX19_05378 0.83 +0.1 52,314 + MPMX19_05378 0.83 +0.5 52,314 + MPMX19_05378 0.83 -1.0 52,314 + MPMX19_05378 0.83 +0.0 52,314 + MPMX19_05378 0.83 -0.5 52,314 + MPMX19_05378 0.83 +0.0 52,314 + MPMX19_05378 0.83 +0.9 52,314 + MPMX19_05378 0.83 -0.0 52,314 + MPMX19_05378 0.83 +1.0 52,314 + MPMX19_05378 0.83 -0.2 52,314 + MPMX19_05378 0.83 -0.6 52,314 + MPMX19_05378 0.83 -0.5 52,314 + MPMX19_05378 0.83 -0.5 52,314 + MPMX19_05378 0.83 -0.8 52,314 + MPMX19_05378 0.83 +0.2 52,314 + MPMX19_05378 0.83 -0.1 52,315 - MPMX19_05378 0.84 -0.1 52,315 - MPMX19_05378 0.84 +1.1 52,315 - MPMX19_05378 0.84 -0.0 52,315 - MPMX19_05378 0.84 +0.5 52,315 - MPMX19_05378 0.84 -0.5 52,315 - MPMX19_05378 0.84 -0.5 52,315 - MPMX19_05378 0.84 +0.3 52,315 - MPMX19_05378 0.84 +0.3 52,315 - MPMX19_05378 0.84 -1.0 52,315 - MPMX19_05378 0.84 +0.3 52,315 - MPMX19_05378 0.84 +0.4 52,315 - MPMX19_05378 0.84 -1.3 52,315 - MPMX19_05378 0.84 +0.1 52,315 - MPMX19_05378 0.84 -0.9 52,315 - MPMX19_05378 0.84 -0.5 52,315 - MPMX19_05378 0.84 -0.1 52,315 - MPMX19_05378 0.84 -0.2 52,315 - MPMX19_05378 0.84 -1.0 52,315 - MPMX19_05378 0.84 -0.6 52,315 - MPMX19_05378 0.84 +0.7 52,328 + MPMX19_05378 0.84 -1.3 52,329 - MPMX19_05378 0.84 -0.5 52,329 - MPMX19_05378 0.84 +0.4 52,507 + -0.8 52,507 + -0.8 52,507 + -0.9 52,507 + -0.0 52,507 + -0.9 52,507 + -0.2 52,507 + +1.0 52,507 + -1.0 52,508 - +0.2 52,508 - +0.0 52,508 - -1.3 52,508 - -0.9 52,615 - -0.0 52,649 - +0.2 52,827 + +0.3 52,827 + -0.6 52,827 + +0.2 52,827 + -0.6 52,827 + -0.3 52,827 + -2.2 52,828 - +0.3 52,828 - +1.4 52,828 - -0.2 52,828 - -0.5 52,828 - -0.3 52,828 - +0.5 52,828 - -1.8 52,828 - -0.2
Or see this region's nucleotide sequence