Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05331

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05330 and MPMX19_05331 overlap by 4 nucleotides MPMX19_05330: MPMX19_05330 - Tagatose-6-phosphate kinase, at 871,635 to 872,603 _05330 MPMX19_05331: MPMX19_05331 - hypothetical protein, at 872,600 to 875,140 _05331 Position (kb) 872 873 874 875 876Strain fitness (log2 ratio) -2 -1 0 1at 871.695 kb on + strandat 872.134 kb on + strand, within MPMX19_05330at 872.934 kb on + strand, within MPMX19_05331at 872.934 kb on + strand, within MPMX19_05331at 872.934 kb on + strand, within MPMX19_05331at 872.935 kb on - strand, within MPMX19_05331at 872.935 kb on - strand, within MPMX19_05331at 872.935 kb on - strand, within MPMX19_05331at 873.168 kb on + strand, within MPMX19_05331at 873.169 kb on - strand, within MPMX19_05331at 873.169 kb on - strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.360 kb on + strand, within MPMX19_05331at 873.360 kb on + strand, within MPMX19_05331at 873.360 kb on + strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.618 kb on + strand, within MPMX19_05331at 873.619 kb on - strand, within MPMX19_05331at 873.619 kb on - strand, within MPMX19_05331at 875.007 kb on + strandat 875.008 kb on - strandat 875.149 kb on + strandat 875.149 kb on + strandat 875.149 kb on + strandat 875.150 kb on - strandat 875.150 kb on - strandat 875.150 kb on - strandat 875.150 kb on - strandat 875.197 kb on + strandat 875.197 kb on + strandat 875.233 kb on + strandat 875.351 kb on + strandat 875.351 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
871,695 + -1.0
872,134 + MPMX19_05330 0.51 +0.6
872,934 + MPMX19_05331 0.13 +0.3
872,934 + MPMX19_05331 0.13 -0.6
872,934 + MPMX19_05331 0.13 -0.4
872,935 - MPMX19_05331 0.13 +0.6
872,935 - MPMX19_05331 0.13 -0.1
872,935 - MPMX19_05331 0.13 -0.3
873,168 + MPMX19_05331 0.22 +0.1
873,169 - MPMX19_05331 0.22 +1.7
873,169 - MPMX19_05331 0.22 +0.8
873,351 + MPMX19_05331 0.30 +0.2
873,351 + MPMX19_05331 0.30 -0.3
873,351 + MPMX19_05331 0.30 -0.4
873,351 + MPMX19_05331 0.30 -0.7
873,352 - MPMX19_05331 0.30 +0.0
873,352 - MPMX19_05331 0.30 +0.0
873,352 - MPMX19_05331 0.30 -0.3
873,352 - MPMX19_05331 0.30 -1.4
873,352 - MPMX19_05331 0.30 +0.4
873,360 + MPMX19_05331 0.30 -0.0
873,360 + MPMX19_05331 0.30 -1.7
873,360 + MPMX19_05331 0.30 +0.7
873,361 - MPMX19_05331 0.30 +1.4
873,361 - MPMX19_05331 0.30 -1.7
873,361 - MPMX19_05331 0.30 -0.7
873,361 - MPMX19_05331 0.30 -0.6
873,618 + MPMX19_05331 0.40 +0.2
873,618 + MPMX19_05331 0.40 -0.9
873,618 + MPMX19_05331 0.40 +1.3
873,618 + MPMX19_05331 0.40 +0.0
873,618 + MPMX19_05331 0.40 +0.8
873,618 + MPMX19_05331 0.40 +0.4
873,618 + MPMX19_05331 0.40 -0.7
873,618 + MPMX19_05331 0.40 -0.6
873,619 - MPMX19_05331 0.40 +0.1
873,619 - MPMX19_05331 0.40 -0.5
875,007 + +0.2
875,008 - -0.5
875,149 + +1.0
875,149 + +1.2
875,149 + -2.7
875,150 - -2.2
875,150 - +0.8
875,150 - -0.7
875,150 - -0.6
875,197 + -0.7
875,197 + -0.7
875,233 + -0.4
875,351 + -1.5
875,351 + +0.3

Or see this region's nucleotide sequence