Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04824

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
228,853	+		MPMX19_04823	0.34	-1.9
228,853	+		MPMX19_04823	0.34	-0.4
228,853	+		MPMX19_04823	0.34	-0.8
228,853	+		MPMX19_04823	0.34	-0.7
228,854	-		MPMX19_04823	0.34	-0.8
228,854	-		MPMX19_04823	0.34	-0.1
228,854	-		MPMX19_04823	0.34	-0.9
229,027	+		MPMX19_04823	0.47	+0.2
229,027	+		MPMX19_04823	0.47	-1.8
229,027	+		MPMX19_04823	0.47	-1.1
229,027	+		MPMX19_04823	0.47	+0.1
229,027	+		MPMX19_04823	0.47	-0.9
229,028	-		MPMX19_04823	0.47	-0.8
229,028	-		MPMX19_04823	0.47	+0.3
229,028	-		MPMX19_04823	0.47	+0.1
229,036	+		MPMX19_04823	0.47	+0.6
229,036	+		MPMX19_04823	0.47	-1.1
229,036	+		MPMX19_04823	0.47	-0.2
229,036	+		MPMX19_04823	0.47	-2.4
229,037	-		MPMX19_04823	0.47	-0.2
229,037	-		MPMX19_04823	0.47	-0.5
229,037	-		MPMX19_04823	0.47	-0.1
229,037	-		MPMX19_04823	0.47	-1.2
229,037	-		MPMX19_04823	0.47	-0.4
229,507	+		MPMX19_04823	0.83	-0.5
229,507	+		MPMX19_04823	0.83	-0.6
229,507	+		MPMX19_04823	0.83	+0.2
229,507	+		MPMX19_04823	0.83	-1.6
229,507	+		MPMX19_04823	0.83	+0.1
229,507	+		MPMX19_04823	0.83	-2.3
229,507	+		MPMX19_04823	0.83	+0.3
229,507	+		MPMX19_04823	0.83	+0.2
229,507	+		MPMX19_04823	0.83	+0.4
229,507	+		MPMX19_04823	0.83	-1.9
229,507	+		MPMX19_04823	0.83	-0.5
229,507	+		MPMX19_04823	0.83	-0.1
229,507	+		MPMX19_04823	0.83	-1.7
229,507	+		MPMX19_04823	0.83	+0.8
229,507	+		MPMX19_04823	0.83	-3.1
229,507	+		MPMX19_04823	0.83	-0.7
229,507	+		MPMX19_04823	0.83	-0.5
229,507	+		MPMX19_04823	0.83	-1.4
229,508	-		MPMX19_04823	0.83	+1.1
229,508	-		MPMX19_04823	0.83	+1.2
229,508	-		MPMX19_04823	0.83	-0.2
229,508	-		MPMX19_04823	0.83	-0.5
229,508	-		MPMX19_04823	0.83	+2.2
229,508	-		MPMX19_04823	0.83	+0.6
229,508	-		MPMX19_04823	0.83	+0.4
229,508	-		MPMX19_04823	0.83	-0.4
229,508	-		MPMX19_04823	0.83	-1.0
229,508	-		MPMX19_04823	0.83	+0.8
229,508	-		MPMX19_04823	0.83	-0.4
229,508	-		MPMX19_04823	0.83	-0.4
229,508	-		MPMX19_04823	0.83	-1.5
229,508	-		MPMX19_04823	0.83	-0.7
229,508	-		MPMX19_04823	0.83	-0.9
229,582	+		MPMX19_04823	0.89	-0.4
229,582	+		MPMX19_04823	0.89	-1.1
229,582	+		MPMX19_04823	0.89	-0.2
229,582	+		MPMX19_04823	0.89	+0.1
229,582	+		MPMX19_04823	0.89	-1.1
229,582	+		MPMX19_04823	0.89	-1.2
229,582	+		MPMX19_04823	0.89	-0.7
229,582	+		MPMX19_04823	0.89	-0.4
229,582	+		MPMX19_04823	0.89	-0.4
229,582	+		MPMX19_04823	0.89	+0.4
229,582	+		MPMX19_04823	0.89	-0.9
229,582	+		MPMX19_04823	0.89	-1.4
229,583	-		MPMX19_04823	0.89	-1.2
229,583	-		MPMX19_04823	0.89	-0.2
229,583	-		MPMX19_04823	0.89	-0.8
229,583	-		MPMX19_04823	0.89	-1.2
229,583	-		MPMX19_04823	0.89	-1.7
229,583	-		MPMX19_04823	0.89	+0.1
229,583	-		MPMX19_04823	0.89	-0.7
229,583	-		MPMX19_04823	0.89	-0.9
229,583	-		MPMX19_04823	0.89	-0.5
229,583	-		MPMX19_04823	0.89	-0.4
229,583	-		MPMX19_04823	0.89	+0.2
229,583	-		MPMX19_04823	0.89	-2.1
229,583	-		MPMX19_04823	0.89	+0.6
229,583	-		MPMX19_04823	0.89	+1.1
229,583	-		MPMX19_04823	0.89	+0.6
229,583	-		MPMX19_04823	0.89	-0.6
229,584	+		MPMX19_04823	0.89	-0.6
229,585	-		MPMX19_04823	0.89	+0.6
229,585	-		MPMX19_04823	0.89	-0.2
229,657	+				-1.5
229,658	-				-0.4
229,663	+				-0.2
229,663	+				+0.2
229,664	-				-0.7
229,664	-				+0.5
229,664	-				-0.9
229,664	-				-0.0
229,664	-				-2.2
229,681	+				-1.9
229,681	+				+0.5
229,681	+				-0.9
229,681	+				-2.4
229,681	+				+0.8
229,681	+				-1.4
229,681	+				+0.6
229,682	-				+0.1
229,682	-				-0.7
229,682	-				+0.8
229,682	-				-0.1
229,682	-				-1.3
229,729	+				+0.1
229,729	+				-0.8
229,730	-				-0.8
229,730	-				-0.8
229,825	-				+0.6
229,914	+				-0.3
229,914	+				-0.6
229,914	+				+0.5
229,914	+				-0.4
229,914	+				-0.8
229,915	-				-0.4
229,915	-				+0.4
229,915	-				-0.5
229,915	-				-1.1
229,915	-				-0.8
230,127	+		MPMX19_04824	0.16	-0.5
230,127	+		MPMX19_04824	0.16	+0.1
230,127	+		MPMX19_04824	0.16	-1.6
230,127	+		MPMX19_04824	0.16	+0.4
230,128	-		MPMX19_04824	0.16	-0.7
230,128	-		MPMX19_04824	0.16	-0.9
230,128	-		MPMX19_04824	0.16	-0.9
230,128	-		MPMX19_04824	0.16	-0.3
230,286	+		MPMX19_04824	0.24	+0.7
230,286	+		MPMX19_04824	0.24	-1.8
230,286	+		MPMX19_04824	0.24	-0.8
230,286	+		MPMX19_04824	0.24	-0.9
230,287	-		MPMX19_04824	0.24	-0.8
230,287	-		MPMX19_04824	0.24	+0.1
230,287	-		MPMX19_04824	0.24	-0.5
230,475	+		MPMX19_04824	0.33	-1.3
230,475	+		MPMX19_04824	0.33	+1.4
230,475	+		MPMX19_04824	0.33	-0.2
230,476	-		MPMX19_04824	0.33	-0.8
230,476	-		MPMX19_04824	0.33	+0.2
230,769	+		MPMX19_04824	0.46	-0.3
230,769	+		MPMX19_04824	0.46	-0.7
230,769	+		MPMX19_04824	0.46	-0.3
230,770	-		MPMX19_04824	0.46	-1.9
230,770	-		MPMX19_04824	0.46	+0.4
230,770	-		MPMX19_04824	0.46	+1.7
230,770	-		MPMX19_04824	0.46	-2.2
230,770	-		MPMX19_04824	0.46	-1.0
230,770	-		MPMX19_04824	0.46	-0.3
230,770	-		MPMX19_04824	0.46	-1.3
230,770	-		MPMX19_04824	0.46	-1.2
230,979	+		MPMX19_04824	0.56	+0.9
230,979	+		MPMX19_04824	0.56	+0.1
230,979	+		MPMX19_04824	0.56	-0.2
230,980	-		MPMX19_04824	0.56	-0.7
230,980	-		MPMX19_04824	0.56	-0.5
230,980	-		MPMX19_04824	0.56	-0.1
230,980	-		MPMX19_04824	0.56	-0.9
231,364	-		MPMX19_04824	0.74	+0.2
231,462	+		MPMX19_04824	0.78	-0.9
231,462	+		MPMX19_04824	0.78	-0.3
231,462	+		MPMX19_04824	0.78	-1.1
231,462	+		MPMX19_04824	0.78	+1.2
231,463	-		MPMX19_04824	0.78	-1.9
231,463	-		MPMX19_04824	0.78	-0.3
231,504	+		MPMX19_04824	0.80	-1.3
231,504	+		MPMX19_04824	0.80	+0.4
231,505	-		MPMX19_04824	0.80	-0.8
231,505	-		MPMX19_04824	0.80	+0.4
231,505	-		MPMX19_04824	0.80	-0.5
231,505	-		MPMX19_04824	0.80	-1.2
231,505	-		MPMX19_04824	0.80	+0.1
231,516	+		MPMX19_04824	0.81	-0.3
231,516	+		MPMX19_04824	0.81	-1.9
231,516	+		MPMX19_04824	0.81	+0.9
231,516	+		MPMX19_04824	0.81	-1.2
231,516	+		MPMX19_04824	0.81	+1.2
231,516	+		MPMX19_04824	0.81	+0.3
231,517	-		MPMX19_04824	0.81	-0.9
231,517	-		MPMX19_04824	0.81	+0.9
231,517	-		MPMX19_04824	0.81	-0.7
231,517	-		MPMX19_04824	0.81	+0.1
231,517	-		MPMX19_04824	0.81	-0.1
231,517	-		MPMX19_04824	0.81	-1.2
231,517	-		MPMX19_04824	0.81	-0.0
231,517	-		MPMX19_04824	0.81	-0.8
231,517	-		MPMX19_04824	0.81	-0.9
231,517	-		MPMX19_04824	0.81	-1.3
231,517	-		MPMX19_04824	0.81	-0.7
231,555	+		MPMX19_04824	0.83	-0.8
231,555	+		MPMX19_04824	0.83	-0.3
231,556	-		MPMX19_04824	0.83	+0.2
231,600	+		MPMX19_04824	0.85	-0.8
231,600	+		MPMX19_04824	0.85	+0.2
231,600	+		MPMX19_04824	0.85	+0.8
231,600	+		MPMX19_04824	0.85	-1.5
231,601	-		MPMX19_04824	0.85	-0.3
231,601	-		MPMX19_04824	0.85	+0.4
231,601	-		MPMX19_04824	0.85	+0.2
231,663	+		MPMX19_04824	0.88	+0.1
231,663	+		MPMX19_04824	0.88	+0.8
231,663	+		MPMX19_04824	0.88	-0.9
231,663	+		MPMX19_04824	0.88	+0.3
231,664	-		MPMX19_04824	0.88	+0.7
231,664	-		MPMX19_04824	0.88	-1.9
231,664	-		MPMX19_04824	0.88	-0.3
231,664	-		MPMX19_04824	0.88	-0.3
231,690	+		MPMX19_04824	0.89	-1.8
231,690	+		MPMX19_04824	0.89	-0.9
231,690	+		MPMX19_04824	0.89	-0.4
231,690	+		MPMX19_04824	0.89	+0.7
231,773	+				-0.7
231,773	+				+0.2
231,773	+				+0.1
231,774	-				-0.1
231,774	-				-0.6
231,882	+				-0.3
231,882	+				+0.4
231,882	+				+0.2
231,882	+				-0.8
231,883	-				+1.1
231,883	-				+0.7
232,047	+				-0.7
232,047	+				-1.7
232,048	-				+0.6
232,048	-				-0.2
232,060	+				+0.7
232,061	-				-0.7
232,061	-				+1.4