Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04518

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04517 and MPMX19_04518 are separated by 2 nucleotidesMPMX19_04518 and MPMX19_04519 are separated by 431 nucleotides MPMX19_04517: MPMX19_04517 - Glycine cleavage system transcriptional activator, at 889,890 to 890,936 _04517 MPMX19_04518: MPMX19_04518 - Acetyl-CoA:oxalate CoA-transferase, at 890,939 to 892,141 _04518 MPMX19_04519: MPMX19_04519 - hypothetical protein, at 892,573 to 893,742 _04519 Position (kb) 890 891 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.996 kb on + strand, within MPMX19_04517at 889.997 kb on - strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.827 kb on + strand, within MPMX19_04517at 890.827 kb on + strand, within MPMX19_04517at 890.828 kb on - strand, within MPMX19_04517at 890.828 kb on - strand, within MPMX19_04517at 891.363 kb on + strand, within MPMX19_04518at 891.478 kb on - strand, within MPMX19_04518at 891.723 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.795 kb on + strand, within MPMX19_04518at 891.795 kb on + strand, within MPMX19_04518at 891.911 kb on - strand, within MPMX19_04518at 891.911 kb on - strand, within MPMX19_04518at 891.945 kb on + strand, within MPMX19_04518at 891.946 kb on - strand, within MPMX19_04518at 892.056 kb on + strandat 892.057 kb on - strandat 892.274 kb on + strandat 892.386 kb on - strandat 892.428 kb on + strandat 892.428 kb on + strandat 892.429 kb on - strandat 892.612 kb on + strandat 892.612 kb on + strandat 892.613 kb on - strandat 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.790 kb on - strand, within MPMX19_04519at 892.790 kb on - strand, within MPMX19_04519at 892.791 kb on + strand, within MPMX19_04519at 892.791 kb on + strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.991 kb on - strand, within MPMX19_04519at 892.991 kb on - strand, within MPMX19_04519at 892.991 kb on - strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.049 kb on + strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.059 kb on + strand, within MPMX19_04519at 893.059 kb on + strand, within MPMX19_04519

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
889,993 + -1.3
889,993 + +1.5
889,993 + -0.7
889,993 + +1.0
889,993 + -0.5
889,993 + -1.0
889,993 + +0.5
889,993 + +1.0
889,993 + -0.2
889,993 + +0.5
889,993 + +0.4
889,993 + +1.3
889,993 + +0.4
889,993 + -1.9
889,993 + +0.2
889,994 - -1.5
889,994 - -0.0
889,994 - -0.3
889,994 - -0.3
889,994 - +0.2
889,994 - +0.6
889,994 - -1.6
889,994 - -0.7
889,994 - -1.1
889,994 - -0.7
889,994 - -2.2
889,994 - -1.2
889,996 + MPMX19_04517 0.10 +0.1
889,997 - MPMX19_04517 0.10 -1.4
890,365 + MPMX19_04517 0.45 +0.2
890,365 + MPMX19_04517 0.45 -1.3
890,365 + MPMX19_04517 0.45 -0.4
890,365 + MPMX19_04517 0.45 -1.6
890,365 + MPMX19_04517 0.45 -1.8
890,365 + MPMX19_04517 0.45 +0.2
890,365 + MPMX19_04517 0.45 -0.6
890,365 + MPMX19_04517 0.45 -1.3
890,365 + MPMX19_04517 0.45 +0.2
890,365 + MPMX19_04517 0.45 -0.3
890,365 + MPMX19_04517 0.45 -0.6
890,365 + MPMX19_04517 0.45 -0.7
890,365 + MPMX19_04517 0.45 -0.7
890,365 + MPMX19_04517 0.45 -0.6
890,365 + MPMX19_04517 0.45 -1.3
890,365 + MPMX19_04517 0.45 -0.7
890,366 - MPMX19_04517 0.45 +1.1
890,366 - MPMX19_04517 0.45 +0.2
890,366 - MPMX19_04517 0.45 +0.9
890,366 - MPMX19_04517 0.45 -1.3
890,366 - MPMX19_04517 0.45 +0.4
890,366 - MPMX19_04517 0.45 +0.0
890,366 - MPMX19_04517 0.45 +1.2
890,366 - MPMX19_04517 0.45 +0.2
890,366 - MPMX19_04517 0.45 -0.8
890,366 - MPMX19_04517 0.45 +0.2
890,366 - MPMX19_04517 0.45 +0.2
890,366 - MPMX19_04517 0.45 +0.1
890,366 - MPMX19_04517 0.45 +1.0
890,366 - MPMX19_04517 0.45 -0.7
890,366 - MPMX19_04517 0.45 -1.6
890,366 - MPMX19_04517 0.45 -1.1
890,366 - MPMX19_04517 0.45 +0.3
890,825 + MPMX19_04517 0.89 -0.6
890,825 + MPMX19_04517 0.89 +0.8
890,825 + MPMX19_04517 0.89 -0.4
890,825 + MPMX19_04517 0.89 +0.4
890,825 + MPMX19_04517 0.89 +0.8
890,825 + MPMX19_04517 0.89 -1.5
890,825 + MPMX19_04517 0.89 +0.1
890,825 + MPMX19_04517 0.89 -1.2
890,825 + MPMX19_04517 0.89 -2.1
890,826 - MPMX19_04517 0.89 -0.3
890,826 - MPMX19_04517 0.89 -0.7
890,826 - MPMX19_04517 0.89 -2.3
890,826 - MPMX19_04517 0.89 -0.5
890,826 - MPMX19_04517 0.89 -0.8
890,826 - MPMX19_04517 0.89 -0.9
890,826 - MPMX19_04517 0.89 +0.7
890,826 - MPMX19_04517 0.89 +0.9
890,826 - MPMX19_04517 0.89 -1.0
890,826 - MPMX19_04517 0.89 -0.9
890,827 + MPMX19_04517 0.89 -0.9
890,827 + MPMX19_04517 0.89 -0.8
890,828 - MPMX19_04517 0.90 +0.7
890,828 - MPMX19_04517 0.90 +0.7
891,363 + MPMX19_04518 0.35 -1.1
891,478 - MPMX19_04518 0.45 +0.4
891,723 + MPMX19_04518 0.65 +0.2
891,759 + MPMX19_04518 0.68 -0.7
891,759 + MPMX19_04518 0.68 +0.1
891,759 + MPMX19_04518 0.68 +0.6
891,759 + MPMX19_04518 0.68 +0.3
891,759 + MPMX19_04518 0.68 +1.7
891,760 - MPMX19_04518 0.68 +1.7
891,760 - MPMX19_04518 0.68 +0.5
891,760 - MPMX19_04518 0.68 +0.5
891,760 - MPMX19_04518 0.68 -0.3
891,760 - MPMX19_04518 0.68 +0.2
891,760 - MPMX19_04518 0.68 -0.0
891,760 - MPMX19_04518 0.68 +0.3
891,795 + MPMX19_04518 0.71 +0.5
891,795 + MPMX19_04518 0.71 -0.2
891,911 - MPMX19_04518 0.81 +0.1
891,911 - MPMX19_04518 0.81 -0.2
891,945 + MPMX19_04518 0.84 +0.5
891,946 - MPMX19_04518 0.84 +0.0
892,056 + -0.5
892,057 - -0.0
892,274 + -1.8
892,386 - +1.5
892,428 + -2.2
892,428 + -1.0
892,429 - +0.5
892,612 + -0.8
892,612 + -1.3
892,613 - +0.1
892,789 + MPMX19_04519 0.18 -1.0
892,789 + MPMX19_04519 0.18 -0.3
892,789 + MPMX19_04519 0.18 +1.2
892,789 + MPMX19_04519 0.18 +1.4
892,789 + MPMX19_04519 0.18 -0.0
892,790 - MPMX19_04519 0.19 -1.1
892,790 - MPMX19_04519 0.19 +0.4
892,791 + MPMX19_04519 0.19 -0.9
892,791 + MPMX19_04519 0.19 +0.4
892,792 - MPMX19_04519 0.19 -1.3
892,792 - MPMX19_04519 0.19 -1.5
892,792 - MPMX19_04519 0.19 -0.7
892,792 - MPMX19_04519 0.19 -1.3
892,792 - MPMX19_04519 0.19 +0.1
892,792 - MPMX19_04519 0.19 -1.0
892,810 + MPMX19_04519 0.20 -0.3
892,810 + MPMX19_04519 0.20 -0.2
892,810 + MPMX19_04519 0.20 -0.8
892,810 + MPMX19_04519 0.20 +0.1
892,810 + MPMX19_04519 0.20 -1.2
892,810 + MPMX19_04519 0.20 -0.3
892,810 + MPMX19_04519 0.20 -0.6
892,811 - MPMX19_04519 0.20 -0.2
892,811 - MPMX19_04519 0.20 +0.1
892,811 - MPMX19_04519 0.20 -0.3
892,811 - MPMX19_04519 0.20 -0.8
892,811 - MPMX19_04519 0.20 -0.6
892,811 - MPMX19_04519 0.20 +0.2
892,811 - MPMX19_04519 0.20 -1.4
892,843 + MPMX19_04519 0.23 +0.5
892,843 + MPMX19_04519 0.23 -0.6
892,843 + MPMX19_04519 0.23 -0.3
892,843 + MPMX19_04519 0.23 -0.9
892,843 + MPMX19_04519 0.23 -2.3
892,843 + MPMX19_04519 0.23 +1.1
892,843 + MPMX19_04519 0.23 -2.0
892,843 + MPMX19_04519 0.23 +0.3
892,843 + MPMX19_04519 0.23 +0.4
892,844 - MPMX19_04519 0.23 -0.6
892,844 - MPMX19_04519 0.23 +0.3
892,844 - MPMX19_04519 0.23 -0.0
892,844 - MPMX19_04519 0.23 +0.5
892,844 - MPMX19_04519 0.23 +0.2
892,844 - MPMX19_04519 0.23 -0.3
892,844 - MPMX19_04519 0.23 -1.3
892,844 - MPMX19_04519 0.23 +0.1
892,844 - MPMX19_04519 0.23 -1.0
892,912 + MPMX19_04519 0.29 -0.1
892,912 + MPMX19_04519 0.29 -0.5
892,912 + MPMX19_04519 0.29 +1.1
892,912 + MPMX19_04519 0.29 +0.4
892,912 + MPMX19_04519 0.29 +0.2
892,912 + MPMX19_04519 0.29 +1.9
892,912 + MPMX19_04519 0.29 -0.6
892,912 + MPMX19_04519 0.29 -0.0
892,912 + MPMX19_04519 0.29 -0.1
892,912 + MPMX19_04519 0.29 -0.7
892,912 + MPMX19_04519 0.29 -0.3
892,913 - MPMX19_04519 0.29 -2.0
892,913 - MPMX19_04519 0.29 -0.3
892,913 - MPMX19_04519 0.29 +0.5
892,913 - MPMX19_04519 0.29 -0.5
892,990 + MPMX19_04519 0.36 -0.1
892,990 + MPMX19_04519 0.36 -0.3
892,990 + MPMX19_04519 0.36 -0.3
892,990 + MPMX19_04519 0.36 -0.3
892,990 + MPMX19_04519 0.36 -1.4
892,991 - MPMX19_04519 0.36 -1.2
892,991 - MPMX19_04519 0.36 -1.3
892,991 - MPMX19_04519 0.36 +0.5
893,026 + MPMX19_04519 0.39 -2.2
893,026 + MPMX19_04519 0.39 +0.8
893,026 + MPMX19_04519 0.39 -0.9
893,026 + MPMX19_04519 0.39 -1.0
893,026 + MPMX19_04519 0.39 -3.3
893,026 + MPMX19_04519 0.39 -0.8
893,026 + MPMX19_04519 0.39 +1.9
893,026 + MPMX19_04519 0.39 -2.3
893,026 + MPMX19_04519 0.39 +0.5
893,026 + MPMX19_04519 0.39 +0.1
893,026 + MPMX19_04519 0.39 -0.1
893,027 - MPMX19_04519 0.39 -1.3
893,027 - MPMX19_04519 0.39 -0.7
893,027 - MPMX19_04519 0.39 -0.0
893,027 - MPMX19_04519 0.39 -0.5
893,027 - MPMX19_04519 0.39 -0.3
893,027 - MPMX19_04519 0.39 -0.4
893,027 - MPMX19_04519 0.39 -0.2
893,027 - MPMX19_04519 0.39 -1.2
893,027 - MPMX19_04519 0.39 -0.9
893,027 - MPMX19_04519 0.39 +0.7
893,027 - MPMX19_04519 0.39 -0.8
893,049 + MPMX19_04519 0.41 -0.0
893,050 - MPMX19_04519 0.41 -0.5
893,050 - MPMX19_04519 0.41 -1.0
893,050 - MPMX19_04519 0.41 +1.0
893,050 - MPMX19_04519 0.41 -0.5
893,050 - MPMX19_04519 0.41 -0.0
893,059 + MPMX19_04519 0.42 -0.4
893,059 + MPMX19_04519 0.42 -0.6

Or see this region's nucleotide sequence