Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04414

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04412 and MPMX19_04413 are separated by 194 nucleotidesMPMX19_04413 and MPMX19_04414 are separated by 126 nucleotidesMPMX19_04414 and MPMX19_04415 are separated by 129 nucleotides MPMX19_04412: MPMX19_04412 - hypothetical protein, at 775,718 to 776,125 _04412 MPMX19_04413: MPMX19_04413 - hypothetical protein, at 776,320 to 776,808 _04413 MPMX19_04414: MPMX19_04414 - hypothetical protein, at 776,935 to 777,657 _04414 MPMX19_04415: MPMX19_04415 - Vitamin B12 import ATP-binding protein BtuD, at 777,787 to 778,812 _04415 Position (kb) 776 777 778Strain fitness (log2 ratio) -3 -2 -1 0 1at 776.339 kb on + strandat 776.339 kb on + strandat 776.339 kb on + strandat 776.340 kb on - strandat 776.340 kb on - strandat 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.826 kb on + strandat 776.826 kb on + strandat 776.826 kb on + strandat 776.826 kb on + strandat 776.826 kb on + strandat 776.826 kb on + strandat 776.826 kb on + strandat 776.826 kb on + strandat 776.827 kb on - strandat 776.827 kb on - strandat 776.827 kb on - strandat 776.858 kb on + strandat 776.858 kb on + strandat 776.859 kb on - strandat 776.859 kb on - strandat 776.859 kb on - strandat 776.859 kb on - strandat 776.859 kb on - strandat 776.893 kb on - strandat 777.197 kb on + strand, within MPMX19_04414at 777.198 kb on - strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.266 kb on + strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.267 kb on - strand, within MPMX19_04414at 777.432 kb on + strand, within MPMX19_04414at 777.432 kb on + strand, within MPMX19_04414at 777.433 kb on - strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.434 kb on + strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.435 kb on - strand, within MPMX19_04414at 777.702 kb on + strandat 777.702 kb on + strandat 777.702 kb on + strandat 777.702 kb on + strandat 777.703 kb on - strandat 777.703 kb on - strandat 777.703 kb on - strandat 777.806 kb on + strandat 777.806 kb on + strandat 777.807 kb on - strandat 777.807 kb on - strandat 777.807 kb on - strandat 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.010 kb on + strand, within MPMX19_04415at 778.011 kb on - strand, within MPMX19_04415at 778.011 kb on - strand, within MPMX19_04415at 778.011 kb on - strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.073 kb on + strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.074 kb on - strand, within MPMX19_04415at 778.136 kb on + strand, within MPMX19_04415at 778.136 kb on + strand, within MPMX19_04415at 778.136 kb on + strand, within MPMX19_04415at 778.137 kb on - strand, within MPMX19_04415at 778.137 kb on - strand, within MPMX19_04415at 778.137 kb on - strand, within MPMX19_04415at 778.137 kb on - strand, within MPMX19_04415at 778.137 kb on - strand, within MPMX19_04415at 778.137 kb on - strand, within MPMX19_04415at 778.454 kb on + strand, within MPMX19_04415at 778.455 kb on - strand, within MPMX19_04415at 778.455 kb on - strand, within MPMX19_04415at 778.455 kb on - strand, within MPMX19_04415at 778.455 kb on - strand, within MPMX19_04415at 778.538 kb on + strand, within MPMX19_04415at 778.538 kb on + strand, within MPMX19_04415at 778.538 kb on + strand, within MPMX19_04415at 778.538 kb on + strand, within MPMX19_04415at 778.538 kb on + strand, within MPMX19_04415at 778.538 kb on + strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415at 778.539 kb on - strand, within MPMX19_04415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
776,339 + -1.3
776,339 + -0.4
776,339 + -0.6
776,340 - -1.6
776,340 - -1.6
776,612 + MPMX19_04413 0.60 -0.6
776,612 + MPMX19_04413 0.60 -0.7
776,612 + MPMX19_04413 0.60 -0.4
776,612 + MPMX19_04413 0.60 -2.9
776,612 + MPMX19_04413 0.60 +0.1
776,612 + MPMX19_04413 0.60 -0.8
776,612 + MPMX19_04413 0.60 -0.4
776,612 + MPMX19_04413 0.60 -1.0
776,612 + MPMX19_04413 0.60 -0.4
776,612 + MPMX19_04413 0.60 -0.2
776,612 + MPMX19_04413 0.60 -0.2
776,612 + MPMX19_04413 0.60 -0.4
776,612 + MPMX19_04413 0.60 -0.7
776,612 + MPMX19_04413 0.60 -0.8
776,612 + MPMX19_04413 0.60 -0.2
776,612 + MPMX19_04413 0.60 -1.8
776,612 + MPMX19_04413 0.60 +1.6
776,613 - MPMX19_04413 0.60 -0.7
776,613 - MPMX19_04413 0.60 -1.9
776,613 - MPMX19_04413 0.60 -0.3
776,613 - MPMX19_04413 0.60 -0.9
776,613 - MPMX19_04413 0.60 +0.3
776,613 - MPMX19_04413 0.60 +0.8
776,613 - MPMX19_04413 0.60 +0.6
776,613 - MPMX19_04413 0.60 -0.4
776,613 - MPMX19_04413 0.60 -0.6
776,613 - MPMX19_04413 0.60 -0.4
776,613 - MPMX19_04413 0.60 -0.9
776,613 - MPMX19_04413 0.60 +0.6
776,613 - MPMX19_04413 0.60 -0.0
776,613 - MPMX19_04413 0.60 -0.9
776,613 - MPMX19_04413 0.60 +0.5
776,613 - MPMX19_04413 0.60 +0.9
776,613 - MPMX19_04413 0.60 +0.3
776,613 - MPMX19_04413 0.60 -0.7
776,613 - MPMX19_04413 0.60 -1.1
776,613 - MPMX19_04413 0.60 -0.6
776,613 - MPMX19_04413 0.60 +1.1
776,613 - MPMX19_04413 0.60 -0.8
776,613 - MPMX19_04413 0.60 -0.8
776,613 - MPMX19_04413 0.60 +0.7
776,613 - MPMX19_04413 0.60 -0.3
776,613 - MPMX19_04413 0.60 -0.1
776,613 - MPMX19_04413 0.60 -0.7
776,613 - MPMX19_04413 0.60 -0.6
776,826 + +0.3
776,826 + -1.1
776,826 + -0.1
776,826 + -1.4
776,826 + -0.6
776,826 + -1.4
776,826 + -0.5
776,826 + -0.3
776,827 - +0.2
776,827 - -0.0
776,827 - +0.6
776,858 + -0.3
776,858 + -0.0
776,859 - +1.6
776,859 - -0.3
776,859 - -0.6
776,859 - +0.6
776,859 - -0.7
776,893 - -0.8
777,197 + MPMX19_04414 0.36 +0.1
777,198 - MPMX19_04414 0.36 +0.1
777,266 + MPMX19_04414 0.46 +0.8
777,266 + MPMX19_04414 0.46 -0.7
777,266 + MPMX19_04414 0.46 -0.2
777,266 + MPMX19_04414 0.46 -0.9
777,266 + MPMX19_04414 0.46 -0.8
777,266 + MPMX19_04414 0.46 -1.3
777,266 + MPMX19_04414 0.46 -0.2
777,266 + MPMX19_04414 0.46 +0.3
777,266 + MPMX19_04414 0.46 -0.2
777,266 + MPMX19_04414 0.46 -1.2
777,266 + MPMX19_04414 0.46 -0.2
777,266 + MPMX19_04414 0.46 -1.8
777,266 + MPMX19_04414 0.46 -0.2
777,266 + MPMX19_04414 0.46 +0.1
777,267 - MPMX19_04414 0.46 -1.0
777,267 - MPMX19_04414 0.46 -0.5
777,267 - MPMX19_04414 0.46 -0.5
777,267 - MPMX19_04414 0.46 -1.8
777,267 - MPMX19_04414 0.46 -0.0
777,267 - MPMX19_04414 0.46 -0.6
777,267 - MPMX19_04414 0.46 -0.8
777,267 - MPMX19_04414 0.46 -0.3
777,267 - MPMX19_04414 0.46 -0.9
777,267 - MPMX19_04414 0.46 +0.3
777,267 - MPMX19_04414 0.46 +0.3
777,267 - MPMX19_04414 0.46 +0.1
777,267 - MPMX19_04414 0.46 -2.0
777,267 - MPMX19_04414 0.46 +1.1
777,267 - MPMX19_04414 0.46 -0.7
777,267 - MPMX19_04414 0.46 +0.4
777,267 - MPMX19_04414 0.46 -1.8
777,267 - MPMX19_04414 0.46 +0.3
777,267 - MPMX19_04414 0.46 -1.3
777,267 - MPMX19_04414 0.46 +0.1
777,267 - MPMX19_04414 0.46 -1.9
777,267 - MPMX19_04414 0.46 -0.4
777,267 - MPMX19_04414 0.46 -0.9
777,432 + MPMX19_04414 0.69 +1.0
777,432 + MPMX19_04414 0.69 -0.8
777,433 - MPMX19_04414 0.69 -0.5
777,434 + MPMX19_04414 0.69 +0.1
777,434 + MPMX19_04414 0.69 -1.4
777,434 + MPMX19_04414 0.69 -0.0
777,434 + MPMX19_04414 0.69 -1.3
777,434 + MPMX19_04414 0.69 -0.8
777,434 + MPMX19_04414 0.69 -1.4
777,434 + MPMX19_04414 0.69 -2.3
777,434 + MPMX19_04414 0.69 -1.7
777,434 + MPMX19_04414 0.69 -1.1
777,434 + MPMX19_04414 0.69 -1.7
777,434 + MPMX19_04414 0.69 -0.8
777,434 + MPMX19_04414 0.69 +0.9
777,434 + MPMX19_04414 0.69 +0.8
777,434 + MPMX19_04414 0.69 +0.4
777,434 + MPMX19_04414 0.69 +0.2
777,434 + MPMX19_04414 0.69 -1.1
777,434 + MPMX19_04414 0.69 -2.4
777,434 + MPMX19_04414 0.69 -2.1
777,434 + MPMX19_04414 0.69 +1.4
777,434 + MPMX19_04414 0.69 -0.4
777,434 + MPMX19_04414 0.69 +0.6
777,434 + MPMX19_04414 0.69 -2.2
777,435 - MPMX19_04414 0.69 -0.4
777,435 - MPMX19_04414 0.69 -0.8
777,435 - MPMX19_04414 0.69 -1.0
777,435 - MPMX19_04414 0.69 -1.0
777,435 - MPMX19_04414 0.69 -0.8
777,435 - MPMX19_04414 0.69 +0.6
777,435 - MPMX19_04414 0.69 -2.0
777,435 - MPMX19_04414 0.69 -0.7
777,435 - MPMX19_04414 0.69 -0.4
777,435 - MPMX19_04414 0.69 +0.7
777,435 - MPMX19_04414 0.69 -1.4
777,435 - MPMX19_04414 0.69 -1.3
777,435 - MPMX19_04414 0.69 -2.8
777,435 - MPMX19_04414 0.69 -1.2
777,435 - MPMX19_04414 0.69 -1.0
777,435 - MPMX19_04414 0.69 +0.1
777,435 - MPMX19_04414 0.69 +0.4
777,702 + +0.4
777,702 + -1.0
777,702 + -1.3
777,702 + -0.0
777,703 - +0.4
777,703 - -0.6
777,703 - -1.3
777,806 + +0.7
777,806 + +0.1
777,807 - -1.2
777,807 - -0.6
777,807 - +0.1
778,010 + MPMX19_04415 0.22 +0.2
778,010 + MPMX19_04415 0.22 +1.3
778,010 + MPMX19_04415 0.22 +0.3
778,010 + MPMX19_04415 0.22 -0.3
778,010 + MPMX19_04415 0.22 -0.0
778,010 + MPMX19_04415 0.22 +0.2
778,010 + MPMX19_04415 0.22 +0.6
778,010 + MPMX19_04415 0.22 -0.0
778,010 + MPMX19_04415 0.22 -0.6
778,010 + MPMX19_04415 0.22 -1.8
778,010 + MPMX19_04415 0.22 -0.0
778,010 + MPMX19_04415 0.22 -0.1
778,010 + MPMX19_04415 0.22 -0.4
778,011 - MPMX19_04415 0.22 -0.0
778,011 - MPMX19_04415 0.22 +0.2
778,011 - MPMX19_04415 0.22 -1.0
778,073 + MPMX19_04415 0.28 +1.6
778,073 + MPMX19_04415 0.28 -0.0
778,073 + MPMX19_04415 0.28 +0.0
778,073 + MPMX19_04415 0.28 -0.1
778,073 + MPMX19_04415 0.28 -0.0
778,073 + MPMX19_04415 0.28 -1.0
778,073 + MPMX19_04415 0.28 -0.2
778,073 + MPMX19_04415 0.28 -1.1
778,073 + MPMX19_04415 0.28 -1.6
778,073 + MPMX19_04415 0.28 +0.2
778,073 + MPMX19_04415 0.28 -1.6
778,073 + MPMX19_04415 0.28 +0.6
778,073 + MPMX19_04415 0.28 +0.3
778,073 + MPMX19_04415 0.28 -0.5
778,073 + MPMX19_04415 0.28 -0.1
778,074 - MPMX19_04415 0.28 -0.5
778,074 - MPMX19_04415 0.28 +0.6
778,074 - MPMX19_04415 0.28 +0.3
778,074 - MPMX19_04415 0.28 +1.3
778,074 - MPMX19_04415 0.28 -0.7
778,074 - MPMX19_04415 0.28 -0.4
778,074 - MPMX19_04415 0.28 -1.0
778,074 - MPMX19_04415 0.28 -0.7
778,074 - MPMX19_04415 0.28 +0.6
778,074 - MPMX19_04415 0.28 +1.2
778,136 + MPMX19_04415 0.34 +1.0
778,136 + MPMX19_04415 0.34 -0.3
778,136 + MPMX19_04415 0.34 -0.3
778,137 - MPMX19_04415 0.34 -0.4
778,137 - MPMX19_04415 0.34 -1.6
778,137 - MPMX19_04415 0.34 +0.2
778,137 - MPMX19_04415 0.34 +0.7
778,137 - MPMX19_04415 0.34 -0.6
778,137 - MPMX19_04415 0.34 +0.5
778,454 + MPMX19_04415 0.65 +0.4
778,455 - MPMX19_04415 0.65 +0.2
778,455 - MPMX19_04415 0.65 -1.0
778,455 - MPMX19_04415 0.65 -0.4
778,455 - MPMX19_04415 0.65 -1.9
778,538 + MPMX19_04415 0.73 -0.0
778,538 + MPMX19_04415 0.73 +0.1
778,538 + MPMX19_04415 0.73 +0.6
778,538 + MPMX19_04415 0.73 -2.1
778,538 + MPMX19_04415 0.73 +0.8
778,538 + MPMX19_04415 0.73 -1.6
778,539 - MPMX19_04415 0.73 +0.8
778,539 - MPMX19_04415 0.73 -1.0
778,539 - MPMX19_04415 0.73 +0.4
778,539 - MPMX19_04415 0.73 -0.1
778,539 - MPMX19_04415 0.73 +0.1
778,539 - MPMX19_04415 0.73 +1.4
778,539 - MPMX19_04415 0.73 +0.1
778,539 - MPMX19_04415 0.73 +0.1
778,539 - MPMX19_04415 0.73 -0.3

Or see this region's nucleotide sequence