Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04260 and MPMX19_04261 are separated by 4 nucleotides MPMX19_04261 and MPMX19_04262 are separated by 48 nucleotides MPMX19_04262 and MPMX19_04263 are separated by 111 nucleotides
MPMX19_04260: MPMX19_04260 - Acetyl-coenzyme A synthetase, at 620,118 to 621,734
_04260
MPMX19_04261: MPMX19_04261 - putative membrane transporter protein YfcA, at 621,739 to 622,476
_04261
MPMX19_04262: MPMX19_04262 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 622,525 to 623,229
_04262
MPMX19_04263: MPMX19_04263 - hypothetical protein, at 623,341 to 624,348
_04263
Position (kb) 622
623
624 Strain fitness (log2 ratio) -2
-1
0
1
2 at 621.735 kb on + strand at 621.735 kb on + strand at 621.735 kb on + strand at 621.736 kb on - strand at 621.736 kb on - strand at 621.756 kb on - strand at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.835 kb on + strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.836 kb on - strand, within MPMX19_04261 at 621.895 kb on + strand, within MPMX19_04261 at 621.895 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.910 kb on + strand, within MPMX19_04261 at 621.911 kb on - strand, within MPMX19_04261 at 622.168 kb on + strand, within MPMX19_04261 at 622.168 kb on + strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.169 kb on - strand, within MPMX19_04261 at 622.177 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.306 kb on + strand, within MPMX19_04261 at 622.307 kb on - strand, within MPMX19_04261 at 622.307 kb on - strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.375 kb on + strand, within MPMX19_04261 at 622.376 kb on - strand, within MPMX19_04261 at 622.460 kb on + strand at 622.461 kb on - strand at 622.461 kb on - strand at 622.483 kb on + strand at 622.484 kb on - strand at 622.484 kb on - strand at 622.484 kb on - strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.485 kb on + strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.486 kb on - strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.552 kb on + strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.555 kb on + strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.556 kb on - strand at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.864 kb on + strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 622.865 kb on - strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.137 kb on + strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.138 kb on - strand, within MPMX19_04262 at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.215 kb on + strand at 623.216 kb on - strand at 623.216 kb on - strand at 623.216 kb on - strand at 623.216 kb on - strand at 623.254 kb on + strand at 623.254 kb on + strand at 623.254 kb on + strand at 623.255 kb on - strand at 623.263 kb on + strand at 623.264 kb on - strand at 623.271 kb on + strand at 623.271 kb on + strand at 623.272 kb on - strand at 623.281 kb on + strand at 623.283 kb on + strand at 623.283 kb on + strand at 623.284 kb on - strand at 623.295 kb on - strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.305 kb on + strand at 623.306 kb on - strand at 623.306 kb on - strand at 623.306 kb on - strand at 623.355 kb on + strand at 623.355 kb on + strand at 623.355 kb on + strand at 623.355 kb on + strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.356 kb on - strand at 623.678 kb on - strand, within MPMX19_04263 at 623.678 kb on - strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.920 kb on + strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 623.921 kb on - strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.028 kb on + strand, within MPMX19_04263 at 624.029 kb on - strand, within MPMX19_04263
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 621,735 + -0.4 621,735 + +0.2 621,735 + -1.2 621,736 - -0.4 621,736 - -0.4 621,756 - -0.2 621,835 + MPMX19_04261 0.13 +0.4 621,835 + MPMX19_04261 0.13 -0.6 621,835 + MPMX19_04261 0.13 +0.5 621,835 + MPMX19_04261 0.13 -0.3 621,835 + MPMX19_04261 0.13 -0.7 621,835 + MPMX19_04261 0.13 -0.4 621,835 + MPMX19_04261 0.13 +0.0 621,835 + MPMX19_04261 0.13 -0.9 621,835 + MPMX19_04261 0.13 -0.6 621,836 - MPMX19_04261 0.13 -1.7 621,836 - MPMX19_04261 0.13 -0.2 621,836 - MPMX19_04261 0.13 +0.5 621,836 - MPMX19_04261 0.13 +0.8 621,836 - MPMX19_04261 0.13 -0.4 621,836 - MPMX19_04261 0.13 +0.1 621,895 + MPMX19_04261 0.21 -1.1 621,895 + MPMX19_04261 0.21 -0.9 621,910 + MPMX19_04261 0.23 -1.1 621,910 + MPMX19_04261 0.23 +0.3 621,910 + MPMX19_04261 0.23 +0.1 621,910 + MPMX19_04261 0.23 -0.0 621,911 - MPMX19_04261 0.23 -0.3 622,168 + MPMX19_04261 0.58 -0.8 622,168 + MPMX19_04261 0.58 -0.9 622,169 - MPMX19_04261 0.58 -0.5 622,169 - MPMX19_04261 0.58 -1.0 622,169 - MPMX19_04261 0.58 -0.2 622,169 - MPMX19_04261 0.58 +0.1 622,169 - MPMX19_04261 0.58 +0.0 622,169 - MPMX19_04261 0.58 -0.8 622,169 - MPMX19_04261 0.58 -0.6 622,177 + MPMX19_04261 0.59 -0.2 622,306 + MPMX19_04261 0.77 -1.4 622,306 + MPMX19_04261 0.77 -0.5 622,306 + MPMX19_04261 0.77 -1.0 622,306 + MPMX19_04261 0.77 +0.7 622,306 + MPMX19_04261 0.77 -1.6 622,307 - MPMX19_04261 0.77 -0.6 622,307 - MPMX19_04261 0.77 -1.8 622,375 + MPMX19_04261 0.86 +0.2 622,375 + MPMX19_04261 0.86 +0.1 622,375 + MPMX19_04261 0.86 -0.6 622,375 + MPMX19_04261 0.86 +0.5 622,376 - MPMX19_04261 0.86 +1.9 622,460 + -0.1 622,461 - -0.3 622,461 - -1.2 622,483 + +0.2 622,484 - -0.4 622,484 - -0.2 622,484 - -0.3 622,485 + +0.1 622,485 + -1.0 622,485 + -0.4 622,485 + -0.3 622,485 + -1.8 622,486 - +0.6 622,486 - -1.4 622,486 - +0.6 622,486 - -0.0 622,486 - -0.4 622,486 - +0.8 622,486 - -1.3 622,486 - -0.7 622,486 - +0.4 622,552 + +0.1 622,552 + -0.2 622,552 + -0.2 622,552 + -0.8 622,552 + +0.6 622,552 + +0.3 622,552 + +1.6 622,552 + -0.5 622,552 + +1.2 622,552 + +1.6 622,552 + -1.9 622,552 + +0.4 622,552 + -0.2 622,552 + -0.8 622,552 + -0.9 622,552 + -0.0 622,552 + +1.0 622,552 + +0.8 622,552 + -0.8 622,552 + -0.3 622,552 + -0.2 622,553 - -1.2 622,553 - -0.1 622,553 - -1.3 622,553 - +0.3 622,553 - -0.0 622,553 - -0.4 622,553 - -1.2 622,553 - +0.6 622,553 - -0.5 622,553 - -0.7 622,553 - -1.0 622,553 - -0.4 622,553 - -2.0 622,553 - +0.2 622,553 - +1.2 622,555 + -1.4 622,555 + +0.7 622,555 + -0.5 622,555 + -0.7 622,555 + -1.8 622,555 + -2.6 622,555 + -0.1 622,555 + +0.6 622,555 + +0.1 622,555 + -0.5 622,555 + -0.4 622,555 + +0.4 622,555 + -0.2 622,555 + -0.9 622,555 + +0.1 622,555 + -0.5 622,555 + -0.1 622,556 - +0.1 622,556 - +0.6 622,556 - -0.4 622,556 - +0.6 622,556 - -0.6 622,556 - -1.2 622,556 - -0.4 622,556 - -0.8 622,556 - +0.3 622,556 - +1.2 622,556 - -0.3 622,556 - -0.0 622,864 + MPMX19_04262 0.48 -0.2 622,864 + MPMX19_04262 0.48 -0.2 622,864 + MPMX19_04262 0.48 +0.7 622,864 + MPMX19_04262 0.48 -0.0 622,864 + MPMX19_04262 0.48 -0.6 622,865 - MPMX19_04262 0.48 -0.5 622,865 - MPMX19_04262 0.48 +0.2 622,865 - MPMX19_04262 0.48 +1.0 622,865 - MPMX19_04262 0.48 +1.1 622,865 - MPMX19_04262 0.48 -0.2 622,865 - MPMX19_04262 0.48 -0.1 622,865 - MPMX19_04262 0.48 +1.2 623,137 + MPMX19_04262 0.87 +0.2 623,137 + MPMX19_04262 0.87 +0.3 623,137 + MPMX19_04262 0.87 +0.8 623,137 + MPMX19_04262 0.87 +0.4 623,137 + MPMX19_04262 0.87 -0.9 623,137 + MPMX19_04262 0.87 +0.2 623,137 + MPMX19_04262 0.87 -0.5 623,137 + MPMX19_04262 0.87 -0.4 623,137 + MPMX19_04262 0.87 +0.5 623,137 + MPMX19_04262 0.87 -0.1 623,137 + MPMX19_04262 0.87 +0.8 623,137 + MPMX19_04262 0.87 +1.1 623,137 + MPMX19_04262 0.87 -1.1 623,138 - MPMX19_04262 0.87 -0.2 623,138 - MPMX19_04262 0.87 +0.2 623,138 - MPMX19_04262 0.87 +1.4 623,138 - MPMX19_04262 0.87 -0.4 623,215 + -1.3 623,215 + +1.2 623,215 + -1.6 623,215 + -0.7 623,215 + +1.0 623,215 + -0.0 623,215 + +0.1 623,215 + -0.2 623,215 + -0.1 623,215 + -1.0 623,216 - +0.8 623,216 - -0.1 623,216 - +0.6 623,216 - -1.1 623,254 + -0.4 623,254 + +0.7 623,254 + -0.0 623,255 - -0.4 623,263 + +1.4 623,264 - -0.2 623,271 + +0.2 623,271 + +1.0 623,272 - -1.0 623,281 + +0.8 623,283 + -2.5 623,283 + +0.2 623,284 - +1.6 623,295 - +0.4 623,305 + -0.1 623,305 + +0.2 623,305 + -2.0 623,305 + +1.3 623,305 + -1.2 623,306 - -0.8 623,306 - -1.5 623,306 - +0.4 623,355 + -2.0 623,355 + -0.4 623,355 + -0.2 623,355 + +0.1 623,356 - -0.2 623,356 - -0.1 623,356 - -2.6 623,356 - -0.6 623,356 - -0.4 623,356 - -0.4 623,356 - +0.3 623,356 - +1.0 623,356 - -0.3 623,356 - -0.8 623,356 - -0.8 623,356 - -1.0 623,356 - -1.1 623,356 - +0.7 623,678 - MPMX19_04263 0.33 +0.1 623,678 - MPMX19_04263 0.33 +0.2 623,920 + MPMX19_04263 0.57 -0.0 623,920 + MPMX19_04263 0.57 +0.7 623,920 + MPMX19_04263 0.57 -0.6 623,920 + MPMX19_04263 0.57 +0.8 623,920 + MPMX19_04263 0.57 -1.4 623,921 - MPMX19_04263 0.58 +0.9 623,921 - MPMX19_04263 0.58 -0.0 623,921 - MPMX19_04263 0.58 +0.8 623,921 - MPMX19_04263 0.58 +0.4 623,921 - MPMX19_04263 0.58 -0.8 623,921 - MPMX19_04263 0.58 -1.4 623,921 - MPMX19_04263 0.58 -0.7 623,921 - MPMX19_04263 0.58 -0.6 623,921 - MPMX19_04263 0.58 +1.6 623,921 - MPMX19_04263 0.58 -2.0 623,921 - MPMX19_04263 0.58 -1.1 623,921 - MPMX19_04263 0.58 -0.6 623,921 - MPMX19_04263 0.58 -1.2 624,028 + MPMX19_04263 0.68 +0.9 624,028 + MPMX19_04263 0.68 -1.6 624,028 + MPMX19_04263 0.68 -0.6 624,028 + MPMX19_04263 0.68 -0.3 624,028 + MPMX19_04263 0.68 +0.4 624,029 - MPMX19_04263 0.68 -1.6
Or see this region's nucleotide sequence