Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04073

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04071 and MPMX19_04072 are separated by 324 nucleotidesMPMX19_04072 and MPMX19_04073 are separated by 209 nucleotidesMPMX19_04073 and MPMX19_04074 are separated by 294 nucleotides MPMX19_04071: MPMX19_04071 - Catabolite control protein A, at 376,297 to 377,316 _04071 MPMX19_04072: MPMX19_04072 - tRNA-Arg, at 377,641 to 377,717 _04072 MPMX19_04073: MPMX19_04073 - hypothetical protein, at 377,927 to 379,399 _04073 MPMX19_04074: MPMX19_04074 - Pyruvate kinase, at 379,694 to 381,193 _04074 Position (kb) 377 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 377.012 kb on + strand, within MPMX19_04071at 377.012 kb on + strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.789 kb on + strandat 377.789 kb on + strandat 377.928 kb on + strandat 377.928 kb on + strandat 377.929 kb on - strandat 377.929 kb on - strandat 378.111 kb on + strand, within MPMX19_04073at 378.111 kb on + strand, within MPMX19_04073at 378.111 kb on + strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.429 kb on + strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.430 kb on - strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.807 kb on + strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.808 kb on - strand, within MPMX19_04073at 378.952 kb on - strand, within MPMX19_04073at 378.993 kb on + strand, within MPMX19_04073at 378.993 kb on + strand, within MPMX19_04073at 378.993 kb on + strand, within MPMX19_04073at 378.993 kb on + strand, within MPMX19_04073at 378.993 kb on + strand, within MPMX19_04073at 378.993 kb on + strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 378.994 kb on - strand, within MPMX19_04073at 379.137 kb on + strand, within MPMX19_04073at 379.137 kb on + strand, within MPMX19_04073at 379.151 kb on - strand, within MPMX19_04073at 379.290 kb on + strandat 379.314 kb on + strandat 379.314 kb on + strandat 379.314 kb on + strandat 379.314 kb on + strandat 379.314 kb on + strandat 379.315 kb on - strandat 379.315 kb on - strandat 379.315 kb on - strandat 379.315 kb on - strandat 379.315 kb on - strandat 379.315 kb on - strandat 379.315 kb on - strandat 379.457 kb on + strandat 379.457 kb on + strandat 379.458 kb on - strandat 379.458 kb on - strandat 379.459 kb on + strandat 379.459 kb on + strandat 379.459 kb on + strandat 379.459 kb on + strandat 379.459 kb on + strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.460 kb on - strandat 379.548 kb on + strandat 379.561 kb on - strandat 379.561 kb on - strandat 379.588 kb on + strandat 379.588 kb on + strandat 379.588 kb on + strandat 379.588 kb on + strandat 379.588 kb on + strandat 379.588 kb on + strandat 379.588 kb on + strandat 379.589 kb on - strandat 379.589 kb on - strandat 379.589 kb on - strandat 379.589 kb on - strandat 379.589 kb on - strandat 379.630 kb on + strandat 379.630 kb on + strandat 379.631 kb on - strandat 379.650 kb on + strandat 379.652 kb on + strandat 379.653 kb on - strandat 379.684 kb on + strandat 379.684 kb on + strandat 379.684 kb on + strandat 379.684 kb on + strandat 379.684 kb on + strandat 379.684 kb on + strandat 379.684 kb on + strandat 379.685 kb on - strandat 379.685 kb on - strandat 379.685 kb on - strandat 379.781 kb on + strandat 379.781 kb on + strandat 379.782 kb on - strandat 379.786 kb on + strandat 379.787 kb on - strandat 379.787 kb on - strandat 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.866 kb on + strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.867 kb on - strand, within MPMX19_04074at 379.941 kb on + strand, within MPMX19_04074at 379.941 kb on + strand, within MPMX19_04074at 379.941 kb on + strand, within MPMX19_04074at 379.941 kb on + strand, within MPMX19_04074at 379.941 kb on + strand, within MPMX19_04074at 379.942 kb on - strand, within MPMX19_04074at 379.942 kb on - strand, within MPMX19_04074at 379.942 kb on - strand, within MPMX19_04074at 380.049 kb on + strand, within MPMX19_04074at 380.049 kb on + strand, within MPMX19_04074at 380.049 kb on + strand, within MPMX19_04074at 380.049 kb on + strand, within MPMX19_04074at 380.049 kb on + strand, within MPMX19_04074at 380.049 kb on + strand, within MPMX19_04074at 380.049 kb on + strand, within MPMX19_04074at 380.050 kb on - strand, within MPMX19_04074at 380.050 kb on - strand, within MPMX19_04074at 380.050 kb on - strand, within MPMX19_04074at 380.050 kb on - strand, within MPMX19_04074at 380.050 kb on - strand, within MPMX19_04074at 380.050 kb on - strand, within MPMX19_04074at 380.164 kb on - strand, within MPMX19_04074at 380.372 kb on - strand, within MPMX19_04074

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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377,012 + MPMX19_04071 0.70 -0.3
377,012 + MPMX19_04071 0.70 -0.3
377,013 - MPMX19_04071 0.70 -0.1
377,013 - MPMX19_04071 0.70 -0.2
377,013 - MPMX19_04071 0.70 -2.1
377,013 - MPMX19_04071 0.70 -3.2
377,039 + MPMX19_04071 0.73 -1.8
377,039 + MPMX19_04071 0.73 -1.1
377,039 + MPMX19_04071 0.73 -0.8
377,039 + MPMX19_04071 0.73 +0.3
377,040 - MPMX19_04071 0.73 +0.1
377,040 - MPMX19_04071 0.73 -0.4
377,040 - MPMX19_04071 0.73 +0.3
377,789 + +1.2
377,789 + -2.1
377,928 + +0.9
377,928 + +0.2
377,929 - -1.4
377,929 - +1.0
378,111 + MPMX19_04073 0.12 +1.3
378,111 + MPMX19_04073 0.12 +1.0
378,111 + MPMX19_04073 0.12 -0.7
378,112 - MPMX19_04073 0.13 +2.2
378,112 - MPMX19_04073 0.13 -0.2
378,112 - MPMX19_04073 0.13 -1.8
378,112 - MPMX19_04073 0.13 -2.3
378,429 + MPMX19_04073 0.34 +0.1
378,429 + MPMX19_04073 0.34 -1.0
378,429 + MPMX19_04073 0.34 -1.8
378,429 + MPMX19_04073 0.34 -0.4
378,429 + MPMX19_04073 0.34 +1.3
378,429 + MPMX19_04073 0.34 -0.0
378,429 + MPMX19_04073 0.34 -0.3
378,429 + MPMX19_04073 0.34 +1.6
378,429 + MPMX19_04073 0.34 +1.6
378,429 + MPMX19_04073 0.34 +0.6
378,429 + MPMX19_04073 0.34 -0.6
378,429 + MPMX19_04073 0.34 +1.8
378,429 + MPMX19_04073 0.34 -0.7
378,430 - MPMX19_04073 0.34 -0.5
378,430 - MPMX19_04073 0.34 +2.3
378,430 - MPMX19_04073 0.34 -0.1
378,430 - MPMX19_04073 0.34 -1.2
378,430 - MPMX19_04073 0.34 -0.4
378,430 - MPMX19_04073 0.34 +0.9
378,430 - MPMX19_04073 0.34 -0.2
378,430 - MPMX19_04073 0.34 +0.1
378,430 - MPMX19_04073 0.34 -0.8
378,430 - MPMX19_04073 0.34 +0.3
378,430 - MPMX19_04073 0.34 +0.9
378,430 - MPMX19_04073 0.34 -1.8
378,430 - MPMX19_04073 0.34 +0.8
378,430 - MPMX19_04073 0.34 -0.6
378,807 + MPMX19_04073 0.60 +0.2
378,807 + MPMX19_04073 0.60 -0.7
378,807 + MPMX19_04073 0.60 -1.4
378,807 + MPMX19_04073 0.60 +1.3
378,807 + MPMX19_04073 0.60 +0.6
378,807 + MPMX19_04073 0.60 +0.6
378,807 + MPMX19_04073 0.60 +0.6
378,807 + MPMX19_04073 0.60 -0.9
378,807 + MPMX19_04073 0.60 +0.3
378,807 + MPMX19_04073 0.60 -0.6
378,807 + MPMX19_04073 0.60 -0.4
378,807 + MPMX19_04073 0.60 -0.2
378,807 + MPMX19_04073 0.60 -1.1
378,807 + MPMX19_04073 0.60 -0.4
378,807 + MPMX19_04073 0.60 -2.3
378,808 - MPMX19_04073 0.60 -0.2
378,808 - MPMX19_04073 0.60 -0.4
378,808 - MPMX19_04073 0.60 +0.6
378,808 - MPMX19_04073 0.60 -0.1
378,808 - MPMX19_04073 0.60 -1.8
378,808 - MPMX19_04073 0.60 +0.4
378,808 - MPMX19_04073 0.60 -0.9
378,808 - MPMX19_04073 0.60 -0.8
378,808 - MPMX19_04073 0.60 -0.6
378,808 - MPMX19_04073 0.60 +0.6
378,808 - MPMX19_04073 0.60 -0.3
378,808 - MPMX19_04073 0.60 -0.1
378,808 - MPMX19_04073 0.60 -0.1
378,808 - MPMX19_04073 0.60 +0.2
378,808 - MPMX19_04073 0.60 -0.5
378,808 - MPMX19_04073 0.60 +0.1
378,808 - MPMX19_04073 0.60 -0.9
378,808 - MPMX19_04073 0.60 -0.8
378,808 - MPMX19_04073 0.60 +1.2
378,952 - MPMX19_04073 0.70 -0.0
378,993 + MPMX19_04073 0.72 -0.1
378,993 + MPMX19_04073 0.72 -0.7
378,993 + MPMX19_04073 0.72 +0.4
378,993 + MPMX19_04073 0.72 -0.8
378,993 + MPMX19_04073 0.72 -0.8
378,993 + MPMX19_04073 0.72 +1.6
378,994 - MPMX19_04073 0.72 +0.2
378,994 - MPMX19_04073 0.72 +0.1
378,994 - MPMX19_04073 0.72 -1.4
378,994 - MPMX19_04073 0.72 +0.2
378,994 - MPMX19_04073 0.72 +0.2
378,994 - MPMX19_04073 0.72 +0.2
378,994 - MPMX19_04073 0.72 -1.0
378,994 - MPMX19_04073 0.72 +0.7
379,137 + MPMX19_04073 0.82 -1.2
379,137 + MPMX19_04073 0.82 +0.4
379,151 - MPMX19_04073 0.83 -1.2
379,290 + -2.4
379,314 + -1.0
379,314 + +0.9
379,314 + +1.0
379,314 + +0.2
379,314 + -0.6
379,315 - -0.8
379,315 - +0.2
379,315 - -0.1
379,315 - -0.2
379,315 - +0.3
379,315 - +0.6
379,315 - +0.4
379,457 + -0.5
379,457 + +1.4
379,458 - -0.2
379,458 - -0.5
379,459 + -0.2
379,459 + +1.9
379,459 + -0.2
379,459 + +0.4
379,459 + -0.4
379,460 - -1.3
379,460 - -1.2
379,460 - -0.2
379,460 - +0.0
379,460 - -0.9
379,460 - -0.3
379,460 - +0.9
379,460 - -0.3
379,460 - -0.8
379,460 - -0.9
379,548 + -0.0
379,561 - -0.4
379,561 - -1.0
379,588 + -0.4
379,588 + -0.2
379,588 + -0.7
379,588 + -0.4
379,588 + -1.2
379,588 + +0.3
379,588 + -0.5
379,589 - +0.5
379,589 - -2.2
379,589 - -2.0
379,589 - +0.2
379,589 - +1.2
379,630 + -1.9
379,630 + -0.1
379,631 - -1.3
379,650 + +0.6
379,652 + +0.5
379,653 - -0.2
379,684 + -0.2
379,684 + +0.8
379,684 + +1.8
379,684 + -1.8
379,684 + -0.3
379,684 + -0.1
379,684 + +0.2
379,685 - -0.9
379,685 - -1.8
379,685 - -0.0
379,781 + -0.2
379,781 + -0.8
379,782 - -1.3
379,786 + +0.1
379,787 - +2.4
379,787 - -0.4
379,866 + MPMX19_04074 0.11 -0.7
379,866 + MPMX19_04074 0.11 -1.0
379,866 + MPMX19_04074 0.11 -0.3
379,866 + MPMX19_04074 0.11 -1.6
379,866 + MPMX19_04074 0.11 -1.2
379,866 + MPMX19_04074 0.11 +0.1
379,866 + MPMX19_04074 0.11 +0.8
379,866 + MPMX19_04074 0.11 -0.2
379,866 + MPMX19_04074 0.11 -1.1
379,866 + MPMX19_04074 0.11 +0.7
379,866 + MPMX19_04074 0.11 -2.7
379,866 + MPMX19_04074 0.11 +1.0
379,866 + MPMX19_04074 0.11 -1.2
379,866 + MPMX19_04074 0.11 +0.8
379,866 + MPMX19_04074 0.11 +0.1
379,866 + MPMX19_04074 0.11 -0.6
379,867 - MPMX19_04074 0.12 +0.6
379,867 - MPMX19_04074 0.12 +0.5
379,867 - MPMX19_04074 0.12 -0.5
379,867 - MPMX19_04074 0.12 -1.2
379,867 - MPMX19_04074 0.12 -0.1
379,867 - MPMX19_04074 0.12 -0.6
379,867 - MPMX19_04074 0.12 -0.5
379,867 - MPMX19_04074 0.12 -0.5
379,867 - MPMX19_04074 0.12 -1.4
379,867 - MPMX19_04074 0.12 -0.3
379,867 - MPMX19_04074 0.12 -0.3
379,867 - MPMX19_04074 0.12 -1.8
379,867 - MPMX19_04074 0.12 +0.6
379,867 - MPMX19_04074 0.12 -1.1
379,867 - MPMX19_04074 0.12 -0.6
379,867 - MPMX19_04074 0.12 -2.2
379,941 + MPMX19_04074 0.16 +0.6
379,941 + MPMX19_04074 0.16 +0.1
379,941 + MPMX19_04074 0.16 -0.0
379,941 + MPMX19_04074 0.16 -1.6
379,941 + MPMX19_04074 0.16 -2.1
379,942 - MPMX19_04074 0.17 -0.0
379,942 - MPMX19_04074 0.17 -0.5
379,942 - MPMX19_04074 0.17 +0.1
380,049 + MPMX19_04074 0.24 +0.6
380,049 + MPMX19_04074 0.24 -0.4
380,049 + MPMX19_04074 0.24 -1.4
380,049 + MPMX19_04074 0.24 +0.2
380,049 + MPMX19_04074 0.24 -1.5
380,049 + MPMX19_04074 0.24 -0.8
380,049 + MPMX19_04074 0.24 -0.3
380,050 - MPMX19_04074 0.24 +0.3
380,050 - MPMX19_04074 0.24 +0.8
380,050 - MPMX19_04074 0.24 -1.2
380,050 - MPMX19_04074 0.24 -0.9
380,050 - MPMX19_04074 0.24 -0.4
380,050 - MPMX19_04074 0.24 +0.6
380,164 - MPMX19_04074 0.31 +0.2
380,372 - MPMX19_04074 0.45 -0.1

Or see this region's nucleotide sequence