Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03948 and MPMX19_03949 are separated by 258 nucleotides MPMX19_03949 and MPMX19_03950 are separated by 77 nucleotides
MPMX19_03948: MPMX19_03948 - tRNA-Ser, at 235,838 to 235,929
_03948
MPMX19_03949: MPMX19_03949 - hypothetical protein, at 236,188 to 236,757
_03949
MPMX19_03950: MPMX19_03950 - Acetyl-coenzyme A synthetase, at 236,835 to 238,643
_03950
Position (kb) 236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.911 kb on - strand, within MPMX19_03948 at 235.911 kb on - strand, within MPMX19_03948 at 235.935 kb on - strand at 236.061 kb on - strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.303 kb on + strand, within MPMX19_03949 at 236.303 kb on + strand, within MPMX19_03949 at 236.303 kb on + strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.313 kb on - strand, within MPMX19_03949 at 236.313 kb on - strand, within MPMX19_03949 at 236.486 kb on + strand, within MPMX19_03949 at 236.487 kb on - strand, within MPMX19_03949 at 236.487 kb on - strand, within MPMX19_03949 at 236.627 kb on + strand, within MPMX19_03949 at 236.627 kb on + strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.836 kb on + strand at 236.837 kb on - strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.932 kb on + strand at 236.932 kb on + strand at 236.932 kb on + strand at 236.932 kb on + strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.983 kb on + strand at 236.983 kb on + strand at 236.984 kb on - strand at 237.187 kb on + strand, within MPMX19_03950 at 237.187 kb on + strand, within MPMX19_03950 at 237.188 kb on - strand, within MPMX19_03950 at 237.188 kb on - strand, within MPMX19_03950 at 237.227 kb on - strand, within MPMX19_03950 at 237.227 kb on - strand, within MPMX19_03950 at 237.227 kb on - strand, within MPMX19_03950 at 237.436 kb on + strand, within MPMX19_03950 at 237.436 kb on + strand, within MPMX19_03950 at 237.437 kb on - strand, within MPMX19_03950 at 237.493 kb on + strand, within MPMX19_03950 at 237.494 kb on - strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.497 kb on - strand, within MPMX19_03950 at 237.497 kb on - strand, within MPMX19_03950 at 237.497 kb on - strand, within MPMX19_03950 at 237.505 kb on + strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 235,634 + -2.2 235,634 + +0.1 235,634 + -0.8 235,634 + +0.6 235,634 + -0.2 235,634 + -0.9 235,634 + -0.4 235,635 - +0.9 235,635 - +0.4 235,635 - +0.9 235,635 - +1.0 235,635 - +0.1 235,635 - -1.8 235,911 - MPMX19_03948 0.79 -0.7 235,911 - MPMX19_03948 0.79 -1.0 235,935 - -1.1 236,061 - +0.9 236,159 + -0.9 236,159 + +0.4 236,159 + +0.7 236,159 + -1.4 236,159 + -0.4 236,159 + +0.2 236,159 + +0.2 236,159 + -0.8 236,159 + +1.0 236,159 + +0.6 236,159 + -0.3 236,159 + +0.9 236,159 + -1.4 236,159 + +0.3 236,159 + +0.1 236,159 + -0.6 236,159 + -2.4 236,159 + -1.3 236,160 - +0.1 236,160 - -0.0 236,160 - +0.3 236,160 - -0.0 236,160 - +0.3 236,160 - +0.8 236,160 - +0.2 236,160 - -0.5 236,160 - +1.0 236,160 - -1.2 236,160 - -1.2 236,160 - -1.1 236,160 - -1.4 236,160 - +0.3 236,160 - -1.4 236,160 - -0.1 236,160 - +1.0 236,160 - +0.2 236,160 - +0.3 236,160 - -0.0 236,160 - +0.9 236,160 - -1.8 236,303 + MPMX19_03949 0.20 -2.0 236,303 + MPMX19_03949 0.20 -0.4 236,303 + MPMX19_03949 0.20 -0.4 236,304 - MPMX19_03949 0.20 -0.6 236,304 - MPMX19_03949 0.20 -0.2 236,304 - MPMX19_03949 0.20 +0.1 236,304 - MPMX19_03949 0.20 -0.1 236,304 - MPMX19_03949 0.20 -0.4 236,312 + MPMX19_03949 0.22 -1.0 236,312 + MPMX19_03949 0.22 -0.4 236,312 + MPMX19_03949 0.22 +0.5 236,313 - MPMX19_03949 0.22 -0.4 236,313 - MPMX19_03949 0.22 -0.4 236,486 + MPMX19_03949 0.52 -0.5 236,487 - MPMX19_03949 0.52 -1.2 236,487 - MPMX19_03949 0.52 -0.6 236,627 + MPMX19_03949 0.77 -0.8 236,627 + MPMX19_03949 0.77 -1.1 236,628 - MPMX19_03949 0.77 +0.2 236,628 - MPMX19_03949 0.77 -0.7 236,628 - MPMX19_03949 0.77 -0.6 236,628 - MPMX19_03949 0.77 -0.6 236,628 - MPMX19_03949 0.77 -0.2 236,628 - MPMX19_03949 0.77 +0.7 236,810 + -0.2 236,810 + +0.1 236,810 + -1.3 236,810 + +0.7 236,810 + -1.2 236,810 + -1.6 236,811 - -0.4 236,811 - +0.3 236,811 - +0.0 236,811 - +0.6 236,811 - -0.4 236,811 - +0.4 236,811 - -0.7 236,811 - -1.2 236,811 - +1.2 236,811 - -0.2 236,836 + -0.4 236,837 - -1.2 236,929 + +0.0 236,929 + -0.2 236,929 + -1.8 236,929 + -1.8 236,929 + +0.7 236,929 + +1.0 236,929 + -1.9 236,929 + -1.4 236,929 + -1.1 236,929 + +0.2 236,929 + -1.1 236,929 + -0.6 236,929 + -0.5 236,930 - +0.4 236,930 - -0.2 236,930 - -0.9 236,930 - +0.2 236,930 - +0.5 236,930 - -0.7 236,930 - +0.3 236,930 - -0.5 236,932 + -1.5 236,932 + +0.4 236,932 + -2.8 236,932 + +0.9 236,933 - -1.0 236,933 - +1.0 236,933 - -0.3 236,933 - +0.1 236,933 - +1.3 236,983 + +0.0 236,983 + +0.1 236,984 - -0.8 237,187 + MPMX19_03950 0.19 -0.2 237,187 + MPMX19_03950 0.19 -0.9 237,188 - MPMX19_03950 0.20 -0.9 237,188 - MPMX19_03950 0.20 +0.0 237,227 - MPMX19_03950 0.22 -0.4 237,227 - MPMX19_03950 0.22 -0.0 237,227 - MPMX19_03950 0.22 -1.0 237,436 + MPMX19_03950 0.33 -0.2 237,436 + MPMX19_03950 0.33 +1.4 237,437 - MPMX19_03950 0.33 -0.5 237,493 + MPMX19_03950 0.36 -0.6 237,494 - MPMX19_03950 0.36 -0.1 237,496 + MPMX19_03950 0.37 -1.8 237,496 + MPMX19_03950 0.37 -0.0 237,496 + MPMX19_03950 0.37 -0.8 237,496 + MPMX19_03950 0.37 -0.8 237,496 + MPMX19_03950 0.37 +0.8 237,497 - MPMX19_03950 0.37 -0.7 237,497 - MPMX19_03950 0.37 +0.2 237,497 - MPMX19_03950 0.37 -0.1 237,505 + MPMX19_03950 0.37 -1.0 237,506 - MPMX19_03950 0.37 -1.8 237,506 - MPMX19_03950 0.37 -0.4 237,506 - MPMX19_03950 0.37 -1.2 237,506 - MPMX19_03950 0.37 +0.3 237,535 + MPMX19_03950 0.39 -0.9 237,535 + MPMX19_03950 0.39 -2.3 237,535 + MPMX19_03950 0.39 +0.2 237,535 + MPMX19_03950 0.39 -0.2 237,535 + MPMX19_03950 0.39 +0.6 237,535 + MPMX19_03950 0.39 -1.4 237,535 + MPMX19_03950 0.39 -0.9 237,536 - MPMX19_03950 0.39 -0.1 237,536 - MPMX19_03950 0.39 +0.4 237,536 - MPMX19_03950 0.39 +0.6 237,536 - MPMX19_03950 0.39 -0.2 237,536 - MPMX19_03950 0.39 +0.3 237,536 - MPMX19_03950 0.39 +0.6 237,536 - MPMX19_03950 0.39 -0.4 237,536 - MPMX19_03950 0.39 -0.0 237,536 - MPMX19_03950 0.39 -0.3 237,574 + MPMX19_03950 0.41 -0.3 237,574 + MPMX19_03950 0.41 -0.8 237,574 + MPMX19_03950 0.41 +0.4 237,574 + MPMX19_03950 0.41 -0.8 237,574 + MPMX19_03950 0.41 +0.4 237,574 + MPMX19_03950 0.41 +0.0 237,574 + MPMX19_03950 0.41 +0.8 237,574 + MPMX19_03950 0.41 -0.6 237,574 + MPMX19_03950 0.41 -0.7 237,574 + MPMX19_03950 0.41 -1.0 237,574 + MPMX19_03950 0.41 -1.9 237,574 + MPMX19_03950 0.41 -1.7 237,574 + MPMX19_03950 0.41 -0.3 237,574 + MPMX19_03950 0.41 -0.4 237,574 + MPMX19_03950 0.41 -0.2 237,574 + MPMX19_03950 0.41 -0.9 237,574 + MPMX19_03950 0.41 -0.2 237,575 - MPMX19_03950 0.41 +0.5 237,575 - MPMX19_03950 0.41 +0.2 237,575 - MPMX19_03950 0.41 -0.4 237,575 - MPMX19_03950 0.41 -1.0 237,575 - MPMX19_03950 0.41 -0.6 237,575 - MPMX19_03950 0.41 -0.9 237,646 + MPMX19_03950 0.45 -0.2 237,646 + MPMX19_03950 0.45 -0.2 237,646 + MPMX19_03950 0.45 -1.3 237,646 + MPMX19_03950 0.45 +0.4 237,646 + MPMX19_03950 0.45 -0.9 237,646 + MPMX19_03950 0.45 -1.0 237,646 + MPMX19_03950 0.45 -1.5 237,646 + MPMX19_03950 0.45 +0.2 237,646 + MPMX19_03950 0.45 -0.5 237,647 - MPMX19_03950 0.45 -0.9 237,647 - MPMX19_03950 0.45 -0.6 237,647 - MPMX19_03950 0.45 +0.2 237,647 - MPMX19_03950 0.45 -1.9 237,647 - MPMX19_03950 0.45 -1.2 237,647 - MPMX19_03950 0.45 -0.1 237,647 - MPMX19_03950 0.45 -0.3 237,647 - MPMX19_03950 0.45 -2.3 237,647 - MPMX19_03950 0.45 -1.6 237,647 - MPMX19_03950 0.45 -1.4
Or see this region's nucleotide sequence