Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03817 and MPMX19_03818 are separated by 18 nucleotides MPMX19_03818 and MPMX19_03819 are separated by 224 nucleotides MPMX19_03819 and MPMX19_03820 overlap by 4 nucleotides
MPMX19_03817: MPMX19_03817 - 6-deoxy-6-sulfogluconolactonase, at 53,893 to 54,786
_03817
MPMX19_03818: MPMX19_03818 - Hydrogen peroxide-inducible genes activator, at 54,805 to 55,755
_03818
MPMX19_03819: MPMX19_03819 - NADP-reducing hydrogenase subunit HndA, at 55,980 to 56,492
_03819
MPMX19_03820: MPMX19_03820 - hypothetical protein, at 56,489 to 58,069
_03820
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.373 kb on + strand, within MPMX19_03817 at 54.416 kb on - strand, within MPMX19_03817 at 54.526 kb on + strand, within MPMX19_03817 at 54.527 kb on - strand, within MPMX19_03817 at 54.541 kb on + strand, within MPMX19_03817 at 54.659 kb on - strand, within MPMX19_03817 at 54.823 kb on + strand at 54.824 kb on - strand at 54.824 kb on - strand at 54.824 kb on - strand at 54.824 kb on - strand at 54.824 kb on - strand at 55.000 kb on + strand, within MPMX19_03818 at 55.000 kb on + strand, within MPMX19_03818 at 55.000 kb on + strand, within MPMX19_03818 at 55.001 kb on - strand, within MPMX19_03818 at 55.001 kb on - strand, within MPMX19_03818 at 55.001 kb on - strand, within MPMX19_03818 at 55.001 kb on - strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.237 kb on + strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.238 kb on - strand, within MPMX19_03818 at 55.282 kb on + strand, within MPMX19_03818 at 55.282 kb on + strand, within MPMX19_03818 at 55.282 kb on + strand, within MPMX19_03818 at 55.282 kb on + strand, within MPMX19_03818 at 55.282 kb on + strand, within MPMX19_03818 at 55.283 kb on - strand, within MPMX19_03818 at 55.283 kb on - strand, within MPMX19_03818 at 55.283 kb on - strand, within MPMX19_03818 at 55.283 kb on - strand, within MPMX19_03818 at 55.283 kb on - strand, within MPMX19_03818 at 55.283 kb on - strand, within MPMX19_03818 at 55.283 kb on - strand, within MPMX19_03818 at 55.295 kb on - strand, within MPMX19_03818 at 55.295 kb on - strand, within MPMX19_03818 at 55.295 kb on - strand, within MPMX19_03818 at 55.492 kb on + strand, within MPMX19_03818 at 55.492 kb on + strand, within MPMX19_03818 at 55.492 kb on + strand, within MPMX19_03818 at 55.492 kb on + strand, within MPMX19_03818 at 55.493 kb on - strand, within MPMX19_03818 at 55.493 kb on - strand, within MPMX19_03818 at 55.493 kb on - strand, within MPMX19_03818 at 55.493 kb on - strand, within MPMX19_03818 at 55.493 kb on - strand, within MPMX19_03818 at 55.624 kb on + strand, within MPMX19_03818 at 55.624 kb on + strand, within MPMX19_03818 at 55.624 kb on + strand, within MPMX19_03818 at 55.625 kb on - strand, within MPMX19_03818 at 55.625 kb on - strand, within MPMX19_03818 at 55.625 kb on - strand, within MPMX19_03818 at 55.625 kb on - strand, within MPMX19_03818 at 56.058 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.139 kb on + strand, within MPMX19_03819 at 56.140 kb on - strand, within MPMX19_03819 at 56.140 kb on - strand, within MPMX19_03819 at 56.140 kb on - strand, within MPMX19_03819 at 56.140 kb on - strand, within MPMX19_03819 at 56.140 kb on - strand, within MPMX19_03819 at 56.639 kb on + strand at 56.639 kb on + strand at 56.639 kb on + strand at 56.639 kb on + strand at 56.639 kb on + strand at 56.639 kb on + strand at 56.639 kb on + strand at 56.639 kb on + strand at 56.639 kb on + strand at 56.640 kb on - strand at 56.640 kb on - strand at 56.640 kb on - strand at 56.640 kb on - strand at 56.640 kb on - strand at 56.640 kb on - strand at 56.687 kb on + strand, within MPMX19_03820 at 56.687 kb on + strand, within MPMX19_03820
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 54,373 + MPMX19_03817 0.54 -0.0 54,416 - MPMX19_03817 0.59 +0.6 54,526 + MPMX19_03817 0.71 -0.2 54,527 - MPMX19_03817 0.71 -1.6 54,541 + MPMX19_03817 0.72 +1.0 54,659 - MPMX19_03817 0.86 -0.4 54,823 + -0.7 54,824 - +0.4 54,824 - -0.9 54,824 - -0.4 54,824 - -1.7 54,824 - -0.8 55,000 + MPMX19_03818 0.21 -1.3 55,000 + MPMX19_03818 0.21 -0.0 55,000 + MPMX19_03818 0.21 +0.3 55,001 - MPMX19_03818 0.21 -0.0 55,001 - MPMX19_03818 0.21 -2.1 55,001 - MPMX19_03818 0.21 -0.0 55,001 - MPMX19_03818 0.21 -0.8 55,237 + MPMX19_03818 0.45 -0.9 55,237 + MPMX19_03818 0.45 +0.3 55,237 + MPMX19_03818 0.45 +0.3 55,237 + MPMX19_03818 0.45 -0.1 55,237 + MPMX19_03818 0.45 -1.0 55,237 + MPMX19_03818 0.45 +0.4 55,237 + MPMX19_03818 0.45 +0.3 55,237 + MPMX19_03818 0.45 +0.2 55,237 + MPMX19_03818 0.45 -0.9 55,237 + MPMX19_03818 0.45 -0.9 55,237 + MPMX19_03818 0.45 -1.2 55,237 + MPMX19_03818 0.45 -1.0 55,238 - MPMX19_03818 0.46 -0.5 55,238 - MPMX19_03818 0.46 +0.8 55,238 - MPMX19_03818 0.46 -0.8 55,238 - MPMX19_03818 0.46 +0.2 55,238 - MPMX19_03818 0.46 -0.3 55,238 - MPMX19_03818 0.46 -0.4 55,238 - MPMX19_03818 0.46 +0.4 55,238 - MPMX19_03818 0.46 -0.6 55,238 - MPMX19_03818 0.46 -0.0 55,282 + MPMX19_03818 0.50 +1.2 55,282 + MPMX19_03818 0.50 -0.6 55,282 + MPMX19_03818 0.50 -1.0 55,282 + MPMX19_03818 0.50 -1.0 55,282 + MPMX19_03818 0.50 -0.9 55,283 - MPMX19_03818 0.50 +0.7 55,283 - MPMX19_03818 0.50 -0.3 55,283 - MPMX19_03818 0.50 +1.1 55,283 - MPMX19_03818 0.50 -0.3 55,283 - MPMX19_03818 0.50 -0.4 55,283 - MPMX19_03818 0.50 -1.0 55,283 - MPMX19_03818 0.50 -0.9 55,295 - MPMX19_03818 0.52 +0.3 55,295 - MPMX19_03818 0.52 +0.8 55,295 - MPMX19_03818 0.52 -2.7 55,492 + MPMX19_03818 0.72 +0.4 55,492 + MPMX19_03818 0.72 +0.2 55,492 + MPMX19_03818 0.72 +1.8 55,492 + MPMX19_03818 0.72 -0.9 55,493 - MPMX19_03818 0.72 -1.3 55,493 - MPMX19_03818 0.72 -0.9 55,493 - MPMX19_03818 0.72 -0.3 55,493 - MPMX19_03818 0.72 +0.8 55,493 - MPMX19_03818 0.72 -1.0 55,624 + MPMX19_03818 0.86 -0.3 55,624 + MPMX19_03818 0.86 -2.1 55,624 + MPMX19_03818 0.86 +0.1 55,625 - MPMX19_03818 0.86 -1.3 55,625 - MPMX19_03818 0.86 -0.8 55,625 - MPMX19_03818 0.86 -0.7 55,625 - MPMX19_03818 0.86 -1.6 56,058 + MPMX19_03819 0.15 +0.6 56,139 + MPMX19_03819 0.31 -0.0 56,139 + MPMX19_03819 0.31 +1.3 56,139 + MPMX19_03819 0.31 -0.5 56,139 + MPMX19_03819 0.31 +0.9 56,139 + MPMX19_03819 0.31 -0.3 56,139 + MPMX19_03819 0.31 -1.7 56,139 + MPMX19_03819 0.31 -0.6 56,139 + MPMX19_03819 0.31 -0.4 56,139 + MPMX19_03819 0.31 -1.4 56,140 - MPMX19_03819 0.31 +0.6 56,140 - MPMX19_03819 0.31 +1.9 56,140 - MPMX19_03819 0.31 -0.0 56,140 - MPMX19_03819 0.31 -1.4 56,140 - MPMX19_03819 0.31 +0.6 56,639 + -1.3 56,639 + +0.2 56,639 + +0.4 56,639 + -0.8 56,639 + -1.6 56,639 + -0.8 56,639 + +0.3 56,639 + -1.3 56,639 + +0.8 56,640 - +0.8 56,640 - +0.5 56,640 - -0.3 56,640 - -0.0 56,640 - -0.2 56,640 - -2.0 56,687 + MPMX19_03820 0.13 -0.7 56,687 + MPMX19_03820 0.13 +0.0
Or see this region's nucleotide sequence