Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03515 and MPMX19_03516 overlap by 4 nucleotides MPMX19_03516 and MPMX19_03517 are separated by 547 nucleotides
MPMX19_03515: MPMX19_03515 - Hydrogenase-4 component B, at 932,074 to 934,101
_03515
MPMX19_03516: MPMX19_03516 - Hydrogenase-4 component A, at 934,098 to 934,691
_03516
MPMX19_03517: MPMX19_03517 - Hydrogenase-4 component A, at 935,239 to 935,781
_03517
Position (kb) 934
935 Strain fitness (log2 ratio) -2
-1
0
1 at 933.163 kb on - strand, within MPMX19_03515 at 933.218 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.603 kb on - strand, within MPMX19_03515 at 933.656 kb on + strand, within MPMX19_03515 at 933.656 kb on + strand, within MPMX19_03515 at 933.656 kb on + strand, within MPMX19_03515 at 933.785 kb on + strand, within MPMX19_03515 at 933.785 kb on + strand, within MPMX19_03515 at 933.797 kb on + strand, within MPMX19_03515 at 933.797 kb on + strand, within MPMX19_03515 at 933.797 kb on + strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.809 kb on + strand, within MPMX19_03515 at 933.809 kb on + strand, within MPMX19_03515 at 933.809 kb on + strand, within MPMX19_03515 at 933.810 kb on - strand, within MPMX19_03515 at 933.810 kb on - strand, within MPMX19_03515 at 934.691 kb on + strand at 934.919 kb on - strand at 935.051 kb on + strand at 935.467 kb on + strand, within MPMX19_03517 at 935.468 kb on - strand, within MPMX19_03517
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 933,163 - MPMX19_03515 0.54 +1.1 933,218 + MPMX19_03515 0.56 -1.4 933,602 + MPMX19_03515 0.75 +0.2 933,602 + MPMX19_03515 0.75 -0.3 933,602 + MPMX19_03515 0.75 +0.1 933,602 + MPMX19_03515 0.75 -0.2 933,603 - MPMX19_03515 0.75 -0.4 933,656 + MPMX19_03515 0.78 -0.2 933,656 + MPMX19_03515 0.78 +1.4 933,656 + MPMX19_03515 0.78 -0.2 933,785 + MPMX19_03515 0.84 -1.2 933,785 + MPMX19_03515 0.84 -0.5 933,797 + MPMX19_03515 0.85 +0.3 933,797 + MPMX19_03515 0.85 +0.1 933,797 + MPMX19_03515 0.85 -0.8 933,798 - MPMX19_03515 0.85 -2.2 933,798 - MPMX19_03515 0.85 -0.0 933,798 - MPMX19_03515 0.85 -0.3 933,798 - MPMX19_03515 0.85 -1.5 933,798 - MPMX19_03515 0.85 -1.1 933,798 - MPMX19_03515 0.85 -0.2 933,798 - MPMX19_03515 0.85 -1.7 933,809 + MPMX19_03515 0.86 -0.2 933,809 + MPMX19_03515 0.86 +0.8 933,809 + MPMX19_03515 0.86 -0.6 933,810 - MPMX19_03515 0.86 +0.6 933,810 - MPMX19_03515 0.86 -0.2 934,691 + -0.7 934,919 - +0.5 935,051 + -0.4 935,467 + MPMX19_03517 0.42 -0.4 935,468 - MPMX19_03517 0.42 -0.4
Or see this region's nucleotide sequence