Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03492 and MPMX19_03493 are separated by 285 nucleotides MPMX19_03493 and MPMX19_03494 are separated by 333 nucleotides
MPMX19_03492: MPMX19_03492 - 3'-5' exonuclease DinG, at 906,194 to 907,132
_03492
MPMX19_03493: MPMX19_03493 - hypothetical protein, at 907,418 to 909,121
_03493
MPMX19_03494: MPMX19_03494 - Regulatory protein AtoC, at 909,455 to 910,861
_03494
Position (kb)
907
908
909
910 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 906.879 kb on - strand, within MPMX19_03492 at 906.879 kb on - strand, within MPMX19_03492 at 906.879 kb on - strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.989 kb on + strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 906.990 kb on - strand, within MPMX19_03492 at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.185 kb on + strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand at 907.368 kb on + strand at 907.368 kb on + strand at 907.369 kb on - strand at 907.369 kb on - strand at 908.320 kb on + strand, within MPMX19_03493 at 908.320 kb on + strand, within MPMX19_03493 at 908.320 kb on + strand, within MPMX19_03493 at 908.321 kb on - strand, within MPMX19_03493 at 908.321 kb on - strand, within MPMX19_03493 at 908.321 kb on - strand, within MPMX19_03493 at 908.321 kb on - strand, within MPMX19_03493 at 908.532 kb on + strand, within MPMX19_03493 at 908.533 kb on - strand, within MPMX19_03493 at 908.533 kb on - strand, within MPMX19_03493 at 908.533 kb on - strand, within MPMX19_03493 at 908.533 kb on - strand, within MPMX19_03493 at 908.533 kb on - strand, within MPMX19_03493 at 908.533 kb on - strand, within MPMX19_03493 at 908.694 kb on + strand, within MPMX19_03493 at 908.694 kb on + strand, within MPMX19_03493 at 908.694 kb on + strand, within MPMX19_03493 at 908.694 kb on + strand, within MPMX19_03493 at 908.695 kb on - strand, within MPMX19_03493 at 908.695 kb on - strand, within MPMX19_03493 at 908.736 kb on + strand, within MPMX19_03493 at 908.737 kb on - strand, within MPMX19_03493 at 908.793 kb on + strand, within MPMX19_03493 at 908.794 kb on - strand, within MPMX19_03493 at 908.847 kb on + strand, within MPMX19_03493 at 908.847 kb on + strand, within MPMX19_03493 at 908.847 kb on + strand, within MPMX19_03493 at 908.847 kb on + strand, within MPMX19_03493 at 908.847 kb on + strand, within MPMX19_03493 at 908.848 kb on - strand, within MPMX19_03493 at 908.848 kb on - strand, within MPMX19_03493 at 908.848 kb on - strand, within MPMX19_03493 at 908.848 kb on - strand, within MPMX19_03493 at 908.848 kb on - strand, within MPMX19_03493 at 909.126 kb on + strand at 909.126 kb on + strand at 909.126 kb on + strand at 909.127 kb on - strand at 909.127 kb on - strand at 909.127 kb on - strand at 909.131 kb on - strand at 909.225 kb on + strand at 909.227 kb on + strand at 909.227 kb on + strand at 909.362 kb on - strand at 909.362 kb on - strand at 909.380 kb on - strand at 909.380 kb on - strand at 909.423 kb on + strand at 909.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 906,879 - MPMX19_03492 0.73 -0.3 906,879 - MPMX19_03492 0.73 -0.2 906,879 - MPMX19_03492 0.73 -0.4 906,989 + MPMX19_03492 0.85 -0.4 906,989 + MPMX19_03492 0.85 -0.0 906,989 + MPMX19_03492 0.85 -1.2 906,989 + MPMX19_03492 0.85 +0.7 906,989 + MPMX19_03492 0.85 -1.0 906,989 + MPMX19_03492 0.85 -0.2 906,989 + MPMX19_03492 0.85 -2.7 906,990 - MPMX19_03492 0.85 +0.3 906,990 - MPMX19_03492 0.85 -0.6 906,990 - MPMX19_03492 0.85 -1.6 906,990 - MPMX19_03492 0.85 -0.0 907,055 + +0.2 907,055 + -1.0 907,055 + +0.3 907,056 - -0.7 907,056 - -1.3 907,185 + -0.3 907,185 + +0.7 907,185 + +0.0 907,185 + -0.0 907,185 + -0.0 907,185 + -0.8 907,185 + -0.3 907,185 + -0.2 907,185 + +0.1 907,186 - +0.6 907,186 - -0.0 907,186 - -1.3 907,186 - +0.2 907,186 - +1.0 907,186 - -1.4 907,186 - -0.7 907,186 - +0.6 907,368 + -0.3 907,368 + -0.2 907,369 - +0.2 907,369 - -1.4 908,320 + MPMX19_03493 0.53 +1.8 908,320 + MPMX19_03493 0.53 -0.2 908,320 + MPMX19_03493 0.53 -0.4 908,321 - MPMX19_03493 0.53 -2.0 908,321 - MPMX19_03493 0.53 +0.4 908,321 - MPMX19_03493 0.53 +0.8 908,321 - MPMX19_03493 0.53 -0.9 908,532 + MPMX19_03493 0.65 -0.3 908,533 - MPMX19_03493 0.65 +0.3 908,533 - MPMX19_03493 0.65 +0.7 908,533 - MPMX19_03493 0.65 +0.4 908,533 - MPMX19_03493 0.65 +1.1 908,533 - MPMX19_03493 0.65 -0.1 908,533 - MPMX19_03493 0.65 +0.3 908,694 + MPMX19_03493 0.75 +0.6 908,694 + MPMX19_03493 0.75 +0.3 908,694 + MPMX19_03493 0.75 -0.0 908,694 + MPMX19_03493 0.75 +0.4 908,695 - MPMX19_03493 0.75 -0.4 908,695 - MPMX19_03493 0.75 +0.3 908,736 + MPMX19_03493 0.77 -0.6 908,737 - MPMX19_03493 0.77 -1.0 908,793 + MPMX19_03493 0.81 +0.8 908,794 - MPMX19_03493 0.81 +2.0 908,847 + MPMX19_03493 0.84 +0.6 908,847 + MPMX19_03493 0.84 +0.2 908,847 + MPMX19_03493 0.84 +0.5 908,847 + MPMX19_03493 0.84 +0.4 908,847 + MPMX19_03493 0.84 +0.1 908,848 - MPMX19_03493 0.84 -0.6 908,848 - MPMX19_03493 0.84 -0.2 908,848 - MPMX19_03493 0.84 -0.5 908,848 - MPMX19_03493 0.84 -0.3 908,848 - MPMX19_03493 0.84 +0.5 909,126 + -1.0 909,126 + +0.6 909,126 + +0.3 909,127 - -1.4 909,127 - -0.4 909,127 - +1.0 909,131 - -1.1 909,225 + +0.6 909,227 + +0.7 909,227 + -1.0 909,362 - -0.2 909,362 - +1.6 909,380 - -0.2 909,380 - -0.9 909,423 + +0.2 909,424 - -0.2
Or see this region's nucleotide sequence