Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03113 and MPMX19_03114 overlap by 4 nucleotides MPMX19_03114 and MPMX19_03115 overlap by 23 nucleotides MPMX19_03115 and MPMX19_03116 are separated by 50 nucleotides
MPMX19_03113: MPMX19_03113 - hypothetical protein, at 398,437 to 399,270
_03113
MPMX19_03114: MPMX19_03114 - hypothetical protein, at 399,267 to 400,196
_03114
MPMX19_03115: MPMX19_03115 - hypothetical protein, at 400,174 to 401,337
_03115
MPMX19_03116: MPMX19_03116 - Vitamin B12 import ATP-binding protein BtuD, at 401,388 to 402,500
_03116
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.232 kb on + strand at 399.232 kb on + strand at 399.232 kb on + strand at 399.232 kb on + strand at 399.233 kb on - strand at 399.233 kb on - strand at 399.304 kb on + strand at 399.304 kb on + strand at 399.304 kb on + strand at 399.305 kb on - strand at 399.305 kb on - strand at 399.305 kb on - strand at 399.334 kb on + strand at 399.335 kb on - strand at 399.335 kb on - strand at 399.335 kb on - strand at 399.335 kb on - strand at 399.335 kb on - strand at 399.367 kb on + strand, within MPMX19_03114 at 399.367 kb on + strand, within MPMX19_03114 at 399.391 kb on + strand, within MPMX19_03114 at 399.392 kb on - strand, within MPMX19_03114 at 399.805 kb on + strand, within MPMX19_03114 at 399.857 kb on - strand, within MPMX19_03114 at 399.940 kb on + strand, within MPMX19_03114 at 399.940 kb on + strand, within MPMX19_03114 at 399.940 kb on + strand, within MPMX19_03114 at 399.941 kb on - strand, within MPMX19_03114 at 399.941 kb on - strand, within MPMX19_03114 at 400.027 kb on + strand, within MPMX19_03114 at 400.028 kb on - strand, within MPMX19_03114 at 400.196 kb on + strand at 400.196 kb on + strand at 400.196 kb on + strand at 400.196 kb on + strand at 400.196 kb on + strand at 400.196 kb on + strand at 400.196 kb on + strand at 400.196 kb on + strand at 400.197 kb on - strand at 400.197 kb on - strand at 400.197 kb on - strand at 400.197 kb on - strand at 400.197 kb on - strand at 400.197 kb on - strand at 400.197 kb on - strand at 400.197 kb on - strand at 400.322 kb on + strand, within MPMX19_03115 at 400.322 kb on + strand, within MPMX19_03115 at 400.322 kb on + strand, within MPMX19_03115 at 400.322 kb on + strand, within MPMX19_03115 at 400.322 kb on + strand, within MPMX19_03115 at 400.322 kb on + strand, within MPMX19_03115 at 400.322 kb on + strand, within MPMX19_03115 at 400.322 kb on + strand, within MPMX19_03115 at 400.323 kb on - strand, within MPMX19_03115 at 400.323 kb on - strand, within MPMX19_03115 at 400.323 kb on - strand, within MPMX19_03115 at 400.323 kb on - strand, within MPMX19_03115 at 400.323 kb on - strand, within MPMX19_03115 at 400.323 kb on - strand, within MPMX19_03115 at 400.323 kb on - strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.451 kb on + strand, within MPMX19_03115 at 400.452 kb on - strand, within MPMX19_03115 at 400.452 kb on - strand, within MPMX19_03115 at 400.452 kb on - strand, within MPMX19_03115 at 400.452 kb on - strand, within MPMX19_03115 at 400.452 kb on - strand, within MPMX19_03115 at 400.452 kb on - strand, within MPMX19_03115 at 400.452 kb on - strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.454 kb on + strand, within MPMX19_03115 at 400.455 kb on - strand, within MPMX19_03115 at 400.455 kb on - strand, within MPMX19_03115 at 400.455 kb on - strand, within MPMX19_03115 at 400.455 kb on - strand, within MPMX19_03115 at 400.455 kb on - strand, within MPMX19_03115 at 400.455 kb on - strand, within MPMX19_03115 at 400.535 kb on + strand, within MPMX19_03115 at 400.535 kb on + strand, within MPMX19_03115 at 400.535 kb on + strand, within MPMX19_03115 at 400.535 kb on + strand, within MPMX19_03115 at 400.535 kb on + strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.536 kb on - strand, within MPMX19_03115 at 400.689 kb on - strand, within MPMX19_03115 at 400.784 kb on + strand, within MPMX19_03115 at 400.784 kb on + strand, within MPMX19_03115 at 400.785 kb on - strand, within MPMX19_03115 at 400.785 kb on - strand, within MPMX19_03115 at 400.832 kb on + strand, within MPMX19_03115 at 400.832 kb on + strand, within MPMX19_03115 at 400.833 kb on - strand, within MPMX19_03115 at 400.833 kb on - strand, within MPMX19_03115 at 400.868 kb on + strand, within MPMX19_03115 at 400.869 kb on - strand, within MPMX19_03115 at 400.869 kb on - strand, within MPMX19_03115 at 400.869 kb on - strand, within MPMX19_03115 at 400.907 kb on + strand, within MPMX19_03115 at 400.908 kb on - strand, within MPMX19_03115 at 400.908 kb on - strand, within MPMX19_03115 at 400.908 kb on - strand, within MPMX19_03115 at 400.985 kb on + strand, within MPMX19_03115 at 400.985 kb on + strand, within MPMX19_03115 at 400.986 kb on - strand, within MPMX19_03115 at 400.986 kb on - strand, within MPMX19_03115 at 401.099 kb on + strand, within MPMX19_03115 at 401.099 kb on + strand, within MPMX19_03115 at 401.189 kb on + strand, within MPMX19_03115 at 401.189 kb on + strand, within MPMX19_03115 at 401.189 kb on + strand, within MPMX19_03115 at 401.190 kb on - strand, within MPMX19_03115 at 401.201 kb on + strand, within MPMX19_03115 at 401.202 kb on - strand, within MPMX19_03115 at 401.202 kb on - strand, within MPMX19_03115 at 401.836 kb on + strand, within MPMX19_03116 at 401.836 kb on + strand, within MPMX19_03116 at 402.209 kb on - strand, within MPMX19_03116 at 402.209 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116 at 402.251 kb on - strand, within MPMX19_03116
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 399,232 + -0.6 399,232 + -1.2 399,232 + -0.0 399,232 + -1.6 399,233 - +0.4 399,233 - -0.3 399,304 + -0.6 399,304 + -1.7 399,304 + +0.0 399,305 - +0.3 399,305 - -2.3 399,305 - -1.4 399,334 + -0.7 399,335 - -0.2 399,335 - -0.1 399,335 - -0.9 399,335 - -0.4 399,335 - -0.9 399,367 + MPMX19_03114 0.11 +1.0 399,367 + MPMX19_03114 0.11 +0.4 399,391 + MPMX19_03114 0.13 -1.0 399,392 - MPMX19_03114 0.13 +0.0 399,805 + MPMX19_03114 0.58 +0.6 399,857 - MPMX19_03114 0.63 -0.6 399,940 + MPMX19_03114 0.72 -0.5 399,940 + MPMX19_03114 0.72 -0.5 399,940 + MPMX19_03114 0.72 +0.8 399,941 - MPMX19_03114 0.72 -0.4 399,941 - MPMX19_03114 0.72 +2.0 400,027 + MPMX19_03114 0.82 +0.4 400,028 - MPMX19_03114 0.82 +0.1 400,196 + +0.0 400,196 + +0.4 400,196 + -0.4 400,196 + -1.3 400,196 + +1.0 400,196 + +0.1 400,196 + -0.2 400,196 + -0.1 400,197 - -0.4 400,197 - -1.8 400,197 - +1.0 400,197 - +0.8 400,197 - +0.3 400,197 - -0.7 400,197 - -0.9 400,197 - -1.1 400,322 + MPMX19_03115 0.13 -0.7 400,322 + MPMX19_03115 0.13 +0.0 400,322 + MPMX19_03115 0.13 +0.6 400,322 + MPMX19_03115 0.13 -0.4 400,322 + MPMX19_03115 0.13 -0.5 400,322 + MPMX19_03115 0.13 -0.9 400,322 + MPMX19_03115 0.13 -0.2 400,322 + MPMX19_03115 0.13 +0.1 400,323 - MPMX19_03115 0.13 +0.1 400,323 - MPMX19_03115 0.13 -0.8 400,323 - MPMX19_03115 0.13 -1.1 400,323 - MPMX19_03115 0.13 +1.1 400,323 - MPMX19_03115 0.13 -0.7 400,323 - MPMX19_03115 0.13 -1.1 400,323 - MPMX19_03115 0.13 -2.1 400,451 + MPMX19_03115 0.24 -0.1 400,451 + MPMX19_03115 0.24 +0.2 400,451 + MPMX19_03115 0.24 -0.7 400,451 + MPMX19_03115 0.24 -0.9 400,451 + MPMX19_03115 0.24 -1.7 400,451 + MPMX19_03115 0.24 -0.3 400,451 + MPMX19_03115 0.24 +0.3 400,451 + MPMX19_03115 0.24 -1.5 400,452 - MPMX19_03115 0.24 -0.5 400,452 - MPMX19_03115 0.24 -0.9 400,452 - MPMX19_03115 0.24 -1.3 400,452 - MPMX19_03115 0.24 -0.2 400,452 - MPMX19_03115 0.24 +0.1 400,452 - MPMX19_03115 0.24 -0.6 400,452 - MPMX19_03115 0.24 -0.7 400,454 + MPMX19_03115 0.24 -0.8 400,454 + MPMX19_03115 0.24 -0.4 400,454 + MPMX19_03115 0.24 -0.2 400,454 + MPMX19_03115 0.24 -0.8 400,454 + MPMX19_03115 0.24 +0.2 400,454 + MPMX19_03115 0.24 +0.1 400,454 + MPMX19_03115 0.24 +0.3 400,454 + MPMX19_03115 0.24 +0.2 400,455 - MPMX19_03115 0.24 +0.3 400,455 - MPMX19_03115 0.24 -3.2 400,455 - MPMX19_03115 0.24 -2.3 400,455 - MPMX19_03115 0.24 +1.4 400,455 - MPMX19_03115 0.24 -1.2 400,455 - MPMX19_03115 0.24 -0.3 400,535 + MPMX19_03115 0.31 -1.2 400,535 + MPMX19_03115 0.31 -1.3 400,535 + MPMX19_03115 0.31 -0.8 400,535 + MPMX19_03115 0.31 +0.9 400,535 + MPMX19_03115 0.31 -0.7 400,536 - MPMX19_03115 0.31 -1.2 400,536 - MPMX19_03115 0.31 +0.4 400,536 - MPMX19_03115 0.31 +0.0 400,536 - MPMX19_03115 0.31 -0.5 400,536 - MPMX19_03115 0.31 +0.7 400,536 - MPMX19_03115 0.31 -0.2 400,536 - MPMX19_03115 0.31 +0.0 400,536 - MPMX19_03115 0.31 -0.7 400,689 - MPMX19_03115 0.44 -1.0 400,784 + MPMX19_03115 0.52 +0.4 400,784 + MPMX19_03115 0.52 +0.5 400,785 - MPMX19_03115 0.52 -0.8 400,785 - MPMX19_03115 0.52 -1.6 400,832 + MPMX19_03115 0.57 +0.0 400,832 + MPMX19_03115 0.57 +0.3 400,833 - MPMX19_03115 0.57 +1.1 400,833 - MPMX19_03115 0.57 -0.3 400,868 + MPMX19_03115 0.60 -1.3 400,869 - MPMX19_03115 0.60 +0.0 400,869 - MPMX19_03115 0.60 +0.5 400,869 - MPMX19_03115 0.60 -0.5 400,907 + MPMX19_03115 0.63 -1.9 400,908 - MPMX19_03115 0.63 -0.9 400,908 - MPMX19_03115 0.63 +0.4 400,908 - MPMX19_03115 0.63 +0.1 400,985 + MPMX19_03115 0.70 +0.4 400,985 + MPMX19_03115 0.70 +1.2 400,986 - MPMX19_03115 0.70 +0.2 400,986 - MPMX19_03115 0.70 -0.5 401,099 + MPMX19_03115 0.79 -1.3 401,099 + MPMX19_03115 0.79 +0.7 401,189 + MPMX19_03115 0.87 -0.9 401,189 + MPMX19_03115 0.87 -0.3 401,189 + MPMX19_03115 0.87 -2.1 401,190 - MPMX19_03115 0.87 +0.9 401,201 + MPMX19_03115 0.88 +0.6 401,202 - MPMX19_03115 0.88 -0.4 401,202 - MPMX19_03115 0.88 +0.0 401,836 + MPMX19_03116 0.40 +0.0 401,836 + MPMX19_03116 0.40 -0.5 402,209 - MPMX19_03116 0.74 -0.7 402,209 - MPMX19_03116 0.74 -0.4 402,251 - MPMX19_03116 0.78 +1.1 402,251 - MPMX19_03116 0.78 -1.3 402,251 - MPMX19_03116 0.78 -1.2 402,251 - MPMX19_03116 0.78 -1.1 402,251 - MPMX19_03116 0.78 -2.5 402,251 - MPMX19_03116 0.78 -0.1 402,251 - MPMX19_03116 0.78 -0.9
Or see this region's nucleotide sequence