Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03074 and MPMX19_03075 are separated by 91 nucleotides MPMX19_03075 and MPMX19_03076 overlap by 4 nucleotides
MPMX19_03074: MPMX19_03074 - Vitamin B12 transporter BtuB, at 338,739 to 340,796
_03074
MPMX19_03075: MPMX19_03075 - hypothetical protein, at 340,888 to 342,252
_03075
MPMX19_03076: MPMX19_03076 - hypothetical protein, at 342,249 to 343,586
_03076
Position (kb)
340
341
342
343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 340.050 kb on + strand, within MPMX19_03074 at 340.050 kb on + strand, within MPMX19_03074 at 340.051 kb on - strand, within MPMX19_03074 at 340.051 kb on - strand, within MPMX19_03074 at 340.098 kb on + strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.641 kb on + strand at 340.641 kb on + strand at 340.641 kb on + strand at 340.642 kb on - strand at 340.668 kb on + strand at 340.668 kb on + strand at 340.668 kb on + strand at 340.669 kb on - strand at 340.669 kb on - strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.812 kb on + strand at 340.812 kb on + strand at 340.812 kb on + strand at 340.813 kb on - strand at 340.813 kb on - strand at 340.849 kb on + strand at 340.851 kb on + strand at 340.863 kb on + strand at 340.865 kb on + strand at 340.889 kb on + strand at 340.890 kb on - strand at 341.027 kb on + strand, within MPMX19_03075 at 341.027 kb on + strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.164 kb on - strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.388 kb on + strand, within MPMX19_03075 at 341.389 kb on - strand, within MPMX19_03075 at 341.873 kb on + strand, within MPMX19_03075 at 341.873 kb on + strand, within MPMX19_03075 at 341.873 kb on + strand, within MPMX19_03075 at 341.873 kb on + strand, within MPMX19_03075 at 341.874 kb on - strand, within MPMX19_03075 at 341.874 kb on - strand, within MPMX19_03075 at 342.494 kb on + strand, within MPMX19_03076 at 342.494 kb on + strand, within MPMX19_03076 at 342.495 kb on - strand, within MPMX19_03076 at 342.495 kb on - strand, within MPMX19_03076 at 342.625 kb on + strand, within MPMX19_03076 at 342.625 kb on + strand, within MPMX19_03076 at 342.625 kb on + strand, within MPMX19_03076 at 342.626 kb on - strand, within MPMX19_03076 at 342.631 kb on + strand, within MPMX19_03076 at 342.631 kb on + strand, within MPMX19_03076 at 342.631 kb on + strand, within MPMX19_03076 at 342.631 kb on + strand, within MPMX19_03076 at 342.631 kb on + strand, within MPMX19_03076 at 342.632 kb on - strand, within MPMX19_03076 at 342.632 kb on - strand, within MPMX19_03076 at 342.632 kb on - strand, within MPMX19_03076 at 342.632 kb on - strand, within MPMX19_03076 at 342.688 kb on + strand, within MPMX19_03076 at 342.688 kb on + strand, within MPMX19_03076 at 342.688 kb on + strand, within MPMX19_03076 at 342.688 kb on + strand, within MPMX19_03076 at 342.688 kb on + strand, within MPMX19_03076 at 342.688 kb on + strand, within MPMX19_03076 at 342.689 kb on - strand, within MPMX19_03076 at 342.689 kb on - strand, within MPMX19_03076 at 342.689 kb on - strand, within MPMX19_03076 at 342.689 kb on - strand, within MPMX19_03076 at 342.689 kb on - strand, within MPMX19_03076 at 343.045 kb on + strand, within MPMX19_03076 at 343.045 kb on + strand, within MPMX19_03076 at 343.045 kb on + strand, within MPMX19_03076 at 343.046 kb on - strand, within MPMX19_03076
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 340,050 + MPMX19_03074 0.64 +0.4 340,050 + MPMX19_03074 0.64 -0.4 340,051 - MPMX19_03074 0.64 -1.6 340,051 - MPMX19_03074 0.64 -0.7 340,098 + MPMX19_03074 0.66 -0.3 340,099 - MPMX19_03074 0.66 -0.1 340,099 - MPMX19_03074 0.66 -0.9 340,099 - MPMX19_03074 0.66 -0.5 340,236 + MPMX19_03074 0.73 -1.2 340,236 + MPMX19_03074 0.73 -0.3 340,236 + MPMX19_03074 0.73 +0.6 340,236 + MPMX19_03074 0.73 -0.2 340,236 + MPMX19_03074 0.73 -0.1 340,237 - MPMX19_03074 0.73 +0.6 340,237 - MPMX19_03074 0.73 -0.4 340,237 - MPMX19_03074 0.73 -1.4 340,446 + MPMX19_03074 0.83 +0.0 340,446 + MPMX19_03074 0.83 -0.5 340,446 + MPMX19_03074 0.83 -0.4 340,446 + MPMX19_03074 0.83 -0.4 340,446 + MPMX19_03074 0.83 -0.5 340,446 + MPMX19_03074 0.83 -2.3 340,446 + MPMX19_03074 0.83 -0.7 340,446 + MPMX19_03074 0.83 +0.7 340,446 + MPMX19_03074 0.83 -1.2 340,446 + MPMX19_03074 0.83 +0.2 340,446 + MPMX19_03074 0.83 -0.6 340,446 + MPMX19_03074 0.83 +0.0 340,446 + MPMX19_03074 0.83 -0.1 340,446 + MPMX19_03074 0.83 +0.6 340,446 + MPMX19_03074 0.83 +0.4 340,447 - MPMX19_03074 0.83 -1.1 340,447 - MPMX19_03074 0.83 -0.8 340,447 - MPMX19_03074 0.83 -0.3 340,447 - MPMX19_03074 0.83 +0.3 340,447 - MPMX19_03074 0.83 -0.2 340,641 + -0.1 340,641 + -0.7 340,641 + -0.8 340,642 - -0.2 340,668 + +0.3 340,668 + +0.4 340,668 + -0.2 340,669 - +0.4 340,669 - -1.2 340,728 + +0.0 340,728 + +0.5 340,728 + +0.5 340,728 + -0.7 340,728 + +0.2 340,729 - +0.5 340,729 - -0.8 340,729 - +0.1 340,729 - +0.7 340,729 - +0.3 340,729 - -1.4 340,812 + -0.6 340,812 + +0.7 340,812 + +0.5 340,813 - -0.2 340,813 - +0.6 340,849 + +1.6 340,851 + -1.0 340,863 + +0.3 340,865 + -0.7 340,889 + -1.4 340,890 - -1.0 341,027 + MPMX19_03075 0.10 +0.4 341,027 + MPMX19_03075 0.10 +0.3 341,028 - MPMX19_03075 0.10 +0.6 341,028 - MPMX19_03075 0.10 +1.0 341,028 - MPMX19_03075 0.10 +0.5 341,028 - MPMX19_03075 0.10 -0.4 341,028 - MPMX19_03075 0.10 +0.2 341,028 - MPMX19_03075 0.10 +1.1 341,164 - MPMX19_03075 0.20 -1.2 341,333 + MPMX19_03075 0.33 -0.2 341,333 + MPMX19_03075 0.33 -0.5 341,333 + MPMX19_03075 0.33 +0.3 341,333 + MPMX19_03075 0.33 +1.1 341,334 - MPMX19_03075 0.33 -0.2 341,334 - MPMX19_03075 0.33 +0.6 341,334 - MPMX19_03075 0.33 +0.2 341,334 - MPMX19_03075 0.33 +0.4 341,388 + MPMX19_03075 0.37 +0.4 341,389 - MPMX19_03075 0.37 -0.4 341,873 + MPMX19_03075 0.72 -1.1 341,873 + MPMX19_03075 0.72 +0.2 341,873 + MPMX19_03075 0.72 +0.3 341,873 + MPMX19_03075 0.72 -0.6 341,874 - MPMX19_03075 0.72 -0.5 341,874 - MPMX19_03075 0.72 -1.6 342,494 + MPMX19_03076 0.18 -0.2 342,494 + MPMX19_03076 0.18 -2.1 342,495 - MPMX19_03076 0.18 +2.3 342,495 - MPMX19_03076 0.18 +0.0 342,625 + MPMX19_03076 0.28 -0.8 342,625 + MPMX19_03076 0.28 +0.8 342,625 + MPMX19_03076 0.28 +0.3 342,626 - MPMX19_03076 0.28 +0.7 342,631 + MPMX19_03076 0.29 -0.2 342,631 + MPMX19_03076 0.29 -0.4 342,631 + MPMX19_03076 0.29 +0.4 342,631 + MPMX19_03076 0.29 +1.3 342,631 + MPMX19_03076 0.29 -0.7 342,632 - MPMX19_03076 0.29 +0.6 342,632 - MPMX19_03076 0.29 +0.8 342,632 - MPMX19_03076 0.29 +0.6 342,632 - MPMX19_03076 0.29 -1.6 342,688 + MPMX19_03076 0.33 -0.4 342,688 + MPMX19_03076 0.33 -1.0 342,688 + MPMX19_03076 0.33 -1.1 342,688 + MPMX19_03076 0.33 -0.1 342,688 + MPMX19_03076 0.33 +0.2 342,688 + MPMX19_03076 0.33 -0.4 342,689 - MPMX19_03076 0.33 -0.6 342,689 - MPMX19_03076 0.33 -0.6 342,689 - MPMX19_03076 0.33 +0.0 342,689 - MPMX19_03076 0.33 -2.1 342,689 - MPMX19_03076 0.33 -0.5 343,045 + MPMX19_03076 0.59 -0.1 343,045 + MPMX19_03076 0.59 -0.2 343,045 + MPMX19_03076 0.59 -1.1 343,046 - MPMX19_03076 0.60 -1.4
Or see this region's nucleotide sequence