Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02099

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
2,195,886	+		MPMX19_02098	0.12	+1.1
2,195,887	-		MPMX19_02098	0.12	-1.3
2,195,887	-		MPMX19_02098	0.12	-0.8
2,195,945	+		MPMX19_02098	0.21	+0.6
2,195,945	+		MPMX19_02098	0.21	-0.1
2,195,945	+		MPMX19_02098	0.21	-1.8
2,195,945	+		MPMX19_02098	0.21	+0.2
2,195,945	+		MPMX19_02098	0.21	+1.2
2,195,945	+		MPMX19_02098	0.21	+0.8
2,195,945	+		MPMX19_02098	0.21	-0.3
2,195,945	+		MPMX19_02098	0.21	-0.1
2,195,945	+		MPMX19_02098	0.21	-0.7
2,195,945	+		MPMX19_02098	0.21	-0.3
2,195,945	+		MPMX19_02098	0.21	-0.3
2,195,945	+		MPMX19_02098	0.21	-0.0
2,195,945	+		MPMX19_02098	0.21	-0.2
2,195,945	+		MPMX19_02098	0.21	-1.0
2,195,946	+		MPMX19_02098	0.21	-1.4
2,195,946	-		MPMX19_02098	0.21	+0.4
2,195,946	-		MPMX19_02098	0.21	-1.1
2,195,946	-		MPMX19_02098	0.21	-0.2
2,195,946	-		MPMX19_02098	0.21	-1.3
2,195,946	-		MPMX19_02098	0.21	+0.4
2,195,946	-		MPMX19_02098	0.21	-0.8
2,195,946	-		MPMX19_02098	0.21	-1.6
2,195,946	-		MPMX19_02098	0.21	-0.3
2,195,946	-		MPMX19_02098	0.21	-0.8
2,195,946	-		MPMX19_02098	0.21	+0.6
2,195,946	-		MPMX19_02098	0.21	-0.3
2,195,946	-		MPMX19_02098	0.21	-0.8
2,195,951	+		MPMX19_02098	0.22	-0.3
2,195,951	+		MPMX19_02098	0.22	-0.0
2,195,951	+		MPMX19_02098	0.22	+1.1
2,195,951	+		MPMX19_02098	0.22	-1.0
2,195,951	+		MPMX19_02098	0.22	-0.4
2,195,951	+		MPMX19_02098	0.22	-0.1
2,195,951	+		MPMX19_02098	0.22	+0.2
2,195,952	-		MPMX19_02098	0.22	-1.0
2,195,952	-		MPMX19_02098	0.22	+0.9
2,195,952	-		MPMX19_02098	0.22	-2.7
2,195,952	-		MPMX19_02098	0.22	+0.9
2,195,952	-		MPMX19_02098	0.22	-1.2
2,195,952	-		MPMX19_02098	0.22	-1.0
2,195,952	-		MPMX19_02098	0.22	-1.3
2,195,987	+		MPMX19_02098	0.28	+0.2
2,195,987	+		MPMX19_02098	0.28	+0.1
2,195,987	+		MPMX19_02098	0.28	+0.5
2,195,987	+		MPMX19_02098	0.28	+0.2
2,195,987	+		MPMX19_02098	0.28	-2.0
2,195,987	+		MPMX19_02098	0.28	+0.5
2,195,987	+		MPMX19_02098	0.28	-1.4
2,195,987	+		MPMX19_02098	0.28	+0.2
2,195,987	+		MPMX19_02098	0.28	-0.1
2,195,988	-		MPMX19_02098	0.28	-1.0
2,195,988	-		MPMX19_02098	0.28	+0.1
2,196,215	+		MPMX19_02098	0.65	-0.7
2,196,215	+		MPMX19_02098	0.65	+1.5
2,196,215	+		MPMX19_02098	0.65	-1.5
2,196,215	+		MPMX19_02098	0.65	-0.5
2,196,215	+		MPMX19_02098	0.65	+0.1
2,196,215	+		MPMX19_02098	0.65	-1.3
2,196,215	+		MPMX19_02098	0.65	+0.8
2,196,215	+		MPMX19_02098	0.65	-0.6
2,196,215	+		MPMX19_02098	0.65	+0.2
2,196,215	+		MPMX19_02098	0.65	-0.3
2,196,215	+		MPMX19_02098	0.65	-0.2
2,196,215	+		MPMX19_02098	0.65	-0.4
2,196,215	+		MPMX19_02098	0.65	+1.5
2,196,215	+		MPMX19_02098	0.65	-1.5
2,196,215	+		MPMX19_02098	0.65	-0.3
2,196,216	-		MPMX19_02098	0.65	+0.5
2,196,216	-		MPMX19_02098	0.65	-1.3
2,196,216	-		MPMX19_02098	0.65	+0.7
2,196,216	-		MPMX19_02098	0.65	-0.2
2,196,216	-		MPMX19_02098	0.65	-0.2
2,196,216	-		MPMX19_02098	0.65	+0.0
2,196,216	-		MPMX19_02098	0.65	-0.1
2,196,216	-		MPMX19_02098	0.65	-1.5
2,196,216	-		MPMX19_02098	0.65	-0.4
2,196,216	-		MPMX19_02098	0.65	-0.7
2,196,216	-		MPMX19_02098	0.65	-0.5
2,196,216	-		MPMX19_02098	0.65	-0.6
2,196,216	-		MPMX19_02098	0.65	-0.2
2,196,216	-		MPMX19_02098	0.65	-0.8
2,196,216	-		MPMX19_02098	0.65	-1.2
2,196,416	+				-0.5
2,196,416	+				-0.0
2,196,416	+				-0.4
2,196,416	+				+0.5
2,196,417	-				+0.1
2,196,417	-				-0.3
2,196,417	-				-0.3
2,196,417	-				-0.7
2,196,419	+				-1.1
2,196,419	+				-0.1
2,196,419	+				-0.8
2,196,419	+				+0.2
2,196,420	-				-0.9
2,196,420	-				+0.2
2,196,420	-				-1.6
2,196,420	-				-1.0
2,196,470	+				+0.1
2,196,471	-				+0.3
2,196,471	-				+0.1
2,196,471	-				-1.8
2,196,681	+		MPMX19_02099	0.21	-1.4
2,196,681	+		MPMX19_02099	0.21	-1.0
2,196,682	-		MPMX19_02099	0.21	-0.8
2,196,682	-		MPMX19_02099	0.21	+0.4
2,196,682	-		MPMX19_02099	0.21	-1.0
2,196,693	+		MPMX19_02099	0.22	-0.5
2,196,693	+		MPMX19_02099	0.22	-0.7
2,196,693	+		MPMX19_02099	0.22	-1.0
2,196,693	+		MPMX19_02099	0.22	-0.8
2,196,693	+		MPMX19_02099	0.22	-0.1
2,196,694	-		MPMX19_02099	0.22	+0.9
2,196,694	-		MPMX19_02099	0.22	-0.4
2,196,694	-		MPMX19_02099	0.22	-0.8
2,196,708	+		MPMX19_02099	0.24	+0.9
2,196,708	+		MPMX19_02099	0.24	-0.0
2,196,708	+		MPMX19_02099	0.24	-0.2
2,196,708	+		MPMX19_02099	0.24	+0.7
2,196,708	+		MPMX19_02099	0.24	-1.9
2,196,708	+		MPMX19_02099	0.24	-0.4
2,196,708	+		MPMX19_02099	0.24	-1.3
2,196,709	-		MPMX19_02099	0.24	-1.3
2,196,738	+		MPMX19_02099	0.28	-1.2
2,196,738	+		MPMX19_02099	0.28	+0.1
2,196,738	+		MPMX19_02099	0.28	-0.8
2,196,738	+		MPMX19_02099	0.28	-0.2
2,196,738	+		MPMX19_02099	0.28	-0.5
2,196,739	-		MPMX19_02099	0.28	+0.2
2,196,739	-		MPMX19_02099	0.28	-1.3
2,196,739	-		MPMX19_02099	0.28	-0.4
2,196,741	+		MPMX19_02099	0.28	-0.5
2,196,741	+		MPMX19_02099	0.28	-0.6
2,196,741	+		MPMX19_02099	0.28	+0.7
2,196,741	+		MPMX19_02099	0.28	+0.1
2,196,741	+		MPMX19_02099	0.28	-0.8
2,196,742	-		MPMX19_02099	0.28	-0.0
2,196,742	-		MPMX19_02099	0.28	-0.2
2,196,742	-		MPMX19_02099	0.28	+0.2
2,196,742	-		MPMX19_02099	0.28	-1.1
2,196,742	-		MPMX19_02099	0.28	+0.6
2,196,747	+		MPMX19_02099	0.29	-2.1
2,196,747	+		MPMX19_02099	0.29	-0.3
2,196,747	+		MPMX19_02099	0.29	-2.4
2,196,747	+		MPMX19_02099	0.29	-0.5
2,196,747	+		MPMX19_02099	0.29	-0.2
2,196,747	+		MPMX19_02099	0.29	-1.0
2,196,747	+		MPMX19_02099	0.29	-0.5
2,196,747	+		MPMX19_02099	0.29	-0.2
2,196,747	+		MPMX19_02099	0.29	-0.1
2,196,747	+		MPMX19_02099	0.29	+0.3
2,196,747	+		MPMX19_02099	0.29	-1.5
2,196,748	-		MPMX19_02099	0.29	-0.8
2,196,748	-		MPMX19_02099	0.29	-0.4
2,196,748	-		MPMX19_02099	0.29	-1.2
2,196,748	-		MPMX19_02099	0.29	-0.3
2,196,748	-		MPMX19_02099	0.29	-1.3
2,196,748	-		MPMX19_02099	0.29	-0.9
2,196,748	-		MPMX19_02099	0.29	+1.1
2,196,748	-		MPMX19_02099	0.29	+0.2
2,196,748	-		MPMX19_02099	0.29	-0.1
2,196,748	-		MPMX19_02099	0.29	-1.2
2,196,748	-		MPMX19_02099	0.29	-1.8
2,196,748	-		MPMX19_02099	0.29	+0.4
2,196,748	-		MPMX19_02099	0.29	-0.8
2,196,834	+		MPMX19_02099	0.39	-0.7
2,196,834	+		MPMX19_02099	0.39	-0.2
2,196,835	-		MPMX19_02099	0.40	+0.5
2,196,835	-		MPMX19_02099	0.40	-0.4
2,196,835	-		MPMX19_02099	0.40	-0.9
2,196,835	-		MPMX19_02099	0.40	+0.6
2,196,835	-		MPMX19_02099	0.40	-1.1
2,196,835	-		MPMX19_02099	0.40	-1.8
2,196,835	-		MPMX19_02099	0.40	-0.9
2,196,835	-		MPMX19_02099	0.40	+1.5
2,196,846	+		MPMX19_02099	0.41	+0.3
2,196,846	+		MPMX19_02099	0.41	+0.2
2,196,846	+		MPMX19_02099	0.41	+1.0
2,196,846	+		MPMX19_02099	0.41	-0.3
2,196,846	+		MPMX19_02099	0.41	+2.2
2,196,847	-		MPMX19_02099	0.41	-1.4
2,196,847	-		MPMX19_02099	0.41	-0.1
2,196,847	-		MPMX19_02099	0.41	-0.7
2,196,847	-		MPMX19_02099	0.41	-0.5
2,196,847	-		MPMX19_02099	0.41	-1.6
2,196,847	-		MPMX19_02099	0.41	-0.1
2,196,847	-		MPMX19_02099	0.41	-0.7
2,196,852	+		MPMX19_02099	0.42	-1.1
2,196,853	-		MPMX19_02099	0.42	+0.2
2,196,853	-		MPMX19_02099	0.42	-1.3
2,196,853	-		MPMX19_02099	0.42	-0.7
2,196,853	-		MPMX19_02099	0.42	+0.1
2,196,853	-		MPMX19_02099	0.42	+0.7
2,196,853	-		MPMX19_02099	0.42	-0.5
2,196,864	+		MPMX19_02099	0.43	+0.3
2,196,864	+		MPMX19_02099	0.43	-1.7
2,196,865	-		MPMX19_02099	0.43	-2.3
2,196,865	-		MPMX19_02099	0.43	+0.0
2,196,865	-		MPMX19_02099	0.43	+0.3
2,196,865	-		MPMX19_02099	0.43	+2.0
2,196,865	-		MPMX19_02099	0.43	+0.7
2,196,865	-		MPMX19_02099	0.43	-0.4
2,196,865	-		MPMX19_02099	0.43	-0.7
2,196,865	-		MPMX19_02099	0.43	+0.0
2,196,865	-		MPMX19_02099	0.43	+2.1
2,196,945	+		MPMX19_02099	0.53	+0.2
2,196,945	+		MPMX19_02099	0.53	+0.9
2,196,945	+		MPMX19_02099	0.53	+0.4
2,196,946	-		MPMX19_02099	0.53	-0.3
2,196,946	-		MPMX19_02099	0.53	+0.3
2,196,946	-		MPMX19_02099	0.53	+0.2
2,196,946	-		MPMX19_02099	0.53	-0.5
2,196,948	+		MPMX19_02099	0.53	-0.8
2,196,948	+		MPMX19_02099	0.53	+0.4
2,196,948	+		MPMX19_02099	0.53	-1.1
2,196,948	+		MPMX19_02099	0.53	-0.9
2,196,948	+		MPMX19_02099	0.53	+0.4
2,196,948	+		MPMX19_02099	0.53	+0.3
2,196,948	+		MPMX19_02099	0.53	-0.6
2,196,948	+		MPMX19_02099	0.53	-0.3
2,196,948	+		MPMX19_02099	0.53	+0.0
2,196,949	-		MPMX19_02099	0.53	-0.3
2,196,949	-		MPMX19_02099	0.53	-1.3
2,196,949	-		MPMX19_02099	0.53	+0.4
2,196,949	-		MPMX19_02099	0.53	-1.5
2,196,949	-		MPMX19_02099	0.53	-0.5
2,196,949	-		MPMX19_02099	0.53	-1.3
2,196,949	-		MPMX19_02099	0.53	+0.9
2,196,949	-		MPMX19_02099	0.53	-1.1
2,196,949	-		MPMX19_02099	0.53	+0.1
2,196,949	-		MPMX19_02099	0.53	+0.5
2,196,949	-		MPMX19_02099	0.53	-1.2
2,196,949	-		MPMX19_02099	0.53	-1.4
2,197,200	+		MPMX19_02099	0.84	+0.5
2,197,200	+		MPMX19_02099	0.84	+0.2
2,197,200	+		MPMX19_02099	0.84	+0.6
2,197,200	+		MPMX19_02099	0.84	-0.4
2,197,200	+		MPMX19_02099	0.84	+0.0
2,197,201	-		MPMX19_02099	0.84	-3.3
2,197,201	-		MPMX19_02099	0.84	-1.5
2,197,201	-		MPMX19_02099	0.84	+0.1
2,197,209	+		MPMX19_02099	0.85	+0.5
2,197,209	+		MPMX19_02099	0.85	-2.1
2,197,209	+		MPMX19_02099	0.85	+0.0
2,197,209	+		MPMX19_02099	0.85	-0.1
2,197,209	+		MPMX19_02099	0.85	+0.4
2,197,210	-		MPMX19_02099	0.85	+0.2
2,197,210	-		MPMX19_02099	0.85	-0.5
2,197,210	-		MPMX19_02099	0.85	+0.6
2,197,210	-		MPMX19_02099	0.85	-1.5
2,197,210	-		MPMX19_02099	0.85	-0.8
2,197,210	-		MPMX19_02099	0.85	-0.0
2,197,344	-				-0.1
2,197,344	-				-0.4
2,197,385	+				-0.8
2,197,386	-				-0.3
2,197,386	-				-2.0
2,197,386	-				-0.3
2,197,481	+				+0.5
2,197,482	-				-0.2
2,197,567	+				+0.7
2,197,567	+				+0.1
2,197,567	+				-0.2
2,197,567	+				+0.1
2,197,567	+				+0.2
2,197,567	+				-0.0
2,197,567	+				+0.2