Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01605

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,681,655	+		MPMX19_01604	0.51	-1.0
1,681,655	+		MPMX19_01604	0.51	-0.6
1,681,655	+		MPMX19_01604	0.51	+0.3
1,681,655	+		MPMX19_01604	0.51	-0.8
1,681,655	+		MPMX19_01604	0.51	+0.4
1,681,655	+		MPMX19_01604	0.51	-0.1
1,681,656	-		MPMX19_01604	0.51	+0.2
1,681,656	-		MPMX19_01604	0.51	-0.9
1,681,656	-		MPMX19_01604	0.51	-1.7
1,681,656	-		MPMX19_01604	0.51	-1.4
1,681,656	-		MPMX19_01604	0.51	-0.2
1,681,656	-		MPMX19_01604	0.51	-0.9
1,681,656	-		MPMX19_01604	0.51	-2.2
1,681,656	-		MPMX19_01604	0.51	-0.9
1,681,656	-		MPMX19_01604	0.51	-1.8
1,682,282	+				+0.4
1,682,282	+				-1.6
1,682,283	-				+2.8
1,682,283	-				+0.8
1,682,283	-				+0.4
1,682,283	-				-0.9
1,682,371	+		MPMX19_01605	0.17	-1.9
1,682,371	+		MPMX19_01605	0.17	+0.7
1,682,371	+		MPMX19_01605	0.17	-1.1
1,682,371	+		MPMX19_01605	0.17	+0.5
1,682,371	+		MPMX19_01605	0.17	-0.8
1,682,371	+		MPMX19_01605	0.17	-1.3
1,682,371	+		MPMX19_01605	0.17	+0.4
1,682,371	+		MPMX19_01605	0.17	+0.0
1,682,371	+		MPMX19_01605	0.17	-0.5
1,682,371	+		MPMX19_01605	0.17	-2.5
1,682,371	+		MPMX19_01605	0.17	+0.5
1,682,371	+		MPMX19_01605	0.17	+1.9
1,682,371	+		MPMX19_01605	0.17	-0.8
1,682,371	+		MPMX19_01605	0.17	-1.3
1,682,371	+		MPMX19_01605	0.17	-0.2
1,682,371	+		MPMX19_01605	0.17	-0.3
1,682,371	+		MPMX19_01605	0.17	-0.1
1,682,371	+		MPMX19_01605	0.17	-0.2
1,682,371	+		MPMX19_01605	0.17	-0.3
1,682,371	+		MPMX19_01605	0.17	+1.0
1,682,371	+		MPMX19_01605	0.17	-1.6
1,682,371	+		MPMX19_01605	0.17	-0.5
1,682,371	+		MPMX19_01605	0.17	-1.8
1,682,371	+		MPMX19_01605	0.17	-0.8
1,682,371	+		MPMX19_01605	0.17	-2.1
1,682,371	+		MPMX19_01605	0.17	-1.5
1,682,372	-		MPMX19_01605	0.18	-0.5
1,682,372	-		MPMX19_01605	0.18	-0.1
1,682,372	-		MPMX19_01605	0.18	-0.1
1,682,372	-		MPMX19_01605	0.18	-1.5
1,682,372	-		MPMX19_01605	0.18	-0.1
1,682,372	-		MPMX19_01605	0.18	-0.5
1,682,372	-		MPMX19_01605	0.18	-0.2
1,682,372	-		MPMX19_01605	0.18	-1.5
1,682,372	-		MPMX19_01605	0.18	-0.1
1,682,372	-		MPMX19_01605	0.18	-1.4
1,682,372	-		MPMX19_01605	0.18	-0.1
1,682,372	-		MPMX19_01605	0.18	-2.2
1,682,372	-		MPMX19_01605	0.18	+1.2
1,682,372	-		MPMX19_01605	0.18	-2.6
1,682,372	-		MPMX19_01605	0.18	-2.4
1,682,372	-		MPMX19_01605	0.18	-1.3
1,682,372	-		MPMX19_01605	0.18	-0.3
1,682,372	-		MPMX19_01605	0.18	-1.3
1,682,372	-		MPMX19_01605	0.18	-1.8
1,682,372	-		MPMX19_01605	0.18	-0.3
1,682,372	-		MPMX19_01605	0.18	-0.7
1,682,372	-		MPMX19_01605	0.18	-0.6
1,682,372	-		MPMX19_01605	0.18	-3.3
1,682,372	-		MPMX19_01605	0.18	-0.8
1,682,372	-		MPMX19_01605	0.18	-0.9
1,682,372	-		MPMX19_01605	0.18	-1.6
1,682,372	-		MPMX19_01605	0.18	+0.3
1,682,372	-		MPMX19_01605	0.18	-0.6
1,682,372	-		MPMX19_01605	0.18	-1.2
1,682,372	-		MPMX19_01605	0.18	-2.3
1,682,372	-		MPMX19_01605	0.18	-1.3
1,682,372	-		MPMX19_01605	0.18	+0.5
1,682,372	-		MPMX19_01605	0.18	-1.3
1,682,372	-		MPMX19_01605	0.18	-0.6
1,682,372	-		MPMX19_01605	0.18	-1.9
1,682,372	-		MPMX19_01605	0.18	-1.7
1,682,599	+		MPMX19_01605	0.80	+0.5
1,682,599	+		MPMX19_01605	0.80	-1.2
1,682,600	-		MPMX19_01605	0.80	-1.2
1,682,647	+				-1.8
1,682,647	+				-0.1
1,682,647	+				+0.9
1,682,647	+				-2.1
1,682,647	+				+0.9
1,682,647	+				-0.0
1,682,648	-				+0.7
1,682,648	-				-0.5
1,682,648	-				-1.4
1,682,648	-				-0.6
1,682,648	-				-0.1
1,682,674	+				+0.2
1,682,674	+				-0.5
1,682,674	+				-2.7
1,682,674	+				+0.1
1,682,674	+				-0.1
1,682,674	+				-0.6
1,682,674	+				+0.5
1,682,674	+				-0.4
1,682,674	+				-1.2
1,682,674	+				-2.1
1,682,674	+				-0.8
1,682,674	+				-2.2
1,682,674	+				-0.5
1,682,674	+				-1.0
1,682,675	-				-0.8
1,682,675	-				-1.1
1,682,675	-				-0.8
1,682,675	-				-1.8
1,682,675	-				-0.8
1,682,675	-				-0.5
1,682,675	-				+0.2
1,682,675	-				-1.1
1,682,675	-				-1.1
1,682,675	-				-0.1
1,682,675	-				-0.7
1,682,675	-				+0.5
1,682,675	-				-1.0
1,682,675	-				-0.8
1,682,689	+				+0.5
1,682,689	+				-2.1
1,682,690	-				+0.5
1,682,690	-				-0.1
1,682,718	+				-3.0
1,682,748	-				-3.3
1,682,771	+				-0.3
1,682,771	+				-0.6
1,682,771	+				-1.0
1,682,771	+				-1.4
1,682,771	+				-0.3
1,682,771	+				-1.5
1,682,771	+				-0.9
1,682,771	+				-0.5
1,682,771	+				-1.5
1,682,771	+				-1.9
1,682,771	+				-1.3
1,682,771	+				-1.3
1,682,771	+				-0.4
1,682,771	+				-0.1
1,682,771	+				-2.3
1,682,772	-				+0.1
1,682,772	-				-1.6
1,682,772	-				-1.6
1,682,772	-				-0.2
1,682,772	-				-1.1
1,682,772	-				+1.1
1,682,772	-				-0.5
1,682,772	-				-0.3
1,682,772	-				-1.3
1,682,772	-				-0.8
1,682,772	-				+0.1
1,682,772	-				-1.3
1,682,780	-				-0.6
1,682,780	-				-0.9
1,682,828	+				-1.0
1,682,828	+				-0.1
1,682,828	+				+0.2
1,682,828	+				-1.2
1,682,840	+				-0.5
1,682,901	+				+0.5
1,682,901	+				-0.2
1,682,901	+				-0.6
1,682,901	+				-1.5
1,682,902	-				-1.5
1,682,902	-				-1.3
1,682,902	-				-0.2
1,682,902	-				-1.0
1,682,902	-				-0.4
1,683,004	+				-1.3
1,683,004	+				-0.9
1,683,004	+				+0.1
1,683,004	+				-0.3
1,683,004	+				-0.6
1,683,004	+				+0.4
1,683,004	+				-1.1
1,683,004	+				+0.2
1,683,004	+				-0.4
1,683,004	+				+0.5
1,683,004	+				-0.5
1,683,004	+				-0.2
1,683,004	+				-1.5
1,683,004	+				-0.3
1,683,004	+				-1.8
1,683,004	+				-0.4
1,683,005	-				-1.9
1,683,005	-				-1.3
1,683,005	-				-0.3
1,683,005	-				-0.8
1,683,005	-				+0.0
1,683,005	-				-0.7
1,683,005	-				-1.6
1,683,005	-				-1.5
1,683,005	-				+0.7
1,683,005	-				-0.5
1,683,005	-				+0.9
1,683,005	-				-1.8
1,683,005	-				-0.6
1,683,005	-				+0.5
1,683,005	-				-0.7
1,683,005	-				-0.9
1,683,181	+		MPMX19_01606	0.13	+0.8
1,683,181	+		MPMX19_01606	0.13	-2.3
1,683,181	+		MPMX19_01606	0.13	-1.6
1,683,181	+		MPMX19_01606	0.13	+0.2
1,683,181	+		MPMX19_01606	0.13	+0.1
1,683,181	+		MPMX19_01606	0.13	-1.4
1,683,182	-		MPMX19_01606	0.13	-1.1
1,683,182	-		MPMX19_01606	0.13	-1.0
1,683,182	-		MPMX19_01606	0.13	-0.7
1,683,182	-		MPMX19_01606	0.13	-0.2
1,683,196	+		MPMX19_01606	0.13	-0.5
1,683,196	+		MPMX19_01606	0.13	-2.4
1,683,196	+		MPMX19_01606	0.13	-1.6
1,683,196	+		MPMX19_01606	0.13	-0.5
1,683,196	+		MPMX19_01606	0.13	-1.3
1,683,196	+		MPMX19_01606	0.13	-2.0
1,683,196	+		MPMX19_01606	0.13	-0.7
1,683,196	+		MPMX19_01606	0.13	-0.1
1,683,196	+		MPMX19_01606	0.13	-1.8
1,683,196	+		MPMX19_01606	0.13	-0.3
1,683,196	+		MPMX19_01606	0.13	+0.1
1,683,196	+		MPMX19_01606	0.13	-0.6
1,683,196	+		MPMX19_01606	0.13	+0.4
1,683,196	+		MPMX19_01606	0.13	-0.9
1,683,196	+		MPMX19_01606	0.13	+0.9
1,683,196	+		MPMX19_01606	0.13	+0.1
1,683,197	-		MPMX19_01606	0.14	-1.1
1,683,197	-		MPMX19_01606	0.14	-1.2
1,683,197	-		MPMX19_01606	0.14	-0.9
1,683,197	-		MPMX19_01606	0.14	-1.6
1,683,197	-		MPMX19_01606	0.14	-1.2
1,683,197	-		MPMX19_01606	0.14	-1.3
1,683,197	-		MPMX19_01606	0.14	-1.1
1,683,197	-		MPMX19_01606	0.14	-1.3
1,683,197	-		MPMX19_01606	0.14	+0.4
1,683,197	-		MPMX19_01606	0.14	-0.3
1,683,197	-		MPMX19_01606	0.14	-1.5
1,683,197	-		MPMX19_01606	0.14	+0.6
1,683,197	-		MPMX19_01606	0.14	+0.0
1,683,197	-		MPMX19_01606	0.14	-1.3
1,683,197	-		MPMX19_01606	0.14	-0.3
1,683,200	-		MPMX19_01606	0.14	-1.2
1,683,200	-		MPMX19_01606	0.14	+1.7
1,683,325	+		MPMX19_01606	0.20	-0.7
1,683,325	+		MPMX19_01606	0.20	-0.7
1,683,325	+		MPMX19_01606	0.20	-1.6
1,683,325	+		MPMX19_01606	0.20	+0.2
1,683,325	+		MPMX19_01606	0.20	-0.4
1,683,325	+		MPMX19_01606	0.20	+0.3
1,683,325	+		MPMX19_01606	0.20	-0.9
1,683,325	+		MPMX19_01606	0.20	+0.4
1,683,325	+		MPMX19_01606	0.20	-1.9
1,683,325	+		MPMX19_01606	0.20	-0.2
1,683,325	+		MPMX19_01606	0.20	-0.2
1,683,325	+		MPMX19_01606	0.20	-0.9
1,683,325	+		MPMX19_01606	0.20	-0.1
1,683,326	-		MPMX19_01606	0.20	-0.1
1,683,326	-		MPMX19_01606	0.20	-0.9
1,683,326	-		MPMX19_01606	0.20	+0.4
1,683,326	-		MPMX19_01606	0.20	+1.8
1,683,326	-		MPMX19_01606	0.20	-1.0
1,683,326	-		MPMX19_01606	0.20	-2.1
1,683,326	-		MPMX19_01606	0.20	-1.8
1,683,326	-		MPMX19_01606	0.20	-0.8
1,683,326	-		MPMX19_01606	0.20	-0.2
1,683,326	-		MPMX19_01606	0.20	-1.5
1,683,326	-		MPMX19_01606	0.20	+0.3
1,683,326	-		MPMX19_01606	0.20	-1.2
1,683,526	+		MPMX19_01606	0.30	+0.5
1,683,526	+		MPMX19_01606	0.30	-0.6
1,683,526	+		MPMX19_01606	0.30	-0.7
1,683,527	-		MPMX19_01606	0.30	+1.5
1,683,527	-		MPMX19_01606	0.30	-1.3
1,683,527	-		MPMX19_01606	0.30	-0.6
1,683,527	-		MPMX19_01606	0.30	+0.2