Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01397

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
1,461,245	+		MPMX19_01395	0.50	+0.1
1,461,393	-		MPMX19_01395	0.71	+0.4
1,461,429	+		MPMX19_01395	0.76	+0.1
1,461,429	+		MPMX19_01395	0.76	-0.2
1,461,625	+				-0.0
1,461,625	+				-0.4
1,461,625	+				-0.9
1,461,625	+				-1.0
1,461,625	+				-1.0
1,461,625	+				-0.1
1,461,625	+				-0.4
1,461,625	+				-0.8
1,461,625	+				+0.3
1,461,625	+				-0.0
1,461,625	+				-0.0
1,461,625	+				-1.6
1,461,625	+				-0.3
1,461,626	-				-0.6
1,461,626	-				-0.2
1,461,626	-				+0.8
1,461,626	-				+1.2
1,461,626	-				+0.1
1,461,626	-				-0.6
1,461,626	-				-0.4
1,461,626	-				+0.1
1,461,626	-				-0.8
1,461,626	-				-0.4
1,461,626	-				-0.2
1,461,626	-				+1.0
1,461,626	-				+0.0
1,461,627	+				-2.6
1,461,627	+				+0.7
1,461,627	+				-0.3
1,461,627	+				-0.1
1,461,627	+				-1.0
1,461,627	+				-2.3
1,461,627	+				-2.5
1,461,627	+				+0.4
1,461,627	+				-0.0
1,461,627	+				+1.6
1,461,627	+				-0.2
1,461,627	+				-1.0
1,461,627	+				-1.2
1,461,627	+				-0.8
1,461,627	+				-0.4
1,461,627	+				+0.1
1,461,627	+				-1.0
1,461,627	+				-1.2
1,461,627	+				+0.2
1,461,627	+				-0.9
1,461,627	+				+0.6
1,461,627	+				-0.4
1,461,627	+				-0.6
1,461,627	+				-0.4
1,461,627	+				+0.1
1,461,627	+				+0.0
1,461,627	+				+0.2
1,461,627	+				-0.9
1,461,627	+				+0.5
1,461,627	+				-0.8
1,461,627	+				-1.6
1,461,627	+				-0.6
1,461,627	+				-0.1
1,461,627	+				-1.4
1,461,627	+				+0.4
1,461,627	+				+1.2
1,461,627	+				+0.3
1,461,627	+				+0.4
1,461,627	+				+0.4
1,461,627	+				+0.7
1,461,627	+				+0.4
1,461,627	+				+0.5
1,461,627	+				-0.6
1,461,627	+				-0.2
1,461,627	+				-0.5
1,461,627	+				+0.2
1,461,627	+				-0.1
1,461,627	+				+0.1
1,461,627	+				-1.0
1,461,627	+				+0.8
1,461,627	+				-1.2
1,461,627	+				+0.6
1,461,627	+				+0.7
1,461,627	+				+1.0
1,461,627	+				-1.2
1,461,627	+				+0.1
1,461,627	+				-0.0
1,461,627	+				-1.4
1,461,627	+				-1.8
1,461,627	+				-0.2
1,461,627	+				-0.9
1,461,627	+				+1.1
1,461,627	+				-0.0
1,461,627	+				-2.0
1,461,627	+				-0.9
1,461,628	-				-1.2
1,461,628	-				-0.1
1,461,628	-				-0.4
1,461,628	-				-1.8
1,461,628	-				-0.6
1,461,628	-				-0.2
1,461,628	-				-0.3
1,461,628	-				-0.6
1,461,628	-				-1.5
1,461,628	-				-0.0
1,461,628	-				+0.6
1,461,628	-				-0.6
1,461,628	-				+0.6
1,461,628	-				+0.6
1,461,628	-				+0.4
1,461,628	-				+1.2
1,461,628	-				-1.6
1,461,628	-				-0.3
1,461,628	-				-0.8
1,461,628	-				-0.1
1,461,628	-				-0.8
1,461,628	-				-0.2
1,461,628	-				-0.3
1,461,628	-				-0.1
1,461,628	-				-0.6
1,461,628	-				-0.8
1,461,628	-				+0.4
1,461,628	-				-0.6
1,461,628	-				+0.5
1,461,628	-				-0.1
1,461,628	-				-0.3
1,461,628	-				-0.8
1,461,628	-				-0.2
1,461,628	-				-1.2
1,461,628	-				-2.1
1,461,628	-				-2.2
1,461,711	+				+0.4
1,461,711	+				+0.1
1,461,711	+				-0.7
1,461,711	+				-0.0
1,461,711	+				-0.2
1,461,711	+				+1.6
1,461,712	-				-0.1
1,461,712	-				+0.5
1,461,712	-				+0.5
1,461,712	-				-1.7
1,461,712	-				-0.1
1,461,712	-				-0.4
1,461,991	-		MPMX19_01396	0.66	-0.4
1,462,160	-				-0.0
1,462,202	+				-0.0
1,462,202	+				-1.0
1,462,202	+				-0.7
1,462,202	+				-0.8
1,462,203	-				-1.3
1,462,226	+				+0.2
1,462,226	+				+0.6
1,462,227	-				+0.7
1,462,227	-				-0.2
1,462,227	-				-0.0
1,462,227	-				+0.5
1,462,227	-				-0.3
1,462,265	+		MPMX19_01397	0.11	+1.1
1,462,265	+		MPMX19_01397	0.11	-0.4
1,462,266	-		MPMX19_01397	0.11	+0.4
1,462,266	-		MPMX19_01397	0.11	+0.1
1,462,266	-		MPMX19_01397	0.11	+0.2
1,462,266	-		MPMX19_01397	0.11	-1.4
1,462,266	-		MPMX19_01397	0.11	-0.0
1,462,282	-		MPMX19_01397	0.14	-0.4
1,462,282	-		MPMX19_01397	0.14	+0.6
1,462,282	-		MPMX19_01397	0.14	+0.4
1,462,282	-		MPMX19_01397	0.14	-0.3
1,462,282	-		MPMX19_01397	0.14	-0.3
1,462,282	-		MPMX19_01397	0.14	+0.2
1,462,282	-		MPMX19_01397	0.14	-0.4
1,462,293	+		MPMX19_01397	0.15	-1.6
1,462,299	+		MPMX19_01397	0.16	-0.0
1,462,313	+		MPMX19_01397	0.18	-0.4
1,462,328	+		MPMX19_01397	0.20	+0.4
1,462,328	+		MPMX19_01397	0.20	-1.1
1,462,328	+		MPMX19_01397	0.20	-0.7
1,462,329	-		MPMX19_01397	0.20	-0.1
1,462,329	-		MPMX19_01397	0.20	+1.0
1,462,349	+		MPMX19_01397	0.23	-1.2
1,462,349	+		MPMX19_01397	0.23	+0.6
1,462,349	+		MPMX19_01397	0.23	-0.2
1,462,350	-		MPMX19_01397	0.23	+1.3
1,462,350	-		MPMX19_01397	0.23	-0.7
1,462,403	+		MPMX19_01397	0.31	-0.2
1,462,404	-		MPMX19_01397	0.31	+0.7
1,462,410	+		MPMX19_01397	0.32	-0.3
1,462,469	+		MPMX19_01397	0.41	+1.0
1,462,472	-		MPMX19_01397	0.41	+0.2
1,462,472	-		MPMX19_01397	0.41	+1.3
1,462,475	+		MPMX19_01397	0.42	-1.6
1,462,476	-		MPMX19_01397	0.42	-0.4
1,462,476	-		MPMX19_01397	0.42	+0.2
1,462,488	-		MPMX19_01397	0.44	+0.2
1,462,488	-		MPMX19_01397	0.44	-1.6
1,462,537	+		MPMX19_01397	0.51	+1.6
1,462,537	+		MPMX19_01397	0.51	+0.8
1,462,537	+		MPMX19_01397	0.51	-0.3
1,462,537	+		MPMX19_01397	0.51	+2.6
1,462,537	+		MPMX19_01397	0.51	-0.3
1,462,537	+		MPMX19_01397	0.51	+0.4
1,462,538	-		MPMX19_01397	0.51	+0.5
1,462,564	+		MPMX19_01397	0.55	-0.9
1,462,564	+		MPMX19_01397	0.55	-0.2
1,462,565	-		MPMX19_01397	0.55	+0.6
1,462,593	-		MPMX19_01397	0.59	+0.1
1,462,599	+		MPMX19_01397	0.60	-0.2
1,462,599	+		MPMX19_01397	0.60	-0.8
1,462,599	+		MPMX19_01397	0.60	+0.1
1,462,599	+		MPMX19_01397	0.60	+1.6
1,462,599	+		MPMX19_01397	0.60	-1.0
1,462,600	-		MPMX19_01397	0.60	-0.3
1,462,600	-		MPMX19_01397	0.60	+0.6
1,462,600	-		MPMX19_01397	0.60	-0.3
1,462,600	-		MPMX19_01397	0.60	+1.4
1,462,600	-		MPMX19_01397	0.60	+0.2
1,462,600	-		MPMX19_01397	0.60	-0.1
1,462,626	+		MPMX19_01397	0.64	-0.3
1,462,627	-		MPMX19_01397	0.64	+0.9
1,462,627	-		MPMX19_01397	0.64	+0.2
1,462,731	+		MPMX19_01397	0.79	-0.2
1,462,731	+		MPMX19_01397	0.79	-0.6
1,462,731	+		MPMX19_01397	0.79	-0.3
1,462,731	+		MPMX19_01397	0.79	-0.2
1,462,731	+		MPMX19_01397	0.79	+0.6
1,462,732	-		MPMX19_01397	0.79	-0.8
1,462,732	-		MPMX19_01397	0.79	-0.9
1,462,732	-		MPMX19_01397	0.79	-0.8
1,462,732	-		MPMX19_01397	0.79	+1.3
1,462,732	-		MPMX19_01397	0.79	-1.4
1,462,732	-		MPMX19_01397	0.79	+0.2
1,462,769	+		MPMX19_01397	0.84	+0.4
1,462,769	+		MPMX19_01397	0.84	-0.3
1,462,788	+		MPMX19_01397	0.87	-0.3
1,462,788	+		MPMX19_01397	0.87	+0.1
1,462,788	+		MPMX19_01397	0.87	-1.0
1,462,789	-		MPMX19_01397	0.87	-0.7
1,462,789	-		MPMX19_01397	0.87	-0.0
1,462,863	+				-1.1
1,462,865	+				+1.6
1,462,866	-				-1.3
1,462,866	-				+0.6
1,462,899	-				-0.5
1,462,920	+				+1.6
1,462,920	+				+0.1
1,462,977	+				-0.8
1,462,977	+				-0.2
1,462,978	-				-1.4
1,462,978	-				-0.6
1,462,978	-				-0.2
1,462,983	+				-0.2
1,462,983	+				-0.0
1,462,984	-				-0.1
1,462,984	-				+0.6
1,462,984	-				+0.6
1,462,984	-				+1.9
1,463,013	+				-0.8
1,463,014	-				-0.6
1,463,014	-				+0.9
1,463,014	-				-1.1
1,463,014	-				-1.6
1,463,107	+		MPMX19_01398	0.15	-0.4
1,463,115	+		MPMX19_01398	0.15	-1.1
1,463,115	+		MPMX19_01398	0.15	-0.1
1,463,115	+		MPMX19_01398	0.15	-1.4
1,463,115	+		MPMX19_01398	0.15	-0.2
1,463,115	+		MPMX19_01398	0.15	+2.0
1,463,115	+		MPMX19_01398	0.15	+1.3
1,463,115	+		MPMX19_01398	0.15	-0.2
1,463,116	-		MPMX19_01398	0.16	-0.4
1,463,373	+		MPMX19_01398	0.45	+0.6
1,463,373	+		MPMX19_01398	0.45	-0.0
1,463,374	-		MPMX19_01398	0.46	+0.1
1,463,401	+		MPMX19_01398	0.49	-0.0
1,463,413	+		MPMX19_01398	0.50	+0.5
1,463,413	+		MPMX19_01398	0.50	-0.4
1,463,414	-		MPMX19_01398	0.50	-0.2
1,463,449	+		MPMX19_01398	0.54	+2.1
1,463,449	+		MPMX19_01398	0.54	+0.4
1,463,449	+		MPMX19_01398	0.54	-0.0
1,463,449	+		MPMX19_01398	0.54	+1.0
1,463,449	+		MPMX19_01398	0.54	-2.0
1,463,450	-		MPMX19_01398	0.54	-1.0
1,463,450	-		MPMX19_01398	0.54	-0.0
1,463,450	-		MPMX19_01398	0.54	-1.2
1,463,544	+		MPMX19_01398	0.65	-1.1
1,463,544	+		MPMX19_01398	0.65	-1.2
1,463,544	+		MPMX19_01398	0.65	-0.0
1,463,544	+		MPMX19_01398	0.65	-3.1
1,463,545	-		MPMX19_01398	0.65	-1.0
1,463,545	-		MPMX19_01398	0.65	-2.2
1,463,557	+		MPMX19_01398	0.67	-1.0
1,463,557	-		MPMX19_01398	0.67	+0.8
1,463,558	-		MPMX19_01398	0.67	-0.7
1,463,558	-		MPMX19_01398	0.67	-1.2
1,463,558	-		MPMX19_01398	0.67	-0.9
1,463,558	-		MPMX19_01398	0.67	-1.9
1,463,558	-		MPMX19_01398	0.67	+0.1
1,463,558	-		MPMX19_01398	0.67	-1.1
1,463,609	+		MPMX19_01398	0.73	+0.8
1,463,609	+		MPMX19_01398	0.73	+0.4
1,463,609	+		MPMX19_01398	0.73	+1.0
1,463,610	-		MPMX19_01398	0.73	-0.1
1,463,610	-		MPMX19_01398	0.73	-0.5
1,463,635	+		MPMX19_01398	0.76	+0.6
1,463,635	+		MPMX19_01398	0.76	-1.8
1,463,635	+		MPMX19_01398	0.76	+0.6
1,463,635	+		MPMX19_01398	0.76	-0.6
1,463,636	-		MPMX19_01398	0.76	-0.4
1,463,649	+		MPMX19_01398	0.77	+0.2
1,463,649	+		MPMX19_01398	0.77	-1.0
1,463,650	-		MPMX19_01398	0.78	+1.3
1,463,650	-		MPMX19_01398	0.78	-0.6
1,463,650	-		MPMX19_01398	0.78	+0.3
1,463,650	-		MPMX19_01398	0.78	-0.1
1,463,667	+		MPMX19_01398	0.80	+0.2
1,463,667	+		MPMX19_01398	0.80	-1.3
1,463,667	+		MPMX19_01398	0.80	-0.4
1,463,667	+		MPMX19_01398	0.80	-0.0
1,463,667	+		MPMX19_01398	0.80	-0.4
1,463,667	+		MPMX19_01398	0.80	+1.1
1,463,667	+		MPMX19_01398	0.80	+0.8
1,463,667	+		MPMX19_01398	0.80	-0.4
1,463,667	+		MPMX19_01398	0.80	-1.4
1,463,667	+		MPMX19_01398	0.80	-0.6
1,463,667	+		MPMX19_01398	0.80	-0.9
1,463,667	+		MPMX19_01398	0.80	-0.8
1,463,667	+		MPMX19_01398	0.80	-0.6
1,463,668	-		MPMX19_01398	0.80	-0.8
1,463,668	-		MPMX19_01398	0.80	-0.2
1,463,668	-		MPMX19_01398	0.80	+1.1
1,463,668	-		MPMX19_01398	0.80	-0.3
1,463,668	-		MPMX19_01398	0.80	-0.5
1,463,668	-		MPMX19_01398	0.80	-1.3
1,463,668	-		MPMX19_01398	0.80	-1.4
1,463,668	-		MPMX19_01398	0.80	+0.4
1,463,668	-		MPMX19_01398	0.80	-0.0
1,463,668	-		MPMX19_01398	0.80	+1.0
1,463,668	-		MPMX19_01398	0.80	-0.9
1,463,668	-		MPMX19_01398	0.80	+0.8