Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01025

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01023 and MPMX19_01024 overlap by 4 nucleotidesMPMX19_01024 and MPMX19_01025 are separated by 4 nucleotidesMPMX19_01025 and MPMX19_01026 are separated by 31 nucleotides MPMX19_01023: MPMX19_01023 - Bifunctional adenosylcobalamin biosynthesis protein CobP, at 1,061,237 to 1,061,776 _01023 MPMX19_01024: MPMX19_01024 - Corrinoid adenosyltransferase, at 1,061,773 to 1,062,396 _01024 MPMX19_01025: MPMX19_01025 - Cobyric acid synthase, at 1,062,401 to 1,063,879 _01025 MPMX19_01026: MPMX19_01026 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 1,063,911 to 1,064,888 _01026 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -1 0 1at 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1061.772 kb on + strandat 1062.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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1,061,772 + -0.0
1,061,772 + +0.5
1,061,772 + +0.4
1,061,772 + -0.3
1,061,772 + -1.7
1,061,772 + +0.3
1,061,772 + -0.9
1,061,772 + +0.5
1,061,772 + +0.2
1,061,772 + -0.3
1,061,772 + +0.2
1,061,772 + +0.2
1,061,772 + -1.3
1,061,772 + +0.3
1,062,417 + -1.2

Or see this region's nucleotide sequence