Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00831 and MPMX19_00832 are separated by 37 nucleotides MPMX19_00832 and MPMX19_00833 are separated by 304 nucleotides
MPMX19_00831: MPMX19_00831 - GMP synthase [glutamine-hydrolyzing], at 862,138 to 863,706
_00831
MPMX19_00832: MPMX19_00832 - hypothetical protein, at 863,744 to 864,322
_00832
MPMX19_00833: MPMX19_00833 - Lipopolysaccharide export system permease protein LptG, at 864,627 to 865,721
_00833
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 863.803 kb on - strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.878 kb on - strand, within MPMX19_00832 at 863.878 kb on - strand, within MPMX19_00832 at 863.878 kb on - strand, within MPMX19_00832 at 863.985 kb on + strand, within MPMX19_00832 at 864.003 kb on - strand, within MPMX19_00832 at 864.009 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.417 kb on + strand at 864.417 kb on + strand at 864.417 kb on + strand at 864.417 kb on + strand at 864.417 kb on + strand at 864.418 kb on - strand at 864.418 kb on - strand at 864.418 kb on - strand at 864.418 kb on - strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.630 kb on + strand at 864.630 kb on + strand at 864.630 kb on + strand at 864.630 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 863,803 - MPMX19_00832 0.10 -1.3 863,877 + MPMX19_00832 0.23 -1.3 863,877 + MPMX19_00832 0.23 -0.8 863,877 + MPMX19_00832 0.23 -0.5 863,877 + MPMX19_00832 0.23 -1.2 863,878 - MPMX19_00832 0.23 -1.1 863,878 - MPMX19_00832 0.23 -1.3 863,878 - MPMX19_00832 0.23 -0.6 863,985 + MPMX19_00832 0.42 -0.5 864,003 - MPMX19_00832 0.45 -0.6 864,009 + MPMX19_00832 0.46 +0.8 864,231 + MPMX19_00832 0.84 -1.0 864,231 + MPMX19_00832 0.84 +0.4 864,231 + MPMX19_00832 0.84 -0.4 864,231 + MPMX19_00832 0.84 -1.9 864,232 - MPMX19_00832 0.84 -1.1 864,232 - MPMX19_00832 0.84 -0.8 864,232 - MPMX19_00832 0.84 +1.1 864,232 - MPMX19_00832 0.84 -2.1 864,232 - MPMX19_00832 0.84 -0.3 864,232 - MPMX19_00832 0.84 -0.3 864,417 + +0.3 864,417 + +0.7 864,417 + -1.5 864,417 + +0.2 864,417 + +0.2 864,418 - +0.5 864,418 - +0.1 864,418 - +0.7 864,418 - +0.5 864,508 + -0.2 864,508 + -0.9 864,508 + +1.8 864,508 + -0.6 864,508 + +0.4 864,630 + +0.3 864,630 + -0.5 864,630 + +0.1 864,630 + -0.8
Or see this region's nucleotide sequence