Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00803 and MPMX19_00804 are separated by 293 nucleotides MPMX19_00804 and MPMX19_00805 overlap by 1 nucleotides
MPMX19_00803: MPMX19_00803 - hypothetical protein, at 823,895 to 825,967
_00803
MPMX19_00804: MPMX19_00804 - Glutamate-pyruvate aminotransferase AlaC, at 826,261 to 827,535
_00804
MPMX19_00805: MPMX19_00805 - Homoserine dehydrogenase, at 827,535 to 828,839
_00805
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.291 kb on + strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.292 kb on - strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.504 kb on + strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.505 kb on - strand, within MPMX19_00803 at 825.970 kb on + strand at 825.970 kb on + strand at 825.970 kb on + strand at 825.970 kb on + strand at 825.970 kb on + strand at 825.970 kb on + strand at 825.971 kb on - strand at 825.971 kb on - strand at 825.971 kb on - strand at 825.971 kb on - strand at 825.971 kb on - strand at 826.027 kb on + strand at 826.027 kb on + strand at 826.027 kb on + strand at 826.027 kb on + strand at 826.027 kb on + strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.028 kb on - strand at 826.036 kb on + strand at 826.036 kb on + strand at 826.036 kb on + strand at 826.036 kb on + strand at 826.037 kb on - strand at 826.037 kb on - strand at 826.037 kb on - strand at 826.037 kb on - strand at 826.037 kb on - strand at 826.037 kb on - strand at 826.055 kb on + strand at 826.055 kb on + strand at 826.055 kb on + strand at 826.055 kb on + strand at 826.056 kb on - strand at 826.056 kb on - strand at 826.056 kb on - strand at 826.056 kb on - strand at 826.088 kb on + strand at 826.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 825,291 + MPMX19_00803 0.67 -0.0 825,291 + MPMX19_00803 0.67 -0.1 825,291 + MPMX19_00803 0.67 -1.5 825,291 + MPMX19_00803 0.67 -0.2 825,291 + MPMX19_00803 0.67 -0.7 825,291 + MPMX19_00803 0.67 -1.3 825,291 + MPMX19_00803 0.67 -0.7 825,291 + MPMX19_00803 0.67 +0.2 825,291 + MPMX19_00803 0.67 -0.2 825,291 + MPMX19_00803 0.67 -0.4 825,291 + MPMX19_00803 0.67 -1.3 825,292 - MPMX19_00803 0.67 +0.3 825,292 - MPMX19_00803 0.67 +0.4 825,292 - MPMX19_00803 0.67 -0.2 825,292 - MPMX19_00803 0.67 -0.7 825,292 - MPMX19_00803 0.67 -1.1 825,292 - MPMX19_00803 0.67 -0.6 825,292 - MPMX19_00803 0.67 +0.9 825,292 - MPMX19_00803 0.67 -0.5 825,292 - MPMX19_00803 0.67 -0.3 825,292 - MPMX19_00803 0.67 -0.3 825,292 - MPMX19_00803 0.67 -0.4 825,292 - MPMX19_00803 0.67 -0.0 825,292 - MPMX19_00803 0.67 -0.5 825,292 - MPMX19_00803 0.67 +0.3 825,292 - MPMX19_00803 0.67 -0.4 825,292 - MPMX19_00803 0.67 -1.4 825,504 + MPMX19_00803 0.78 +0.1 825,504 + MPMX19_00803 0.78 -0.9 825,504 + MPMX19_00803 0.78 +0.1 825,504 + MPMX19_00803 0.78 -0.4 825,504 + MPMX19_00803 0.78 -2.3 825,504 + MPMX19_00803 0.78 -2.2 825,504 + MPMX19_00803 0.78 -0.9 825,504 + MPMX19_00803 0.78 +0.7 825,504 + MPMX19_00803 0.78 +1.7 825,504 + MPMX19_00803 0.78 -2.0 825,504 + MPMX19_00803 0.78 -0.6 825,505 - MPMX19_00803 0.78 +0.6 825,505 - MPMX19_00803 0.78 -0.8 825,505 - MPMX19_00803 0.78 -1.8 825,505 - MPMX19_00803 0.78 -0.1 825,505 - MPMX19_00803 0.78 -1.3 825,505 - MPMX19_00803 0.78 -0.7 825,505 - MPMX19_00803 0.78 -1.5 825,505 - MPMX19_00803 0.78 +0.2 825,505 - MPMX19_00803 0.78 +0.1 825,970 + -0.1 825,970 + +0.5 825,970 + -0.5 825,970 + -0.2 825,970 + -0.2 825,970 + -0.1 825,971 - -1.2 825,971 - -0.2 825,971 - +0.9 825,971 - +0.6 825,971 - -1.6 826,027 + -0.3 826,027 + -0.5 826,027 + -0.5 826,027 + +0.7 826,027 + -0.4 826,028 - +0.4 826,028 - -0.7 826,028 - -1.7 826,028 - -1.1 826,028 - -0.5 826,028 - +0.1 826,028 - -0.5 826,028 - -0.9 826,028 - -0.4 826,036 + -0.4 826,036 + +1.0 826,036 + -0.3 826,036 + +0.8 826,037 - -0.1 826,037 - +0.3 826,037 - -0.2 826,037 - +1.1 826,037 - +0.8 826,037 - -0.2 826,055 + +0.1 826,055 + -0.9 826,055 + -1.2 826,055 + -0.7 826,056 - +0.0 826,056 - -1.3 826,056 - -0.8 826,056 - +0.6 826,088 + +0.9 826,089 - -1.5
Or see this region's nucleotide sequence