Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00793 and MPMX19_00794 are separated by 84 nucleotides MPMX19_00794 and MPMX19_00795 are separated by 25 nucleotides MPMX19_00795 and MPMX19_00796 are separated by 240 nucleotides
MPMX19_00793: MPMX19_00793 - hypothetical protein, at 812,750 to 814,354
_00793
MPMX19_00794: MPMX19_00794 - Transcriptional activator protein CopR, at 814,439 to 815,125
_00794
MPMX19_00795: MPMX19_00795 - Adaptive-response sensory-kinase SasA, at 815,151 to 816,584
_00795
MPMX19_00796: MPMX19_00796 - hypothetical protein, at 816,825 to 817,913
_00796
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.461 kb on + strand at 814.461 kb on + strand at 814.461 kb on + strand at 814.462 kb on - strand at 814.462 kb on - strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.488 kb on - strand at 814.488 kb on - strand at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.736 kb on + strand, within MPMX19_00794 at 814.736 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.988 kb on + strand, within MPMX19_00794 at 814.988 kb on + strand, within MPMX19_00794 at 815.123 kb on + strand at 815.123 kb on + strand at 815.123 kb on + strand at 815.123 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.247 kb on + strand at 815.247 kb on + strand at 815.247 kb on + strand at 815.248 kb on - strand at 815.248 kb on - strand at 815.248 kb on - strand at 815.295 kb on + strand, within MPMX19_00795 at 815.373 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.553 kb on + strand, within MPMX19_00795 at 815.554 kb on - strand, within MPMX19_00795 at 816.172 kb on - strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.634 kb on + strand at 816.634 kb on + strand at 816.634 kb on + strand at 816.635 kb on - strand at 816.635 kb on - strand at 816.635 kb on - strand at 816.635 kb on - strand at 816.677 kb on + strand at 816.677 kb on + strand at 816.678 kb on - strand at 816.678 kb on - strand at 816.678 kb on - strand at 816.718 kb on + strand at 816.719 kb on - strand at 816.719 kb on - strand at 816.732 kb on + strand at 816.732 kb on + strand at 816.733 kb on - strand at 816.733 kb on - strand at 816.852 kb on + strand at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 814,432 + +1.5 814,432 + -0.8 814,432 + -0.5 814,432 + -2.3 814,432 + -1.1 814,432 + +0.4 814,432 + +0.0 814,432 + -0.7 814,432 + -0.3 814,432 + -0.1 814,432 + -0.8 814,432 + -0.6 814,432 + +0.0 814,432 + +0.9 814,432 + +0.0 814,432 + +1.5 814,432 + +0.3 814,432 + -0.5 814,433 - -0.5 814,433 - +0.0 814,433 - +0.3 814,433 - -1.8 814,461 + -0.1 814,461 + -1.5 814,461 + +0.3 814,462 - -0.8 814,462 - -0.8 814,487 + -1.1 814,487 + -0.7 814,487 + -0.7 814,487 + +0.3 814,487 + -0.5 814,488 - -1.8 814,488 - +0.4 814,577 + MPMX19_00794 0.20 -1.6 814,577 + MPMX19_00794 0.20 -0.2 814,577 + MPMX19_00794 0.20 -0.8 814,577 + MPMX19_00794 0.20 -1.1 814,577 + MPMX19_00794 0.20 -0.3 814,577 + MPMX19_00794 0.20 -0.7 814,578 - MPMX19_00794 0.20 -1.5 814,578 - MPMX19_00794 0.20 -1.3 814,578 - MPMX19_00794 0.20 -0.9 814,736 + MPMX19_00794 0.43 -1.7 814,736 + MPMX19_00794 0.43 -1.8 814,925 + MPMX19_00794 0.71 -0.5 814,925 + MPMX19_00794 0.71 -0.3 814,925 + MPMX19_00794 0.71 -0.8 814,988 + MPMX19_00794 0.80 -1.3 814,988 + MPMX19_00794 0.80 -0.5 815,123 + -0.4 815,123 + -0.2 815,123 + -0.3 815,123 + +0.8 815,150 + +0.5 815,150 + -0.7 815,150 + -0.2 815,150 + -1.0 815,150 + +0.1 815,150 + -1.1 815,150 + +1.2 815,150 + +0.1 815,150 + +0.5 815,150 + +0.0 815,150 + -0.9 815,150 + -1.7 815,150 + +0.8 815,150 + +0.5 815,150 + +0.3 815,150 + -0.8 815,150 + -0.4 815,150 + +1.2 815,150 + -0.4 815,150 + -0.1 815,150 + -1.2 815,150 + -1.1 815,150 + -1.4 815,151 - -0.1 815,151 - -1.3 815,151 - +0.7 815,151 - -1.2 815,151 - +0.5 815,151 - -0.6 815,151 - -0.8 815,151 - -0.2 815,151 - -1.3 815,247 + +0.5 815,247 + +0.1 815,247 + -2.2 815,248 - +0.1 815,248 - +1.3 815,248 - -0.3 815,295 + MPMX19_00795 0.10 -1.6 815,373 + MPMX19_00795 0.15 -1.5 815,382 + MPMX19_00795 0.16 -0.1 815,382 + MPMX19_00795 0.16 -1.5 815,382 + MPMX19_00795 0.16 -0.2 815,448 + MPMX19_00795 0.21 -2.7 815,448 + MPMX19_00795 0.21 -1.1 815,448 + MPMX19_00795 0.21 +0.1 815,448 + MPMX19_00795 0.21 -0.8 815,449 - MPMX19_00795 0.21 +0.5 815,449 - MPMX19_00795 0.21 +0.5 815,449 - MPMX19_00795 0.21 -1.5 815,449 - MPMX19_00795 0.21 -0.5 815,449 - MPMX19_00795 0.21 -0.5 815,449 - MPMX19_00795 0.21 -0.1 815,553 + MPMX19_00795 0.28 -0.7 815,554 - MPMX19_00795 0.28 -2.5 816,172 - MPMX19_00795 0.71 -1.7 816,297 + MPMX19_00795 0.80 +0.1 816,297 + MPMX19_00795 0.80 -0.4 816,297 + MPMX19_00795 0.80 -0.4 816,297 + MPMX19_00795 0.80 -0.7 816,298 - MPMX19_00795 0.80 -0.6 816,298 - MPMX19_00795 0.80 +1.2 816,298 - MPMX19_00795 0.80 -0.3 816,298 - MPMX19_00795 0.80 -0.1 816,634 + -0.7 816,634 + -0.8 816,634 + -2.2 816,635 - +1.2 816,635 - +0.0 816,635 - -0.7 816,635 - +0.7 816,677 + -1.4 816,677 + +0.2 816,678 - +0.0 816,678 - -1.6 816,678 - -1.8 816,718 + +0.1 816,719 - -1.1 816,719 - -0.9 816,732 + -1.1 816,732 + -1.7 816,733 - -0.5 816,733 - -1.7 816,852 + -0.3 817,059 + MPMX19_00796 0.21 -0.6 817,059 + MPMX19_00796 0.21 -0.6 817,059 + MPMX19_00796 0.21 -1.2 817,059 + MPMX19_00796 0.21 -0.8 817,059 + MPMX19_00796 0.21 -0.8 817,059 + MPMX19_00796 0.21 -0.1 817,060 - MPMX19_00796 0.22 -0.7 817,060 - MPMX19_00796 0.22 -0.8 817,060 - MPMX19_00796 0.22 -1.1 817,060 - MPMX19_00796 0.22 -1.2 817,060 - MPMX19_00796 0.22 -0.1 817,308 + MPMX19_00796 0.44 -0.5 817,308 + MPMX19_00796 0.44 -1.1 817,308 + MPMX19_00796 0.44 +0.0 817,308 + MPMX19_00796 0.44 +0.3 817,308 + MPMX19_00796 0.44 +0.4 817,308 + MPMX19_00796 0.44 -0.8 817,308 + MPMX19_00796 0.44 +0.1 817,308 + MPMX19_00796 0.44 -0.8 817,308 + MPMX19_00796 0.44 -0.1 817,308 + MPMX19_00796 0.44 +0.4 817,308 + MPMX19_00796 0.44 +0.6 817,308 + MPMX19_00796 0.44 -0.2 817,309 - MPMX19_00796 0.44 -0.3 817,309 - MPMX19_00796 0.44 -0.5 817,309 - MPMX19_00796 0.44 -0.9 817,309 - MPMX19_00796 0.44 +1.2 817,309 - MPMX19_00796 0.44 -0.9 817,309 - MPMX19_00796 0.44 -0.4 817,309 - MPMX19_00796 0.44 -1.1 817,309 - MPMX19_00796 0.44 +1.2 817,309 - MPMX19_00796 0.44 +0.4 817,309 - MPMX19_00796 0.44 +0.3 817,309 - MPMX19_00796 0.44 -0.9 817,309 - MPMX19_00796 0.44 -0.8 817,350 + MPMX19_00796 0.48 -1.5 817,350 + MPMX19_00796 0.48 -0.3 817,350 + MPMX19_00796 0.48 +0.5 817,350 + MPMX19_00796 0.48 -0.4 817,350 + MPMX19_00796 0.48 -0.4 817,350 + MPMX19_00796 0.48 +0.1 817,350 + MPMX19_00796 0.48 +0.1 817,351 - MPMX19_00796 0.48 +0.1 817,351 - MPMX19_00796 0.48 -1.9 817,351 - MPMX19_00796 0.48 +0.9 817,351 - MPMX19_00796 0.48 +0.3 817,351 - MPMX19_00796 0.48 -0.1 817,351 - MPMX19_00796 0.48 -0.3 817,351 - MPMX19_00796 0.48 -1.2 817,351 - MPMX19_00796 0.48 -2.4 817,374 + MPMX19_00796 0.50 -1.6 817,374 + MPMX19_00796 0.50 +0.0 817,374 + MPMX19_00796 0.50 -0.2 817,375 - MPMX19_00796 0.51 +0.5 817,375 - MPMX19_00796 0.51 -1.0 817,375 - MPMX19_00796 0.51 -0.6 817,375 - MPMX19_00796 0.51 -0.1
Or see this region's nucleotide sequence