Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00516

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00515 and MPMX19_00516 are separated by 14 nucleotidesMPMX19_00516 and MPMX19_00517 are separated by 111 nucleotides MPMX19_00515: MPMX19_00515 - hypothetical protein, at 521,552 to 523,021 _00515 MPMX19_00516: MPMX19_00516 - Acetate kinase, at 523,036 to 524,220 _00516 MPMX19_00517: MPMX19_00517 - HTH-type transcriptional activator AmpR, at 524,332 to 525,222 _00517 Position (kb) 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1at 522.291 kb on - strand, within MPMX19_00515at 522.485 kb on + strand, within MPMX19_00515at 522.486 kb on - strand, within MPMX19_00515at 522.486 kb on - strand, within MPMX19_00515at 522.486 kb on - strand, within MPMX19_00515at 522.486 kb on - strand, within MPMX19_00515at 522.527 kb on + strand, within MPMX19_00515at 522.527 kb on + strand, within MPMX19_00515at 522.527 kb on + strand, within MPMX19_00515at 522.527 kb on + strand, within MPMX19_00515at 522.527 kb on + strand, within MPMX19_00515at 522.527 kb on + strand, within MPMX19_00515at 522.527 kb on + strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 522.528 kb on - strand, within MPMX19_00515at 523.019 kb on + strandat 523.019 kb on + strandat 523.019 kb on + strandat 523.019 kb on + strandat 523.019 kb on + strandat 523.020 kb on - strandat 523.020 kb on - strandat 523.020 kb on - strandat 523.020 kb on - strandat 523.020 kb on - strandat 523.255 kb on + strand, within MPMX19_00516at 523.255 kb on + strand, within MPMX19_00516at 523.255 kb on + strand, within MPMX19_00516at 523.255 kb on + strand, within MPMX19_00516at 523.255 kb on + strand, within MPMX19_00516at 523.255 kb on + strand, within MPMX19_00516at 523.255 kb on + strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.256 kb on - strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.591 kb on + strand, within MPMX19_00516at 523.592 kb on - strand, within MPMX19_00516at 523.592 kb on - strand, within MPMX19_00516at 523.592 kb on - strand, within MPMX19_00516at 523.592 kb on - strand, within MPMX19_00516at 523.592 kb on - strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.597 kb on + strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.598 kb on - strand, within MPMX19_00516at 523.792 kb on + strand, within MPMX19_00516at 523.792 kb on + strand, within MPMX19_00516at 523.792 kb on + strand, within MPMX19_00516at 523.792 kb on + strand, within MPMX19_00516at 523.792 kb on + strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.793 kb on - strand, within MPMX19_00516at 523.840 kb on + strand, within MPMX19_00516at 523.840 kb on + strand, within MPMX19_00516at 523.840 kb on + strand, within MPMX19_00516at 523.840 kb on + strand, within MPMX19_00516at 523.840 kb on + strand, within MPMX19_00516at 523.840 kb on + strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 523.841 kb on - strand, within MPMX19_00516at 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.152 kb on + strandat 524.153 kb on - strandat 524.153 kb on - strandat 524.153 kb on - strandat 524.153 kb on - strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.292 kb on + strandat 524.293 kb on - strandat 524.293 kb on - strandat 524.293 kb on - strandat 524.293 kb on - strandat 524.293 kb on - strandat 524.344 kb on + strandat 524.344 kb on + strandat 524.344 kb on + strandat 524.344 kb on + strandat 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.758 kb on + strand, within MPMX19_00517at 524.759 kb on - strand, within MPMX19_00517at 524.759 kb on - strand, within MPMX19_00517at 524.905 kb on + strand, within MPMX19_00517at 524.906 kb on - strand, within MPMX19_00517at 525.124 kb on + strand, within MPMX19_00517at 525.124 kb on + strand, within MPMX19_00517at 525.124 kb on + strand, within MPMX19_00517at 525.125 kb on - strand, within MPMX19_00517at 525.125 kb on - strand, within MPMX19_00517at 525.125 kb on - strand, within MPMX19_00517at 525.125 kb on - strand, within MPMX19_00517

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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522,291 - MPMX19_00515 0.50 -0.6
522,485 + MPMX19_00515 0.63 -1.1
522,486 - MPMX19_00515 0.64 +1.2
522,486 - MPMX19_00515 0.64 -1.6
522,486 - MPMX19_00515 0.64 -1.4
522,486 - MPMX19_00515 0.64 -0.8
522,527 + MPMX19_00515 0.66 +0.2
522,527 + MPMX19_00515 0.66 +0.7
522,527 + MPMX19_00515 0.66 -0.7
522,527 + MPMX19_00515 0.66 +0.2
522,527 + MPMX19_00515 0.66 +0.2
522,527 + MPMX19_00515 0.66 -1.2
522,527 + MPMX19_00515 0.66 +0.1
522,528 - MPMX19_00515 0.66 +1.0
522,528 - MPMX19_00515 0.66 -0.1
522,528 - MPMX19_00515 0.66 -0.3
522,528 - MPMX19_00515 0.66 -0.8
522,528 - MPMX19_00515 0.66 +1.2
522,528 - MPMX19_00515 0.66 -2.1
522,528 - MPMX19_00515 0.66 -1.3
522,528 - MPMX19_00515 0.66 -0.3
523,019 + -1.1
523,019 + -0.7
523,019 + -0.8
523,019 + -0.7
523,019 + -0.5
523,020 - -0.5
523,020 - +0.5
523,020 - -1.3
523,020 - +0.1
523,020 - -0.6
523,255 + MPMX19_00516 0.18 +0.3
523,255 + MPMX19_00516 0.18 -1.3
523,255 + MPMX19_00516 0.18 -1.0
523,255 + MPMX19_00516 0.18 +1.1
523,255 + MPMX19_00516 0.18 -0.8
523,255 + MPMX19_00516 0.18 -0.4
523,255 + MPMX19_00516 0.18 -0.4
523,256 - MPMX19_00516 0.19 -0.5
523,256 - MPMX19_00516 0.19 -1.3
523,256 - MPMX19_00516 0.19 -0.8
523,256 - MPMX19_00516 0.19 +0.3
523,256 - MPMX19_00516 0.19 +0.2
523,256 - MPMX19_00516 0.19 -1.7
523,256 - MPMX19_00516 0.19 +0.7
523,256 - MPMX19_00516 0.19 +0.6
523,256 - MPMX19_00516 0.19 -1.2
523,591 + MPMX19_00516 0.47 -1.0
523,591 + MPMX19_00516 0.47 -0.9
523,591 + MPMX19_00516 0.47 -0.2
523,591 + MPMX19_00516 0.47 -0.3
523,591 + MPMX19_00516 0.47 -0.8
523,591 + MPMX19_00516 0.47 +0.1
523,591 + MPMX19_00516 0.47 -2.3
523,591 + MPMX19_00516 0.47 -0.2
523,592 - MPMX19_00516 0.47 -0.4
523,592 - MPMX19_00516 0.47 +0.1
523,592 - MPMX19_00516 0.47 +0.6
523,592 - MPMX19_00516 0.47 +0.1
523,592 - MPMX19_00516 0.47 -1.0
523,597 + MPMX19_00516 0.47 -0.1
523,597 + MPMX19_00516 0.47 -1.1
523,597 + MPMX19_00516 0.47 +0.1
523,597 + MPMX19_00516 0.47 -0.4
523,597 + MPMX19_00516 0.47 -0.5
523,597 + MPMX19_00516 0.47 -0.5
523,597 + MPMX19_00516 0.47 +0.2
523,597 + MPMX19_00516 0.47 +0.4
523,597 + MPMX19_00516 0.47 -0.5
523,597 + MPMX19_00516 0.47 -0.8
523,597 + MPMX19_00516 0.47 -0.7
523,597 + MPMX19_00516 0.47 -0.6
523,597 + MPMX19_00516 0.47 -0.6
523,597 + MPMX19_00516 0.47 -0.6
523,597 + MPMX19_00516 0.47 -0.3
523,597 + MPMX19_00516 0.47 -0.6
523,598 - MPMX19_00516 0.47 -0.2
523,598 - MPMX19_00516 0.47 -1.2
523,598 - MPMX19_00516 0.47 +0.3
523,598 - MPMX19_00516 0.47 -0.9
523,598 - MPMX19_00516 0.47 +0.4
523,598 - MPMX19_00516 0.47 -1.8
523,598 - MPMX19_00516 0.47 -0.1
523,598 - MPMX19_00516 0.47 +0.3
523,598 - MPMX19_00516 0.47 -0.3
523,598 - MPMX19_00516 0.47 +1.0
523,598 - MPMX19_00516 0.47 -0.3
523,598 - MPMX19_00516 0.47 -0.5
523,598 - MPMX19_00516 0.47 -0.1
523,598 - MPMX19_00516 0.47 +0.6
523,598 - MPMX19_00516 0.47 -1.4
523,598 - MPMX19_00516 0.47 -0.3
523,598 - MPMX19_00516 0.47 -1.1
523,598 - MPMX19_00516 0.47 -0.4
523,598 - MPMX19_00516 0.47 -0.0
523,598 - MPMX19_00516 0.47 -0.8
523,598 - MPMX19_00516 0.47 -1.8
523,598 - MPMX19_00516 0.47 -0.5
523,792 + MPMX19_00516 0.64 +0.2
523,792 + MPMX19_00516 0.64 -0.7
523,792 + MPMX19_00516 0.64 -1.4
523,792 + MPMX19_00516 0.64 -3.3
523,792 + MPMX19_00516 0.64 -1.4
523,793 - MPMX19_00516 0.64 -0.6
523,793 - MPMX19_00516 0.64 -0.1
523,793 - MPMX19_00516 0.64 -1.8
523,793 - MPMX19_00516 0.64 -1.1
523,793 - MPMX19_00516 0.64 -1.2
523,793 - MPMX19_00516 0.64 -0.3
523,793 - MPMX19_00516 0.64 +0.3
523,793 - MPMX19_00516 0.64 +1.1
523,793 - MPMX19_00516 0.64 -0.7
523,793 - MPMX19_00516 0.64 +0.3
523,793 - MPMX19_00516 0.64 -0.8
523,793 - MPMX19_00516 0.64 +0.1
523,793 - MPMX19_00516 0.64 -1.2
523,793 - MPMX19_00516 0.64 -0.8
523,793 - MPMX19_00516 0.64 -0.8
523,793 - MPMX19_00516 0.64 -0.3
523,793 - MPMX19_00516 0.64 -0.8
523,840 + MPMX19_00516 0.68 -0.5
523,840 + MPMX19_00516 0.68 +0.0
523,840 + MPMX19_00516 0.68 -1.0
523,840 + MPMX19_00516 0.68 +0.1
523,840 + MPMX19_00516 0.68 -2.8
523,840 + MPMX19_00516 0.68 -0.3
523,841 - MPMX19_00516 0.68 +0.2
523,841 - MPMX19_00516 0.68 +0.2
523,841 - MPMX19_00516 0.68 +1.2
523,841 - MPMX19_00516 0.68 -1.3
523,841 - MPMX19_00516 0.68 +0.4
523,841 - MPMX19_00516 0.68 -1.7
523,841 - MPMX19_00516 0.68 -0.6
523,841 - MPMX19_00516 0.68 -0.6
523,841 - MPMX19_00516 0.68 -0.1
523,841 - MPMX19_00516 0.68 -0.7
523,841 - MPMX19_00516 0.68 -1.1
523,841 - MPMX19_00516 0.68 -0.4
523,841 - MPMX19_00516 0.68 +0.1
523,841 - MPMX19_00516 0.68 -0.1
523,841 - MPMX19_00516 0.68 -0.9
523,841 - MPMX19_00516 0.68 +0.3
524,152 + -1.7
524,152 + -1.6
524,152 + -1.0
524,152 + -0.1
524,152 + -0.5
524,152 + -1.1
524,152 + -0.4
524,152 + +0.8
524,152 + -1.5
524,152 + -1.2
524,152 + -1.5
524,152 + -0.6
524,152 + -0.9
524,152 + +0.5
524,152 + -2.5
524,152 + -0.7
524,152 + -0.4
524,152 + -0.5
524,153 - -1.1
524,153 - -1.1
524,153 - -0.6
524,153 - -2.6
524,292 + +0.3
524,292 + -0.6
524,292 + +0.1
524,292 + -1.3
524,292 + -0.5
524,292 + -0.3
524,292 + +0.1
524,292 + -1.0
524,292 + -1.5
524,292 + -0.5
524,292 + +0.8
524,292 + -0.6
524,293 - -0.3
524,293 - +0.1
524,293 - +0.7
524,293 - -1.2
524,293 - -0.4
524,344 + -1.0
524,344 + +0.4
524,344 + -0.7
524,344 + -0.0
524,758 + MPMX19_00517 0.48 -1.1
524,758 + MPMX19_00517 0.48 -0.3
524,758 + MPMX19_00517 0.48 -0.3
524,758 + MPMX19_00517 0.48 -0.8
524,758 + MPMX19_00517 0.48 -1.0
524,758 + MPMX19_00517 0.48 -0.3
524,758 + MPMX19_00517 0.48 +0.0
524,758 + MPMX19_00517 0.48 -1.7
524,758 + MPMX19_00517 0.48 +0.7
524,759 - MPMX19_00517 0.48 +0.6
524,759 - MPMX19_00517 0.48 +0.1
524,905 + MPMX19_00517 0.64 -0.4
524,906 - MPMX19_00517 0.64 -0.0
525,124 + MPMX19_00517 0.89 -0.0
525,124 + MPMX19_00517 0.89 -0.6
525,124 + MPMX19_00517 0.89 +0.1
525,125 - MPMX19_00517 0.89 -0.5
525,125 - MPMX19_00517 0.89 -1.0
525,125 - MPMX19_00517 0.89 -2.0
525,125 - MPMX19_00517 0.89 -0.2

Or see this region's nucleotide sequence