Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00477 and MPMX19_00478 are separated by 86 nucleotides MPMX19_00478 and MPMX19_00479 are separated by 162 nucleotides MPMX19_00479 and MPMX19_00480 are separated by 433 nucleotides
MPMX19_00477: MPMX19_00477 - Glutaredoxin 4, at 475,346 to 475,681
_00477
MPMX19_00478: MPMX19_00478 - putative protein RP812, at 475,768 to 476,007
_00478
MPMX19_00479: MPMX19_00479 - Adenylosuccinate lyase, at 476,170 to 477,465
_00479
MPMX19_00480: MPMX19_00480 - hypothetical protein, at 477,899 to 481,171
_00480
Position (kb) 476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.911 kb on - strand, within MPMX19_00478 at 475.911 kb on - strand, within MPMX19_00478 at 476.057 kb on - strand at 476.057 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.172 kb on - strand at 476.172 kb on - strand at 476.172 kb on - strand at 477.537 kb on - strand at 477.537 kb on - strand at 477.537 kb on - strand at 477.537 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.654 kb on + strand at 477.654 kb on + strand at 477.670 kb on + strand at 477.670 kb on + strand at 477.670 kb on + strand at 477.670 kb on + strand at 477.962 kb on + strand at 477.962 kb on + strand at 477.962 kb on + strand at 477.963 kb on - strand at 477.963 kb on - strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.140 kb on - strand at 478.140 kb on - strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.325 kb on + strand, within MPMX19_00480 at 478.325 kb on + strand, within MPMX19_00480 at 478.325 kb on + strand, within MPMX19_00480 at 478.325 kb on + strand, within MPMX19_00480 at 478.326 kb on - strand, within MPMX19_00480 at 478.326 kb on - strand, within MPMX19_00480 at 478.326 kb on - strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 475,845 - MPMX19_00478 0.32 +0.1 475,845 - MPMX19_00478 0.32 -0.5 475,845 - MPMX19_00478 0.32 -0.1 475,845 - MPMX19_00478 0.32 -0.5 475,845 - MPMX19_00478 0.32 -0.1 475,911 - MPMX19_00478 0.60 -2.2 475,911 - MPMX19_00478 0.60 -2.0 476,057 - +1.0 476,057 - +0.2 476,065 - -0.9 476,065 - -0.9 476,065 - +0.0 476,065 - -1.3 476,065 - +0.0 476,065 - -1.3 476,065 - -0.8 476,065 - -1.3 476,065 - -2.9 476,065 - -0.8 476,065 - -0.8 476,065 - -0.1 476,065 - -0.5 476,065 - +0.1 476,065 - -1.3 476,065 - -1.0 476,070 - -0.0 476,070 - +0.3 476,070 - +0.7 476,070 - -0.6 476,070 - +0.3 476,070 - +1.3 476,070 - -1.1 476,070 - -0.0 476,070 - +0.6 476,070 - -0.3 476,070 - +0.6 476,070 - -0.7 476,070 - -0.3 476,070 - -0.2 476,070 - -1.3 476,070 - -0.9 476,070 - -2.0 476,070 - -1.3 476,070 - -0.8 476,172 - -1.1 476,172 - +0.0 476,172 - +0.9 477,537 - -1.0 477,537 - +0.3 477,537 - +0.1 477,537 - -0.7 477,558 - +0.2 477,558 - +0.3 477,558 - -0.9 477,558 - +1.5 477,558 - -0.8 477,625 + +1.0 477,625 + +0.3 477,625 + -1.8 477,625 + +0.8 477,625 + +1.5 477,626 - -0.5 477,626 - -0.8 477,626 - -0.1 477,626 - -1.3 477,626 - +0.7 477,626 - +0.0 477,626 - +0.1 477,626 - -0.6 477,626 - -0.6 477,626 - -2.2 477,654 + +0.7 477,654 + -0.3 477,670 + -1.1 477,670 + -0.4 477,670 + -0.4 477,670 + -0.1 477,962 + -0.5 477,962 + -0.1 477,962 + +1.0 477,963 - +0.6 477,963 - +0.1 478,025 + -0.9 478,025 + -1.0 478,025 + -0.4 478,025 + +0.6 478,025 + -2.3 478,025 + -0.8 478,025 + +0.5 478,025 + -0.3 478,025 + -1.8 478,025 + -1.5 478,025 + -0.3 478,025 + -0.1 478,025 + -1.1 478,025 + +0.2 478,025 + -0.0 478,025 + -0.7 478,026 - -0.2 478,026 - -2.4 478,026 - +0.5 478,026 - -0.1 478,026 - -0.3 478,026 - +0.2 478,026 - +1.1 478,026 - -0.1 478,026 - -1.0 478,026 - -0.3 478,026 - -0.0 478,026 - -0.4 478,085 + +1.2 478,085 + -0.7 478,085 + -2.2 478,085 + +0.1 478,085 + -1.7 478,085 + -1.5 478,085 + -0.7 478,085 + +1.2 478,086 - +0.3 478,086 - +0.2 478,086 - +0.1 478,086 - +0.2 478,086 - -0.2 478,086 - -1.2 478,086 - -1.3 478,086 - +0.2 478,086 - +0.4 478,139 + -2.3 478,139 + -1.7 478,139 + -0.7 478,139 + -1.5 478,139 + -0.8 478,139 + -1.4 478,139 + -1.1 478,140 - +0.5 478,140 - -0.8 478,148 + -0.7 478,148 + -0.1 478,148 + +0.5 478,148 + -1.7 478,148 + +0.0 478,148 + -0.3 478,148 + -0.3 478,148 + -1.0 478,148 + +0.8 478,148 + +3.1 478,148 + -1.4 478,148 + -2.3 478,149 - -1.1 478,149 - -0.5 478,149 - +0.0 478,149 - -0.6 478,149 - +0.5 478,149 - -2.0 478,149 - +0.6 478,149 - -0.3 478,149 - -0.1 478,149 - -0.7 478,149 - -1.1 478,149 - +0.3 478,149 - -0.7 478,149 - -1.4 478,149 - -1.5 478,211 + +1.0 478,211 + -0.1 478,211 + +0.2 478,211 + -1.0 478,211 + -0.1 478,211 + -1.8 478,211 + +0.5 478,211 + -0.3 478,212 - -0.4 478,212 - -0.2 478,212 - -1.3 478,212 - -0.1 478,212 - -0.1 478,212 - +0.2 478,212 - -0.7 478,212 - +0.2 478,212 - +0.4 478,212 - -1.3 478,212 - +0.0 478,212 - -0.1 478,212 - -0.8 478,212 - -1.1 478,212 - +1.2 478,212 - -0.8 478,212 - -0.6 478,212 - -0.4 478,325 + MPMX19_00480 0.13 -0.5 478,325 + MPMX19_00480 0.13 +0.2 478,325 + MPMX19_00480 0.13 +0.6 478,325 + MPMX19_00480 0.13 +0.3 478,326 - MPMX19_00480 0.13 -0.7 478,326 - MPMX19_00480 0.13 -0.5 478,326 - MPMX19_00480 0.13 +1.0 478,328 + MPMX19_00480 0.13 +0.5 478,328 + MPMX19_00480 0.13 -1.1 478,328 + MPMX19_00480 0.13 -1.3 478,328 + MPMX19_00480 0.13 +0.7 478,328 + MPMX19_00480 0.13 +0.9 478,328 + MPMX19_00480 0.13 -0.1 478,328 + MPMX19_00480 0.13 -0.7 478,328 + MPMX19_00480 0.13 -0.7 478,328 + MPMX19_00480 0.13 -0.6 478,328 + MPMX19_00480 0.13 -0.2 478,328 + MPMX19_00480 0.13 -0.9 478,328 + MPMX19_00480 0.13 -1.6 478,328 + MPMX19_00480 0.13 -0.6 478,328 + MPMX19_00480 0.13 -0.5 478,328 + MPMX19_00480 0.13 +0.8 478,328 + MPMX19_00480 0.13 -1.2 478,328 + MPMX19_00480 0.13 -0.0 478,328 + MPMX19_00480 0.13 +0.1 478,328 + MPMX19_00480 0.13 -0.1 478,328 + MPMX19_00480 0.13 -0.9 478,328 + MPMX19_00480 0.13 -0.5 478,328 + MPMX19_00480 0.13 -0.8 478,328 + MPMX19_00480 0.13 -1.0 478,328 + MPMX19_00480 0.13 +0.1 478,328 + MPMX19_00480 0.13 -0.3 478,328 + MPMX19_00480 0.13 +0.2 478,328 + MPMX19_00480 0.13 -0.5 478,328 + MPMX19_00480 0.13 +0.5 478,329 - MPMX19_00480 0.13 -0.0 478,329 - MPMX19_00480 0.13 -0.7 478,329 - MPMX19_00480 0.13 -0.1 478,329 - MPMX19_00480 0.13 +0.1 478,329 - MPMX19_00480 0.13 +0.2 478,329 - MPMX19_00480 0.13 +1.1 478,329 - MPMX19_00480 0.13 -0.7 478,329 - MPMX19_00480 0.13 +0.5 478,329 - MPMX19_00480 0.13 +0.4 478,329 - MPMX19_00480 0.13 +0.3 478,329 - MPMX19_00480 0.13 +0.9 478,329 - MPMX19_00480 0.13 -0.6 478,329 - MPMX19_00480 0.13 +0.3 478,329 - MPMX19_00480 0.13 +0.5 478,329 - MPMX19_00480 0.13 -0.8 478,329 - MPMX19_00480 0.13 -0.6
Or see this region's nucleotide sequence