Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF984 and GFF985 are separated by 3 nucleotides GFF985 and GFF986 are separated by 4 nucleotides GFF986 and GFF987 are separated by 32 nucleotides
GFF984 - Peptide chain release factor RF2, at 215,427 to 216,341
GFF984
GFF985 - hypothetical protein, at 216,345 to 217,613
GFF985
GFF986 - hypothetical protein, at 217,618 to 218,277
GFF986
GFF987 - Chromosome partition protein Smc, at 218,310 to 221,087
GFF987
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.339 kb on + strand at 216.339 kb on + strand at 216.340 kb on - strand at 216.342 kb on + strand at 216.342 kb on + strand at 216.342 kb on + strand at 216.342 kb on + strand at 216.342 kb on + strand at 216.342 kb on + strand at 216.342 kb on + strand at 216.343 kb on - strand at 216.343 kb on - strand at 216.343 kb on - strand at 216.343 kb on - strand at 216.343 kb on - strand at 216.343 kb on - strand at 216.343 kb on - strand at 216.364 kb on + strand at 216.364 kb on + strand at 216.364 kb on + strand at 216.365 kb on - strand at 216.365 kb on - strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.399 kb on + strand at 216.400 kb on - strand at 216.400 kb on - strand at 216.400 kb on - strand at 216.400 kb on - strand at 216.410 kb on + strand at 216.585 kb on - strand, within GFF985 at 216.585 kb on - strand, within GFF985 at 216.585 kb on - strand, within GFF985 at 216.953 kb on + strand, within GFF985 at 216.954 kb on - strand, within GFF985 at 217.120 kb on + strand, within GFF985 at 217.227 kb on - strand, within GFF985 at 217.227 kb on - strand, within GFF985 at 217.265 kb on + strand, within GFF985 at 217.265 kb on + strand, within GFF985 at 217.266 kb on - strand, within GFF985 at 217.434 kb on + strand, within GFF985 at 217.510 kb on + strand at 217.543 kb on + strand at 217.543 kb on + strand at 217.582 kb on + strand at 217.582 kb on + strand at 217.582 kb on + strand at 217.583 kb on - strand at 217.583 kb on - strand at 217.583 kb on - strand at 217.583 kb on - strand at 217.586 kb on + strand at 217.586 kb on + strand at 217.586 kb on + strand at 217.587 kb on - strand at 217.592 kb on + strand at 217.593 kb on - strand at 217.593 kb on - strand at 217.593 kb on - strand at 217.670 kb on + strand at 217.670 kb on + strand at 217.860 kb on + strand, within GFF986 at 217.860 kb on + strand, within GFF986 at 217.861 kb on - strand, within GFF986 at 217.878 kb on + strand, within GFF986 at 217.878 kb on + strand, within GFF986 at 217.878 kb on + strand, within GFF986 at 217.878 kb on + strand, within GFF986 at 217.878 kb on + strand, within GFF986 at 217.879 kb on - strand, within GFF986 at 218.066 kb on + strand, within GFF986 at 218.082 kb on + strand, within GFF986 at 218.088 kb on + strand, within GFF986 at 218.136 kb on + strand, within GFF986 at 218.145 kb on + strand, within GFF986 at 218.145 kb on + strand, within GFF986 at 218.149 kb on + strand, within GFF986 at 218.182 kb on + strand, within GFF986 at 218.275 kb on + strand at 218.276 kb on - strand at 218.306 kb on + strand at 218.306 kb on + strand at 218.306 kb on + strand at 218.306 kb on + strand at 218.306 kb on + strand at 218.306 kb on + strand at 218.306 kb on + strand at 218.338 kb on + strand at 218.338 kb on + strand at 218.339 kb on - strand at 218.387 kb on + strand at 218.388 kb on - strand at 218.388 kb on - strand at 218.388 kb on - strand at 218.391 kb on - strand at 218.444 kb on + strand at 218.444 kb on + strand at 218.445 kb on - strand at 218.445 kb on - strand at 218.445 kb on - strand at 218.493 kb on + strand at 218.493 kb on + strand at 218.494 kb on - strand at 218.502 kb on + strand at 218.502 kb on + strand at 218.502 kb on + strand at 218.502 kb on + strand at 218.502 kb on + strand at 218.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 216,339 + +0.4 216,339 + -0.8 216,340 - -0.4 216,342 + -0.4 216,342 + -0.0 216,342 + -1.0 216,342 + -0.0 216,342 + -0.0 216,342 + -0.2 216,342 + +0.2 216,343 - -1.0 216,343 - -0.5 216,343 - -1.5 216,343 - -1.0 216,343 - -0.2 216,343 - -0.2 216,343 - -0.0 216,364 + -0.9 216,364 + -0.3 216,364 + -0.8 216,365 - +0.3 216,365 - -0.6 216,399 + +2.0 216,399 + -1.6 216,399 + +0.5 216,399 + -1.5 216,399 + -1.0 216,399 + -0.0 216,399 + -0.3 216,399 + -0.0 216,399 + -0.6 216,399 + +0.4 216,399 + +0.6 216,399 + +1.3 216,399 + +0.5 216,399 + -1.0 216,399 + +0.2 216,399 + -0.5 216,400 - -1.0 216,400 - -0.5 216,400 - -1.4 216,400 - +0.3 216,410 + -1.0 216,585 - GFF985 0.19 -0.0 216,585 - GFF985 0.19 -0.7 216,585 - GFF985 0.19 -1.6 216,953 + GFF985 0.48 -0.2 216,954 - GFF985 0.48 +0.2 217,120 + GFF985 0.61 -0.3 217,227 - GFF985 0.70 -0.0 217,227 - GFF985 0.70 -0.3 217,265 + GFF985 0.72 -0.0 217,265 + GFF985 0.72 +0.0 217,266 - GFF985 0.73 +0.6 217,434 + GFF985 0.86 -0.6 217,510 + +0.5 217,543 + +0.3 217,543 + -0.0 217,582 + +0.3 217,582 + -1.4 217,582 + -0.6 217,583 - -1.0 217,583 - +0.3 217,583 - -1.0 217,583 - -0.4 217,586 + -0.7 217,586 + -0.0 217,586 + -0.8 217,587 - -0.5 217,592 + -0.9 217,593 - -2.0 217,593 - -1.6 217,593 - -0.9 217,670 + +0.7 217,670 + -0.9 217,860 + GFF986 0.37 -1.6 217,860 + GFF986 0.37 -1.4 217,861 - GFF986 0.37 -0.3 217,878 + GFF986 0.39 -0.8 217,878 + GFF986 0.39 -1.0 217,878 + GFF986 0.39 -0.6 217,878 + GFF986 0.39 -0.8 217,878 + GFF986 0.39 -1.6 217,879 - GFF986 0.40 -2.0 218,066 + GFF986 0.68 -1.9 218,082 + GFF986 0.70 -1.4 218,088 + GFF986 0.71 -0.0 218,136 + GFF986 0.78 -0.5 218,145 + GFF986 0.80 -2.0 218,145 + GFF986 0.80 -0.5 218,149 + GFF986 0.80 -0.5 218,182 + GFF986 0.85 -0.5 218,275 + -0.4 218,276 - -0.3 218,306 + -2.4 218,306 + -1.0 218,306 + +1.3 218,306 + -1.1 218,306 + -0.4 218,306 + -3.0 218,306 + +1.3 218,338 + -1.0 218,338 + -0.8 218,339 - -0.9 218,387 + -0.5 218,388 - -1.4 218,388 - -0.7 218,388 - -0.8 218,391 - -0.9 218,444 + -1.4 218,444 + -1.4 218,445 - -0.6 218,445 - +0.3 218,445 - +0.7 218,493 + -0.4 218,493 + -0.5 218,494 - -0.0 218,502 + -1.2 218,502 + -0.9 218,502 + +0.6 218,502 + -0.3 218,502 + -1.8 218,503 - -2.5
Or see this region's nucleotide sequence