Strain Fitness in Methylophilus sp. DMC18 around GFF970

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF968 and GFF969 are separated by 9 nucleotidesGFF969 and GFF970 overlap by 1 nucleotidesGFF970 and GFF971 overlap by 4 nucleotidesGFF971 and GFF972 overlap by 1 nucleotides GFF968 - hypothetical protein, at 200,186 to 201,046 GFF968 GFF969 - hypothetical protein, at 201,056 to 201,997 GFF969 GFF970 - hypothetical protein, at 201,997 to 202,965 GFF970 GFF971 - hypothetical protein, at 202,962 to 203,498 GFF971 GFF972 - hypothetical protein, at 203,498 to 204,457 GFF972 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1at 201.037 kb on + strandat 201.037 kb on + strandat 201.037 kb on + strandat 201.038 kb on - strandat 201.038 kb on - strandat 201.212 kb on + strand, within GFF969at 201.212 kb on + strand, within GFF969at 201.212 kb on + strand, within GFF969at 201.212 kb on + strand, within GFF969at 201.334 kb on - strand, within GFF969at 201.380 kb on + strand, within GFF969at 201.380 kb on + strand, within GFF969at 201.380 kb on + strand, within GFF969at 201.381 kb on - strand, within GFF969at 201.381 kb on - strand, within GFF969at 201.383 kb on - strand, within GFF969at 201.383 kb on - strand, within GFF969at 201.383 kb on - strand, within GFF969at 201.435 kb on + strand, within GFF969at 201.435 kb on + strand, within GFF969at 201.435 kb on + strand, within GFF969at 201.435 kb on + strand, within GFF969at 201.547 kb on + strand, within GFF969at 201.548 kb on - strand, within GFF969at 201.595 kb on - strand, within GFF969at 201.600 kb on + strand, within GFF969at 201.601 kb on - strand, within GFF969at 201.643 kb on - strand, within GFF969at 201.643 kb on - strand, within GFF969at 201.651 kb on + strand, within GFF969at 201.653 kb on + strand, within GFF969at 201.826 kb on + strand, within GFF969at 201.826 kb on + strand, within GFF969at 201.826 kb on + strand, within GFF969at 201.826 kb on + strand, within GFF969at 201.826 kb on + strand, within GFF969at 201.827 kb on - strand, within GFF969at 201.827 kb on - strand, within GFF969at 201.827 kb on - strand, within GFF969at 201.827 kb on - strand, within GFF969at 201.860 kb on + strand, within GFF969at 201.860 kb on + strand, within GFF969at 201.860 kb on + strand, within GFF969at 201.860 kb on + strand, within GFF969at 201.861 kb on - strand, within GFF969at 201.884 kb on + strand, within GFF969at 201.939 kb on - strandat 201.939 kb on - strandat 201.976 kb on + strandat 201.976 kb on + strandat 201.977 kb on - strandat 201.977 kb on - strandat 202.081 kb on + strandat 202.081 kb on + strandat 202.082 kb on - strandat 202.133 kb on + strand, within GFF970at 202.134 kb on - strand, within GFF970at 202.134 kb on - strand, within GFF970at 202.134 kb on - strand, within GFF970at 202.164 kb on - strand, within GFF970at 202.178 kb on + strand, within GFF970at 202.356 kb on + strand, within GFF970at 202.356 kb on + strand, within GFF970at 202.399 kb on - strand, within GFF970at 202.414 kb on + strand, within GFF970at 202.414 kb on + strand, within GFF970at 202.414 kb on + strand, within GFF970at 202.415 kb on - strand, within GFF970at 202.415 kb on - strand, within GFF970at 202.415 kb on - strand, within GFF970at 202.415 kb on - strand, within GFF970at 202.446 kb on + strand, within GFF970at 202.446 kb on + strand, within GFF970at 202.512 kb on + strand, within GFF970at 202.512 kb on + strand, within GFF970at 202.612 kb on + strand, within GFF970at 202.654 kb on + strand, within GFF970at 202.709 kb on - strand, within GFF970at 202.774 kb on + strand, within GFF970at 202.774 kb on + strand, within GFF970at 202.774 kb on + strand, within GFF970at 202.774 kb on + strand, within GFF970at 202.775 kb on - strand, within GFF970at 202.775 kb on - strand, within GFF970at 202.907 kb on + strandat 202.908 kb on - strandat 202.949 kb on + strandat 202.949 kb on + strandat 202.950 kb on - strandat 202.955 kb on + strandat 202.957 kb on + strandat 202.957 kb on + strandat 202.957 kb on + strandat 202.958 kb on - strandat 202.988 kb on + strandat 202.988 kb on + strandat 202.988 kb on + strandat 202.989 kb on - strandat 203.050 kb on + strand, within GFF971at 203.099 kb on + strand, within GFF971at 203.119 kb on - strand, within GFF971at 203.119 kb on - strand, within GFF971at 203.143 kb on - strand, within GFF971at 203.167 kb on - strand, within GFF971at 203.168 kb on + strand, within GFF971at 203.169 kb on - strand, within GFF971at 203.169 kb on - strand, within GFF971at 203.224 kb on + strand, within GFF971at 203.224 kb on + strand, within GFF971at 203.224 kb on + strand, within GFF971at 203.224 kb on + strand, within GFF971at 203.225 kb on - strand, within GFF971at 203.225 kb on - strand, within GFF971at 203.225 kb on - strand, within GFF971at 203.278 kb on + strand, within GFF971at 203.278 kb on + strand, within GFF971at 203.279 kb on - strand, within GFF971at 203.330 kb on + strand, within GFF971at 203.349 kb on + strand, within GFF971at 203.349 kb on + strand, within GFF971at 203.350 kb on - strand, within GFF971at 203.463 kb on - strandat 203.474 kb on + strandat 203.475 kb on - strandat 203.475 kb on - strandat 203.479 kb on + strandat 203.480 kb on - strandat 203.491 kb on + strandat 203.491 kb on + strandat 203.517 kb on + strandat 203.528 kb on + strandat 203.528 kb on + strandat 203.528 kb on + strandat 203.528 kb on + strandat 203.528 kb on + strandat 203.528 kb on + strandat 203.529 kb on - strandat 203.529 kb on - strandat 203.618 kb on + strand, within GFF972at 203.618 kb on + strand, within GFF972at 203.619 kb on - strand, within GFF972at 203.619 kb on - strand, within GFF972at 203.699 kb on + strand, within GFF972at 203.699 kb on + strand, within GFF972at 203.700 kb on - strand, within GFF972at 203.712 kb on + strand, within GFF972at 203.712 kb on + strand, within GFF972at 203.712 kb on + strand, within GFF972at 203.713 kb on - strand, within GFF972at 203.713 kb on - strand, within GFF972at 203.750 kb on + strand, within GFF972at 203.750 kb on + strand, within GFF972at 203.750 kb on + strand, within GFF972at 203.750 kb on + strand, within GFF972at 203.750 kb on + strand, within GFF972at 203.751 kb on - strand, within GFF972at 203.755 kb on + strand, within GFF972at 203.779 kb on + strand, within GFF972at 203.780 kb on - strand, within GFF972at 203.811 kb on + strand, within GFF972at 203.811 kb on + strand, within GFF972at 203.834 kb on - strand, within GFF972at 203.921 kb on + strand, within GFF972at 203.921 kb on + strand, within GFF972at 203.921 kb on + strand, within GFF972at 203.921 kb on + strand, within GFF972at 203.921 kb on + strand, within GFF972at 203.921 kb on + strand, within GFF972at 203.921 kb on + strand, within GFF972at 203.922 kb on - strand, within GFF972at 203.922 kb on - strand, within GFF972

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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201,037 + -2.0
201,037 + -0.6
201,037 + -1.0
201,038 - -0.0
201,038 - -1.6
201,212 + GFF969 0.17 -0.2
201,212 + GFF969 0.17 -0.3
201,212 + GFF969 0.17 -1.0
201,212 + GFF969 0.17 -0.9
201,334 - GFF969 0.30 -0.6
201,380 + GFF969 0.34 +1.4
201,380 + GFF969 0.34 -0.8
201,380 + GFF969 0.34 -1.1
201,381 - GFF969 0.35 -0.1
201,381 - GFF969 0.35 -0.4
201,383 - GFF969 0.35 -0.4
201,383 - GFF969 0.35 -0.2
201,383 - GFF969 0.35 -2.1
201,435 + GFF969 0.40 -0.9
201,435 + GFF969 0.40 -0.3
201,435 + GFF969 0.40 -0.4
201,435 + GFF969 0.40 -1.5
201,547 + GFF969 0.52 -1.9
201,548 - GFF969 0.52 +0.4
201,595 - GFF969 0.57 +0.9
201,600 + GFF969 0.58 -1.1
201,601 - GFF969 0.58 -0.6
201,643 - GFF969 0.62 +0.2
201,643 - GFF969 0.62 -0.9
201,651 + GFF969 0.63 -0.5
201,653 + GFF969 0.63 -1.4
201,826 + GFF969 0.82 -1.6
201,826 + GFF969 0.82 -1.1
201,826 + GFF969 0.82 -0.9
201,826 + GFF969 0.82 +0.5
201,826 + GFF969 0.82 -2.6
201,827 - GFF969 0.82 -1.4
201,827 - GFF969 0.82 +0.9
201,827 - GFF969 0.82 -0.4
201,827 - GFF969 0.82 -0.8
201,860 + GFF969 0.85 -1.1
201,860 + GFF969 0.85 -0.2
201,860 + GFF969 0.85 -0.1
201,860 + GFF969 0.85 -0.9
201,861 - GFF969 0.85 -0.6
201,884 + GFF969 0.88 -0.2
201,939 - +0.4
201,939 - +0.3
201,976 + -0.9
201,976 + -0.5
201,977 - +0.5
201,977 - -0.1
202,081 + -1.1
202,081 + +0.1
202,082 - -2.2
202,133 + GFF970 0.14 -2.6
202,134 - GFF970 0.14 +0.9
202,134 - GFF970 0.14 -2.5
202,134 - GFF970 0.14 -1.0
202,164 - GFF970 0.17 -1.3
202,178 + GFF970 0.19 -0.2
202,356 + GFF970 0.37 -2.4
202,356 + GFF970 0.37 -0.1
202,399 - GFF970 0.41 +0.9
202,414 + GFF970 0.43 +0.4
202,414 + GFF970 0.43 -0.1
202,414 + GFF970 0.43 -1.2
202,415 - GFF970 0.43 +0.5
202,415 - GFF970 0.43 -1.1
202,415 - GFF970 0.43 -0.1
202,415 - GFF970 0.43 -1.6
202,446 + GFF970 0.46 -0.1
202,446 + GFF970 0.46 +0.1
202,512 + GFF970 0.53 -1.0
202,512 + GFF970 0.53 -0.3
202,612 + GFF970 0.63 -1.4
202,654 + GFF970 0.68 -0.6
202,709 - GFF970 0.73 -1.1
202,774 + GFF970 0.80 -1.2
202,774 + GFF970 0.80 +0.2
202,774 + GFF970 0.80 +0.5
202,774 + GFF970 0.80 +0.2
202,775 - GFF970 0.80 -1.2
202,775 - GFF970 0.80 +0.9
202,907 + -2.5
202,908 - -1.1
202,949 + -0.4
202,949 + +1.1
202,950 - -0.5
202,955 + -1.9
202,957 + -1.1
202,957 + -2.0
202,957 + -0.9
202,958 - -0.5
202,988 + -0.1
202,988 + -1.4
202,988 + -0.5
202,989 - -0.4
203,050 + GFF971 0.16 -0.1
203,099 + GFF971 0.26 -1.4
203,119 - GFF971 0.29 +0.2
203,119 - GFF971 0.29 -1.1
203,143 - GFF971 0.34 -0.6
203,167 - GFF971 0.38 -0.8
203,168 + GFF971 0.38 -1.2
203,169 - GFF971 0.39 -1.2
203,169 - GFF971 0.39 -1.4
203,224 + GFF971 0.49 +0.2
203,224 + GFF971 0.49 +0.5
203,224 + GFF971 0.49 -1.1
203,224 + GFF971 0.49 -1.1
203,225 - GFF971 0.49 -0.5
203,225 - GFF971 0.49 -1.1
203,225 - GFF971 0.49 -0.2
203,278 + GFF971 0.59 -1.5
203,278 + GFF971 0.59 -0.4
203,279 - GFF971 0.59 -1.1
203,330 + GFF971 0.69 -2.5
203,349 + GFF971 0.72 -0.2
203,349 + GFF971 0.72 -0.6
203,350 - GFF971 0.72 -0.6
203,463 - -0.8
203,474 + +0.4
203,475 - +0.3
203,475 - -1.9
203,479 + +0.4
203,480 - +0.6
203,491 + -1.4
203,491 + -1.5
203,517 + -1.1
203,528 + -1.2
203,528 + -1.6
203,528 + +0.4
203,528 + -0.9
203,528 + -1.6
203,528 + -0.5
203,529 - +0.5
203,529 - -1.1
203,618 + GFF972 0.12 +0.5
203,618 + GFF972 0.12 -1.1
203,619 - GFF972 0.13 +0.5
203,619 - GFF972 0.13 +0.2
203,699 + GFF972 0.21 -0.2
203,699 + GFF972 0.21 -0.6
203,700 - GFF972 0.21 -1.4
203,712 + GFF972 0.22 +0.1
203,712 + GFF972 0.22 -0.6
203,712 + GFF972 0.22 -0.5
203,713 - GFF972 0.22 +0.4
203,713 - GFF972 0.22 -0.9
203,750 + GFF972 0.26 -0.1
203,750 + GFF972 0.26 -0.3
203,750 + GFF972 0.26 -1.1
203,750 + GFF972 0.26 -1.4
203,750 + GFF972 0.26 -0.1
203,751 - GFF972 0.26 +0.6
203,755 + GFF972 0.27 -0.9
203,779 + GFF972 0.29 -1.6
203,780 - GFF972 0.29 -1.2
203,811 + GFF972 0.33 -0.2
203,811 + GFF972 0.33 -0.6
203,834 - GFF972 0.35 +0.5
203,921 + GFF972 0.44 +0.5
203,921 + GFF972 0.44 +0.8
203,921 + GFF972 0.44 -1.9
203,921 + GFF972 0.44 +0.2
203,921 + GFF972 0.44 -0.2
203,921 + GFF972 0.44 -0.4
203,921 + GFF972 0.44 -0.2
203,922 - GFF972 0.44 +0.5
203,922 - GFF972 0.44 +0.2

Or see this region's nucleotide sequence