Strain Fitness in Methylophilus sp. DMC18 around GFF896

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF895 and GFF896 are separated by 5 nucleotidesGFF896 and GFF897 are separated by 79 nucleotides GFF895 - Succinyl-diaminopimelate desuccinylase, at 131,636 to 132,781 GFF895 GFF896 - Protein YffB, at 132,787 to 133,140 GFF896 GFF897 - hypothetical protein, at 133,220 to 135,292 GFF897 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1at 132.789 kb on - strandat 132.789 kb on - strandat 132.825 kb on + strand, within GFF896at 132.922 kb on + strand, within GFF896at 132.922 kb on + strand, within GFF896at 132.922 kb on + strand, within GFF896at 132.922 kb on + strand, within GFF896at 132.922 kb on + strand, within GFF896at 132.922 kb on + strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.923 kb on - strand, within GFF896at 132.926 kb on - strand, within GFF896at 132.926 kb on - strand, within GFF896at 132.926 kb on - strand, within GFF896at 132.926 kb on - strand, within GFF896at 132.931 kb on - strand, within GFF896at 132.955 kb on - strand, within GFF896at 132.955 kb on - strand, within GFF896at 132.955 kb on - strand, within GFF896at 132.955 kb on - strand, within GFF896at 132.999 kb on - strand, within GFF896at 132.999 kb on - strand, within GFF896at 132.999 kb on - strand, within GFF896at 132.999 kb on - strand, within GFF896at 132.999 kb on - strand, within GFF896at 133.007 kb on - strand, within GFF896at 133.007 kb on - strand, within GFF896at 133.065 kb on - strand, within GFF896at 133.065 kb on - strand, within GFF896at 133.111 kb on - strandat 133.133 kb on - strandat 133.133 kb on - strandat 133.133 kb on - strandat 133.157 kb on - strandat 133.171 kb on - strandat 133.200 kb on - strandat 133.200 kb on - strandat 133.216 kb on - strandat 133.265 kb on + strandat 133.266 kb on - strandat 133.266 kb on - strandat 133.266 kb on - strandat 133.266 kb on - strandat 133.266 kb on - strandat 133.266 kb on - strandat 133.278 kb on + strandat 133.279 kb on - strandat 133.279 kb on - strandat 133.279 kb on - strandat 133.509 kb on - strand, within GFF897at 133.558 kb on + strand, within GFF897at 133.558 kb on + strand, within GFF897at 133.622 kb on - strand, within GFF897at 133.622 kb on - strand, within GFF897at 133.659 kb on - strand, within GFF897at 133.659 kb on - strand, within GFF897at 133.729 kb on + strand, within GFF897at 133.729 kb on + strand, within GFF897at 133.729 kb on + strand, within GFF897at 133.729 kb on + strand, within GFF897at 133.730 kb on - strand, within GFF897at 133.745 kb on + strand, within GFF897at 133.745 kb on + strand, within GFF897at 133.850 kb on - strand, within GFF897at 133.850 kb on - strand, within GFF897at 133.850 kb on - strand, within GFF897at 133.896 kb on - strand, within GFF897at 133.896 kb on - strand, within GFF897at 133.955 kb on + strand, within GFF897at 134.082 kb on + strand, within GFF897at 134.082 kb on + strand, within GFF897at 134.082 kb on + strand, within GFF897at 134.082 kb on + strand, within GFF897at 134.082 kb on + strand, within GFF897at 134.082 kb on + strand, within GFF897at 134.082 kb on + strand, within GFF897at 134.083 kb on - strand, within GFF897at 134.083 kb on - strand, within GFF897at 134.083 kb on - strand, within GFF897at 134.083 kb on - strand, within GFF897at 134.083 kb on - strand, within GFF897at 134.083 kb on - strand, within GFF897at 134.083 kb on - strand, within GFF897at 134.136 kb on + strand, within GFF897at 134.137 kb on - strand, within GFF897at 134.137 kb on - strand, within GFF897

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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132,789 - -0.1
132,789 - -0.1
132,825 + GFF896 0.11 -0.5
132,922 + GFF896 0.38 -0.1
132,922 + GFF896 0.38 -0.1
132,922 + GFF896 0.38 -0.4
132,922 + GFF896 0.38 -1.6
132,922 + GFF896 0.38 +0.5
132,922 + GFF896 0.38 +0.6
132,923 - GFF896 0.38 +0.1
132,923 - GFF896 0.38 -1.4
132,923 - GFF896 0.38 -1.4
132,923 - GFF896 0.38 -0.1
132,923 - GFF896 0.38 -1.2
132,923 - GFF896 0.38 -1.5
132,923 - GFF896 0.38 -1.9
132,923 - GFF896 0.38 -0.6
132,923 - GFF896 0.38 -0.1
132,926 - GFF896 0.39 +0.5
132,926 - GFF896 0.39 +0.7
132,926 - GFF896 0.39 -0.9
132,926 - GFF896 0.39 -0.4
132,931 - GFF896 0.41 +0.3
132,955 - GFF896 0.47 -0.6
132,955 - GFF896 0.47 -2.1
132,955 - GFF896 0.47 -2.9
132,955 - GFF896 0.47 +0.0
132,999 - GFF896 0.60 -0.6
132,999 - GFF896 0.60 -0.6
132,999 - GFF896 0.60 -0.3
132,999 - GFF896 0.60 -0.1
132,999 - GFF896 0.60 +0.1
133,007 - GFF896 0.62 +0.5
133,007 - GFF896 0.62 -0.8
133,065 - GFF896 0.79 -0.5
133,065 - GFF896 0.79 -1.5
133,111 - +0.5
133,133 - -1.3
133,133 - -0.1
133,133 - +0.5
133,157 - +0.9
133,171 - -0.1
133,200 - -0.6
133,200 - -0.5
133,216 - -1.9
133,265 + +0.8
133,266 - -0.2
133,266 - -0.4
133,266 - -0.4
133,266 - -0.1
133,266 - -1.2
133,266 - +0.0
133,278 + -0.1
133,279 - -0.9
133,279 - -1.0
133,279 - +0.1
133,509 - GFF897 0.14 -0.9
133,558 + GFF897 0.16 -1.1
133,558 + GFF897 0.16 -0.1
133,622 - GFF897 0.19 +0.1
133,622 - GFF897 0.19 -1.9
133,659 - GFF897 0.21 -1.4
133,659 - GFF897 0.21 -1.6
133,729 + GFF897 0.25 +1.3
133,729 + GFF897 0.25 +0.5
133,729 + GFF897 0.25 -0.6
133,729 + GFF897 0.25 +0.4
133,730 - GFF897 0.25 +0.7
133,745 + GFF897 0.25 -1.1
133,745 + GFF897 0.25 -1.9
133,850 - GFF897 0.30 +1.5
133,850 - GFF897 0.30 -1.6
133,850 - GFF897 0.30 +0.8
133,896 - GFF897 0.33 +0.1
133,896 - GFF897 0.33 -1.6
133,955 + GFF897 0.35 -0.9
134,082 + GFF897 0.42 -1.8
134,082 + GFF897 0.42 +1.2
134,082 + GFF897 0.42 +0.6
134,082 + GFF897 0.42 +0.1
134,082 + GFF897 0.42 -0.1
134,082 + GFF897 0.42 -0.1
134,082 + GFF897 0.42 -1.4
134,083 - GFF897 0.42 -0.8
134,083 - GFF897 0.42 +1.4
134,083 - GFF897 0.42 +0.7
134,083 - GFF897 0.42 +0.2
134,083 - GFF897 0.42 +0.9
134,083 - GFF897 0.42 -1.9
134,083 - GFF897 0.42 +0.5
134,136 + GFF897 0.44 +0.4
134,137 - GFF897 0.44 -0.6
134,137 - GFF897 0.44 -0.6

Or see this region's nucleotide sequence