Strain Fitness in Methylophilus sp. DMC18

Strain Fitness in Methylophilus sp. DMC18 around GFF890

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	D-Glucose (C)
				remove
125,848	+	GFF889	0.53	-1.2
125,848	+	GFF889	0.53	+0.2
125,852	+	GFF889	0.53	-1.4
125,852	+	GFF889	0.53	-2.6
125,852	+	GFF889	0.53	-0.9
125,853	-	GFF889	0.53	-1.1
125,896	-	GFF889	0.56	-1.9
126,432	+	GFF889	0.88	-0.9
126,570	+			-0.7
126,592	-			-0.2
126,672	-			-1.1
126,672	-			-1.4
126,672	-			-0.5
126,678	+			-0.9
126,678	+			-0.3
126,679	-			-1.2
126,679	-			-0.5
126,679	-			+0.2
126,683	+			-1.2
126,683	+			-0.3
126,683	+			-0.8
126,683	+			-1.5
126,684	-			+0.2
126,684	-			-2.5
126,684	-			-0.6
126,688	-			-0.6
126,688	-			-1.1
126,705	+			+0.6
126,706	-			+0.6
126,707	+			-1.5
126,707	+			+0.2
126,709	+			-0.9
126,709	+			-0.4
126,709	+			-1.1
126,731	+			+0.2
126,732	-			+0.3
126,744	+			-0.7
126,753	+			+0.8
126,753	+			-0.1
126,753	+			-0.6
126,753	+			+0.1
126,754	-			-1.1
126,754	-			-0.6
126,754	-			+0.2
126,774	-			-0.6
126,774	-			+0.0
126,774	-			-1.4
126,819	+			+0.4
126,819	+			-0.2
126,819	+			-2.1
126,820	-			-0.5
126,820	-			-1.2
126,820	-			-1.5
126,820	-			+0.7
126,820	-			+0.4
126,823	+			-0.1
126,838	+			-0.1
126,838	+			-0.4
126,839	-			-1.1
126,842	+			-0.4
126,842	+			+0.5
126,843	-			+0.5
126,843	-			+1.2
126,843	-			+1.8
126,843	-			-0.8
126,843	-			+0.9
126,880	-			+0.7
126,899	-			-1.7
126,899	-			+0.7
126,899	-			-1.2
126,915	+	GFF890	0.11	-0.1
126,915	+	GFF890	0.11	-0.7
126,915	+	GFF890	0.11	+0.3
126,915	+	GFF890	0.11	-0.5
126,915	+	GFF890	0.11	+0.0
126,949	+	GFF890	0.15	-0.1
126,949	+	GFF890	0.15	-0.2
126,949	+	GFF890	0.15	+0.4
126,949	+	GFF890	0.15	-1.4
126,950	-	GFF890	0.15	+0.9
126,950	-	GFF890	0.15	-1.1
126,950	-	GFF890	0.15	-1.9
126,951	+	GFF890	0.15	-1.1
126,951	+	GFF890	0.15	-1.9
126,951	+	GFF890	0.15	-0.5
126,951	+	GFF890	0.15	+1.2
126,990	+	GFF890	0.19	-1.4
126,990	+	GFF890	0.19	-0.8
126,990	+	GFF890	0.19	-0.1
126,991	-	GFF890	0.19	-0.3
127,086	-	GFF890	0.30	-0.6
127,103	+	GFF890	0.32	-0.8
127,124	+	GFF890	0.35	-1.2
127,129	+	GFF890	0.35	-0.3
127,130	-	GFF890	0.36	-1.6
127,130	-	GFF890	0.36	+0.5
127,148	+	GFF890	0.38	-2.5
127,148	+	GFF890	0.38	-0.1
127,149	-	GFF890	0.38	-0.8
127,149	-	GFF890	0.38	-1.6
127,235	+	GFF890	0.48	-0.1
127,236	-	GFF890	0.48	+0.2
127,236	-	GFF890	0.48	+0.2
127,236	-	GFF890	0.48	-1.9
127,236	-	GFF890	0.48	-0.4
127,236	-	GFF890	0.48	-0.6
127,272	+	GFF890	0.52	-0.6
127,272	+	GFF890	0.52	-1.2
127,272	+	GFF890	0.52	+0.2
127,272	+	GFF890	0.52	+1.5
127,272	+	GFF890	0.52	+0.1
127,273	-	GFF890	0.52	-0.9
127,274	+	GFF890	0.52	-0.5
127,278	-	GFF890	0.53	-1.5
127,278	-	GFF890	0.53	-0.2
127,295	+	GFF890	0.55	+0.9
127,295	+	GFF890	0.55	+0.5
127,295	+	GFF890	0.55	-1.4
127,323	+	GFF890	0.58	-2.0
127,323	+	GFF890	0.58	-0.9
127,323	+	GFF890	0.58	-2.0
127,323	+	GFF890	0.58	-0.9
127,324	-	GFF890	0.58	-1.4
127,324	-	GFF890	0.58	+0.9
127,324	-	GFF890	0.58	-0.1
127,324	-	GFF890	0.58	+0.9
127,358	+	GFF890	0.62	+0.1
127,403	+	GFF890	0.67	-1.2
127,404	-	GFF890	0.67	-0.1
127,404	-	GFF890	0.67	-1.1
127,404	-	GFF890	0.67	-1.1
127,448	+	GFF890	0.72	-2.1
127,448	+	GFF890	0.72	-0.3
127,448	+	GFF890	0.72	-0.5
127,448	+	GFF890	0.72	-0.5
127,449	-	GFF890	0.72	-0.1
127,509	+	GFF890	0.79	-0.8
127,510	-	GFF890	0.79	-1.6
127,510	-	GFF890	0.79	+0.2
127,513	+	GFF890	0.80	-1.1
127,513	+	GFF890	0.80	-0.1
127,513	+	GFF890	0.80	-0.1
127,513	+	GFF890	0.80	-1.1
127,514	-	GFF890	0.80	+0.5
127,514	-	GFF890	0.80	-0.1
127,526	+	GFF890	0.81	+0.9
127,526	+	GFF890	0.81	-0.5
127,526	+	GFF890	0.81	+0.2
127,527	-	GFF890	0.81	-0.9
127,527	-	GFF890	0.81	+0.4
127,529	+	GFF890	0.82	-1.1
127,537	+	GFF890	0.82	-0.2
127,537	+	GFF890	0.82	+0.9
127,537	+	GFF890	0.82	-0.1
127,537	+	GFF890	0.82	-0.7
127,538	-	GFF890	0.83	-0.1
127,538	-	GFF890	0.83	-0.7
127,538	-	GFF890	0.83	-1.1
127,538	-	GFF890	0.83	-0.3
127,538	-	GFF890	0.83	-1.1
127,583	+	GFF890	0.88	+0.8
127,613	+			-1.1
127,613	+			+0.5
127,613	+			+0.8
127,622	+			-0.4
127,622	+			-0.6
127,633	+			-1.4
127,634	-			-0.4
127,634	-			-0.4
127,715	+			+0.7
127,715	+			-0.5
127,715	+			-0.1
127,715	+			-0.1
127,716	-			+0.0
127,716	-			-2.0
127,716	-			-0.2
127,716	-			-2.2
127,716	-			-1.6
127,716	-			+0.5
127,721	+			-0.2
127,721	+			-0.5
127,721	+			+0.4
127,722	-			-1.8
127,722	-			-1.2
127,725	+			-1.1
127,725	+			+0.4
127,726	-			-0.4
127,734	+			-0.4
127,735	-			-0.5
127,763	-			-0.5
127,766	-			-3.1
127,774	+			-2.6
127,805	+			+1.1
127,805	+			+0.4
127,805	+			-1.6
127,806	-			+0.7
127,806	-			-0.6
127,806	-			+0.2
127,806	-			+0.2
127,806	-			-1.6
127,806	-			+0.1
127,830	-			-1.4
127,836	+			-0.1
127,843	+			-1.1
127,881	+			-1.9
127,881	+			-0.6
127,882	-			+0.1
127,912	+			-0.9
127,913	-			-3.0
127,917	-			+0.1
127,939	+			-1.2
127,940	-			-2.4
127,940	-			-0.6
127,994	-			-1.2
128,020	+			+0.1
128,020	+			-2.0
128,020	+			-0.9
128,020	+			-1.4
128,021	-			-0.9
128,021	-			-1.1
128,032	+			-0.5
128,033	-			-1.1
128,033	-			-1.1
128,047	+			-1.1
128,047	+			+0.4
128,047	+			-0.1
128,047	+			-0.4
128,047	+			+0.2
128,047	+			-1.1
128,048	-			+0.5
128,048	-			-0.8
128,054	+			-0.5
128,054	+			-0.4
128,054	+			-1.1
128,055	-			-1.3
128,055	-			-1.1
128,063	+			-0.1
128,063	+			-1.1
128,064	-			-1.9
128,067	+			-1.4
128,067	+			-0.6
128,067	+			-0.3
128,068	-			+0.5
128,068	-			+0.1
128,068	-			-1.0
128,076	-			-2.2
128,076	-			-0.1
128,114	+			+0.4
128,114	+			-0.5
128,115	-			-1.0
128,120	-			-1.4
128,120	-			-1.4
128,131	-			-0.1
128,139	+			-1.4
128,154	-			-1.4
128,244	+			+0.7
128,619	+	GFF891	0.39	-0.1
128,683	+	GFF891	0.45	-0.1
128,683	+	GFF891	0.45	-1.4

Or see this region's nucleotide sequence