Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_04398 and GEMAOFIL_04399 overlap by 4 nucleotides GEMAOFIL_04399 and GEMAOFIL_04400 are separated by 9 nucleotides GEMAOFIL_04400 and GEMAOFIL_04401 are separated by 84 nucleotides
GEMAOFIL_04398: GEMAOFIL_04398 - Peptidoglycan-associated lipoprotein, at 4,874,968 to 4,875,783
_04398
GEMAOFIL_04399: GEMAOFIL_04399 - hypothetical protein, at 4,875,780 to 4,876,142
_04399
GEMAOFIL_04400: GEMAOFIL_04400 - hypothetical protein, at 4,876,152 to 4,876,967
_04400
GEMAOFIL_04401: GEMAOFIL_04401 - Electron transfer flavoprotein subunit alpha, at 4,877,052 to 4,877,981
_04401
Position (kb) 4876
4877 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4875.533 kb on + strand, within GEMAOFIL_04398 at 4875.533 kb on + strand, within GEMAOFIL_04398 at 4875.534 kb on - strand, within GEMAOFIL_04398 at 4875.534 kb on - strand, within GEMAOFIL_04398 at 4875.539 kb on + strand, within GEMAOFIL_04398 at 4875.539 kb on + strand, within GEMAOFIL_04398 at 4875.539 kb on + strand, within GEMAOFIL_04398 at 4875.540 kb on - strand, within GEMAOFIL_04398 at 4875.934 kb on + strand, within GEMAOFIL_04399 at 4875.935 kb on - strand, within GEMAOFIL_04399 at 4875.935 kb on - strand, within GEMAOFIL_04399 at 4876.154 kb on - strand at 4876.321 kb on + strand, within GEMAOFIL_04400 at 4876.322 kb on - strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.423 kb on + strand, within GEMAOFIL_04400 at 4876.424 kb on - strand, within GEMAOFIL_04400 at 4876.583 kb on - strand, within GEMAOFIL_04400 at 4876.648 kb on + strand, within GEMAOFIL_04400 at 4876.648 kb on + strand, within GEMAOFIL_04400 at 4876.648 kb on + strand, within GEMAOFIL_04400 at 4876.649 kb on - strand, within GEMAOFIL_04400 at 4876.716 kb on + strand, within GEMAOFIL_04400 at 4876.717 kb on - strand, within GEMAOFIL_04400 at 4876.751 kb on - strand, within GEMAOFIL_04400 at 4876.751 kb on - strand, within GEMAOFIL_04400 at 4876.897 kb on - strand at 4877.034 kb on - strand at 4877.035 kb on + strand at 4877.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,875,533 + GEMAOFIL_04398 0.69 +0.2 4,875,533 + GEMAOFIL_04398 0.69 -0.2 4,875,534 - GEMAOFIL_04398 0.69 -0.6 4,875,534 - GEMAOFIL_04398 0.69 -0.3 4,875,539 + GEMAOFIL_04398 0.70 -0.3 4,875,539 + GEMAOFIL_04398 0.70 +0.1 4,875,539 + GEMAOFIL_04398 0.70 -1.4 4,875,540 - GEMAOFIL_04398 0.70 -0.5 4,875,934 + GEMAOFIL_04399 0.42 +0.7 4,875,935 - GEMAOFIL_04399 0.43 +1.7 4,875,935 - GEMAOFIL_04399 0.43 -0.2 4,876,154 - +0.0 4,876,321 + GEMAOFIL_04400 0.21 +0.2 4,876,322 - GEMAOFIL_04400 0.21 +0.6 4,876,423 + GEMAOFIL_04400 0.33 -0.7 4,876,423 + GEMAOFIL_04400 0.33 -0.1 4,876,423 + GEMAOFIL_04400 0.33 +0.4 4,876,423 + GEMAOFIL_04400 0.33 +0.2 4,876,424 - GEMAOFIL_04400 0.33 -1.3 4,876,583 - GEMAOFIL_04400 0.53 +0.3 4,876,648 + GEMAOFIL_04400 0.61 -0.1 4,876,648 + GEMAOFIL_04400 0.61 +1.0 4,876,648 + GEMAOFIL_04400 0.61 +1.9 4,876,649 - GEMAOFIL_04400 0.61 -1.8 4,876,716 + GEMAOFIL_04400 0.69 +0.1 4,876,717 - GEMAOFIL_04400 0.69 -0.4 4,876,751 - GEMAOFIL_04400 0.73 +0.1 4,876,751 - GEMAOFIL_04400 0.73 -0.6 4,876,897 - +0.2 4,877,034 - +1.2 4,877,035 + -0.7 4,877,036 - -0.1
Or see this region's nucleotide sequence