Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00475 and GEMAOFIL_00476 are separated by 23 nucleotides GEMAOFIL_00476 and GEMAOFIL_00477 are separated by 110 nucleotides GEMAOFIL_00477 and GEMAOFIL_00478 are separated by 207 nucleotides
GEMAOFIL_00475: GEMAOFIL_00475 - ATP-dependent RNA helicase RhlB, at 538,890 to 540,827
_00475
GEMAOFIL_00476: GEMAOFIL_00476 - hypothetical protein, at 540,851 to 541,282
_00476
GEMAOFIL_00477: GEMAOFIL_00477 - hypothetical protein, at 541,393 to 541,875
_00477
GEMAOFIL_00478: GEMAOFIL_00478 - Protein YdeP, at 542,083 to 544,431
_00478
Position (kb) 541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.400 kb on + strand, within GEMAOFIL_00475 at 540.402 kb on + strand, within GEMAOFIL_00475 at 540.402 kb on + strand, within GEMAOFIL_00475 at 540.402 kb on + strand, within GEMAOFIL_00475 at 540.403 kb on - strand, within GEMAOFIL_00475 at 540.638 kb on + strand at 540.734 kb on - strand at 540.775 kb on - strand at 540.780 kb on + strand at 540.826 kb on - strand at 540.848 kb on + strand at 540.848 kb on + strand at 540.848 kb on + strand at 540.848 kb on + strand at 540.849 kb on - strand at 540.849 kb on - strand at 540.849 kb on - strand at 540.849 kb on - strand at 540.881 kb on + strand at 540.905 kb on - strand, within GEMAOFIL_00476 at 540.929 kb on + strand, within GEMAOFIL_00476 at 540.930 kb on - strand, within GEMAOFIL_00476 at 540.930 kb on - strand, within GEMAOFIL_00476 at 540.953 kb on + strand, within GEMAOFIL_00476 at 540.953 kb on + strand, within GEMAOFIL_00476 at 540.953 kb on + strand, within GEMAOFIL_00476 at 540.953 kb on + strand, within GEMAOFIL_00476 at 540.957 kb on - strand, within GEMAOFIL_00476 at 540.982 kb on + strand, within GEMAOFIL_00476 at 540.982 kb on + strand, within GEMAOFIL_00476 at 540.982 kb on + strand, within GEMAOFIL_00476 at 540.982 kb on + strand, within GEMAOFIL_00476 at 540.983 kb on - strand, within GEMAOFIL_00476 at 540.983 kb on - strand, within GEMAOFIL_00476 at 540.983 kb on - strand, within GEMAOFIL_00476 at 540.986 kb on + strand, within GEMAOFIL_00476 at 540.986 kb on + strand, within GEMAOFIL_00476 at 541.061 kb on + strand, within GEMAOFIL_00476 at 541.062 kb on - strand, within GEMAOFIL_00476 at 541.139 kb on + strand, within GEMAOFIL_00476 at 541.140 kb on - strand, within GEMAOFIL_00476 at 541.140 kb on - strand, within GEMAOFIL_00476 at 541.281 kb on - strand at 541.314 kb on - strand at 541.364 kb on - strand at 541.388 kb on - strand at 541.464 kb on - strand, within GEMAOFIL_00477 at 541.532 kb on + strand, within GEMAOFIL_00477 at 541.532 kb on + strand, within GEMAOFIL_00477 at 541.532 kb on + strand, within GEMAOFIL_00477 at 541.533 kb on - strand, within GEMAOFIL_00477 at 541.768 kb on + strand, within GEMAOFIL_00477 at 541.792 kb on + strand, within GEMAOFIL_00477 at 541.882 kb on - strand at 541.936 kb on - strand at 541.936 kb on - strand at 542.161 kb on - strand at 542.161 kb on - strand at 542.214 kb on - strand at 542.217 kb on - strand at 542.217 kb on - strand at 542.242 kb on - strand at 542.260 kb on - strand at 542.260 kb on - strand at 542.368 kb on + strand, within GEMAOFIL_00478 at 542.369 kb on - strand, within GEMAOFIL_00478 at 542.369 kb on - strand, within GEMAOFIL_00478 at 542.414 kb on + strand, within GEMAOFIL_00478 at 542.415 kb on - strand, within GEMAOFIL_00478 at 542.430 kb on - strand, within GEMAOFIL_00478 at 542.581 kb on - strand, within GEMAOFIL_00478 at 542.729 kb on - strand, within GEMAOFIL_00478
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 540,400 + GEMAOFIL_00475 0.78 -0.7 540,402 + GEMAOFIL_00475 0.78 -0.8 540,402 + GEMAOFIL_00475 0.78 -0.1 540,402 + GEMAOFIL_00475 0.78 -0.7 540,403 - GEMAOFIL_00475 0.78 +0.0 540,638 + +0.1 540,734 - -0.1 540,775 - -1.0 540,780 + -0.4 540,826 - +0.3 540,848 + +1.0 540,848 + -0.3 540,848 + -0.3 540,848 + -0.7 540,849 - +0.5 540,849 - +0.1 540,849 - +0.1 540,849 - +2.0 540,881 + -0.2 540,905 - GEMAOFIL_00476 0.12 +1.3 540,929 + GEMAOFIL_00476 0.18 +0.4 540,930 - GEMAOFIL_00476 0.18 -1.6 540,930 - GEMAOFIL_00476 0.18 -0.5 540,953 + GEMAOFIL_00476 0.24 +0.9 540,953 + GEMAOFIL_00476 0.24 -0.1 540,953 + GEMAOFIL_00476 0.24 -0.7 540,953 + GEMAOFIL_00476 0.24 -0.1 540,957 - GEMAOFIL_00476 0.25 +0.1 540,982 + GEMAOFIL_00476 0.30 +0.0 540,982 + GEMAOFIL_00476 0.30 -1.0 540,982 + GEMAOFIL_00476 0.30 -2.0 540,982 + GEMAOFIL_00476 0.30 +0.4 540,983 - GEMAOFIL_00476 0.31 +0.0 540,983 - GEMAOFIL_00476 0.31 -0.5 540,983 - GEMAOFIL_00476 0.31 -0.2 540,986 + GEMAOFIL_00476 0.31 +0.5 540,986 + GEMAOFIL_00476 0.31 -0.0 541,061 + GEMAOFIL_00476 0.49 -0.1 541,062 - GEMAOFIL_00476 0.49 +0.5 541,139 + GEMAOFIL_00476 0.67 +0.7 541,140 - GEMAOFIL_00476 0.67 -0.6 541,140 - GEMAOFIL_00476 0.67 -1.7 541,281 - +0.8 541,314 - -0.4 541,364 - +1.1 541,388 - -0.3 541,464 - GEMAOFIL_00477 0.15 +0.0 541,532 + GEMAOFIL_00477 0.29 +0.9 541,532 + GEMAOFIL_00477 0.29 -0.6 541,532 + GEMAOFIL_00477 0.29 -0.4 541,533 - GEMAOFIL_00477 0.29 -0.1 541,768 + GEMAOFIL_00477 0.78 -0.8 541,792 + GEMAOFIL_00477 0.83 -0.4 541,882 - -0.3 541,936 - +0.3 541,936 - +0.2 542,161 - +0.4 542,161 - -0.3 542,214 - -0.2 542,217 - -0.9 542,217 - +1.0 542,242 - +0.1 542,260 - -0.9 542,260 - +0.2 542,368 + GEMAOFIL_00478 0.12 -1.2 542,369 - GEMAOFIL_00478 0.12 -0.8 542,369 - GEMAOFIL_00478 0.12 -0.4 542,414 + GEMAOFIL_00478 0.14 -1.1 542,415 - GEMAOFIL_00478 0.14 +0.2 542,430 - GEMAOFIL_00478 0.15 -0.0 542,581 - GEMAOFIL_00478 0.21 -1.7 542,729 - GEMAOFIL_00478 0.28 +1.9
Or see this region's nucleotide sequence