Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00480

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00478 and GEMAOFIL_00479 overlap by 4 nucleotidesGEMAOFIL_00479 and GEMAOFIL_00480 are separated by 97 nucleotidesGEMAOFIL_00480 and GEMAOFIL_00481 are separated by 132 nucleotidesGEMAOFIL_00481 and GEMAOFIL_00482 are separated by 107 nucleotides GEMAOFIL_00478: GEMAOFIL_00478 - Protein YdeP, at 542,083 to 544,431 _00478 GEMAOFIL_00479: GEMAOFIL_00479 - Sulfur carrier protein FdhD, at 544,428 to 545,267 _00479 GEMAOFIL_00480: GEMAOFIL_00480 - HTH-type transcriptional regulator HdfR, at 545,365 to 546,252 _00480 GEMAOFIL_00481: GEMAOFIL_00481 - Potassium binding protein Kbp, at 546,385 to 546,825 _00481 GEMAOFIL_00482: GEMAOFIL_00482 - GMP/IMP nucleotidase YrfG, at 546,933 to 547,595 _00482 Position (kb) 545 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1at 544.379 kb on + strandat 544.380 kb on - strandat 544.380 kb on - strandat 544.380 kb on - strandat 544.380 kb on - strandat 544.389 kb on - strandat 544.457 kb on - strandat 544.457 kb on - strandat 544.674 kb on - strand, within GEMAOFIL_00479at 544.736 kb on + strand, within GEMAOFIL_00479at 544.766 kb on - strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.014 kb on + strand, within GEMAOFIL_00479at 545.015 kb on - strand, within GEMAOFIL_00479at 545.018 kb on + strand, within GEMAOFIL_00479at 545.120 kb on + strand, within GEMAOFIL_00479at 545.123 kb on - strand, within GEMAOFIL_00479at 545.191 kb on + strandat 545.192 kb on - strandat 545.197 kb on + strandat 545.198 kb on - strandat 545.300 kb on + strandat 545.390 kb on + strandat 545.560 kb on + strand, within GEMAOFIL_00480at 545.569 kb on + strand, within GEMAOFIL_00480at 545.570 kb on - strand, within GEMAOFIL_00480at 545.570 kb on - strand, within GEMAOFIL_00480at 545.570 kb on - strand, within GEMAOFIL_00480at 545.572 kb on + strand, within GEMAOFIL_00480at 545.572 kb on + strand, within GEMAOFIL_00480at 545.816 kb on + strand, within GEMAOFIL_00480at 545.816 kb on + strand, within GEMAOFIL_00480at 545.817 kb on - strand, within GEMAOFIL_00480at 545.980 kb on - strand, within GEMAOFIL_00480at 545.980 kb on - strand, within GEMAOFIL_00480at 546.029 kb on + strand, within GEMAOFIL_00480at 546.174 kb on + strandat 546.342 kb on + strandat 546.364 kb on - strandat 546.367 kb on + strandat 546.722 kb on - strand, within GEMAOFIL_00481at 546.739 kb on + strand, within GEMAOFIL_00481at 546.740 kb on - strand, within GEMAOFIL_00481at 546.740 kb on - strand, within GEMAOFIL_00481at 546.879 kb on + strandat 546.879 kb on + strandat 546.880 kb on - strandat 546.880 kb on - strandat 546.880 kb on - strandat 546.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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544,379 + +0.2
544,380 - +1.0
544,380 - -1.8
544,380 - -0.1
544,380 - +0.4
544,389 - +0.0
544,457 - +0.6
544,457 - -0.4
544,674 - GEMAOFIL_00479 0.29 +0.2
544,736 + GEMAOFIL_00479 0.37 +1.0
544,766 - GEMAOFIL_00479 0.40 +0.1
545,014 + GEMAOFIL_00479 0.70 +0.4
545,014 + GEMAOFIL_00479 0.70 +0.0
545,014 + GEMAOFIL_00479 0.70 +0.2
545,014 + GEMAOFIL_00479 0.70 -0.1
545,015 - GEMAOFIL_00479 0.70 -0.6
545,018 + GEMAOFIL_00479 0.70 -0.3
545,120 + GEMAOFIL_00479 0.82 -1.4
545,123 - GEMAOFIL_00479 0.83 -0.3
545,191 + +0.4
545,192 - -0.2
545,197 + +0.0
545,198 - -0.1
545,300 + +1.2
545,390 + -1.0
545,560 + GEMAOFIL_00480 0.22 +0.4
545,569 + GEMAOFIL_00480 0.23 -0.1
545,570 - GEMAOFIL_00480 0.23 -0.4
545,570 - GEMAOFIL_00480 0.23 +0.9
545,570 - GEMAOFIL_00480 0.23 +0.9
545,572 + GEMAOFIL_00480 0.23 +0.1
545,572 + GEMAOFIL_00480 0.23 -0.1
545,816 + GEMAOFIL_00480 0.51 +0.8
545,816 + GEMAOFIL_00480 0.51 -2.8
545,817 - GEMAOFIL_00480 0.51 -0.0
545,980 - GEMAOFIL_00480 0.69 +0.9
545,980 - GEMAOFIL_00480 0.69 +0.0
546,029 + GEMAOFIL_00480 0.75 -0.1
546,174 + -0.1
546,342 + +0.1
546,364 - +0.0
546,367 + +0.2
546,722 - GEMAOFIL_00481 0.76 +0.3
546,739 + GEMAOFIL_00481 0.80 -0.2
546,740 - GEMAOFIL_00481 0.80 +0.2
546,740 - GEMAOFIL_00481 0.80 +0.1
546,879 + -0.1
546,879 + +0.4
546,880 - +0.6
546,880 - +0.1
546,880 - +0.4
546,880 - +0.7

Or see this region's nucleotide sequence