Strain Fitness in Pseudomonas lactucae CFBP13502 around GEMAOFIL_00477

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGEMAOFIL_00475 and GEMAOFIL_00476 are separated by 23 nucleotidesGEMAOFIL_00476 and GEMAOFIL_00477 are separated by 110 nucleotidesGEMAOFIL_00477 and GEMAOFIL_00478 are separated by 207 nucleotides GEMAOFIL_00475: GEMAOFIL_00475 - ATP-dependent RNA helicase RhlB, at 538,890 to 540,827 _00475 GEMAOFIL_00476: GEMAOFIL_00476 - hypothetical protein, at 540,851 to 541,282 _00476 GEMAOFIL_00477: GEMAOFIL_00477 - hypothetical protein, at 541,393 to 541,875 _00477 GEMAOFIL_00478: GEMAOFIL_00478 - Protein YdeP, at 542,083 to 544,431 _00478 Position (kb) 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1at 540.400 kb on + strand, within GEMAOFIL_00475at 540.402 kb on + strand, within GEMAOFIL_00475at 540.402 kb on + strand, within GEMAOFIL_00475at 540.402 kb on + strand, within GEMAOFIL_00475at 540.403 kb on - strand, within GEMAOFIL_00475at 540.638 kb on + strandat 540.734 kb on - strandat 540.775 kb on - strandat 540.780 kb on + strandat 540.826 kb on - strandat 540.848 kb on + strandat 540.848 kb on + strandat 540.848 kb on + strandat 540.848 kb on + strandat 540.849 kb on - strandat 540.849 kb on - strandat 540.849 kb on - strandat 540.849 kb on - strandat 540.881 kb on + strandat 540.905 kb on - strand, within GEMAOFIL_00476at 540.929 kb on + strand, within GEMAOFIL_00476at 540.930 kb on - strand, within GEMAOFIL_00476at 540.930 kb on - strand, within GEMAOFIL_00476at 540.953 kb on + strand, within GEMAOFIL_00476at 540.953 kb on + strand, within GEMAOFIL_00476at 540.953 kb on + strand, within GEMAOFIL_00476at 540.953 kb on + strand, within GEMAOFIL_00476at 540.957 kb on - strand, within GEMAOFIL_00476at 540.982 kb on + strand, within GEMAOFIL_00476at 540.982 kb on + strand, within GEMAOFIL_00476at 540.982 kb on + strand, within GEMAOFIL_00476at 540.982 kb on + strand, within GEMAOFIL_00476at 540.983 kb on - strand, within GEMAOFIL_00476at 540.983 kb on - strand, within GEMAOFIL_00476at 540.983 kb on - strand, within GEMAOFIL_00476at 540.986 kb on + strand, within GEMAOFIL_00476at 540.986 kb on + strand, within GEMAOFIL_00476at 541.061 kb on + strand, within GEMAOFIL_00476at 541.062 kb on - strand, within GEMAOFIL_00476at 541.139 kb on + strand, within GEMAOFIL_00476at 541.140 kb on - strand, within GEMAOFIL_00476at 541.140 kb on - strand, within GEMAOFIL_00476at 541.281 kb on - strandat 541.314 kb on - strandat 541.364 kb on - strandat 541.388 kb on - strandat 541.464 kb on - strand, within GEMAOFIL_00477at 541.532 kb on + strand, within GEMAOFIL_00477at 541.532 kb on + strand, within GEMAOFIL_00477at 541.532 kb on + strand, within GEMAOFIL_00477at 541.533 kb on - strand, within GEMAOFIL_00477at 541.768 kb on + strand, within GEMAOFIL_00477at 541.792 kb on + strand, within GEMAOFIL_00477at 541.882 kb on - strandat 541.936 kb on - strandat 541.936 kb on - strandat 542.161 kb on - strandat 542.161 kb on - strandat 542.214 kb on - strandat 542.217 kb on - strandat 542.217 kb on - strandat 542.242 kb on - strandat 542.260 kb on - strandat 542.260 kb on - strandat 542.368 kb on + strand, within GEMAOFIL_00478at 542.369 kb on - strand, within GEMAOFIL_00478at 542.369 kb on - strand, within GEMAOFIL_00478at 542.414 kb on + strand, within GEMAOFIL_00478at 542.415 kb on - strand, within GEMAOFIL_00478at 542.430 kb on - strand, within GEMAOFIL_00478at 542.581 kb on - strand, within GEMAOFIL_00478at 542.729 kb on - strand, within GEMAOFIL_00478

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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540,400 + GEMAOFIL_00475 0.78 -0.1
540,402 + GEMAOFIL_00475 0.78 -0.1
540,402 + GEMAOFIL_00475 0.78 -1.2
540,402 + GEMAOFIL_00475 0.78 -1.0
540,403 - GEMAOFIL_00475 0.78 -0.4
540,638 + -0.1
540,734 - -0.0
540,775 - +1.0
540,780 + +0.7
540,826 - +0.8
540,848 + +0.6
540,848 + -0.7
540,848 + +0.3
540,848 + -0.4
540,849 - +1.5
540,849 - -0.2
540,849 - +1.0
540,849 - -2.4
540,881 + -1.1
540,905 - GEMAOFIL_00476 0.12 +1.0
540,929 + GEMAOFIL_00476 0.18 +0.9
540,930 - GEMAOFIL_00476 0.18 -0.6
540,930 - GEMAOFIL_00476 0.18 +0.4
540,953 + GEMAOFIL_00476 0.24 +0.8
540,953 + GEMAOFIL_00476 0.24 -1.1
540,953 + GEMAOFIL_00476 0.24 +0.1
540,953 + GEMAOFIL_00476 0.24 -0.5
540,957 - GEMAOFIL_00476 0.25 +0.2
540,982 + GEMAOFIL_00476 0.30 +0.7
540,982 + GEMAOFIL_00476 0.30 -0.7
540,982 + GEMAOFIL_00476 0.30 -0.2
540,982 + GEMAOFIL_00476 0.30 +1.3
540,983 - GEMAOFIL_00476 0.31 +0.4
540,983 - GEMAOFIL_00476 0.31 -0.8
540,983 - GEMAOFIL_00476 0.31 -0.0
540,986 + GEMAOFIL_00476 0.31 -1.1
540,986 + GEMAOFIL_00476 0.31 +0.4
541,061 + GEMAOFIL_00476 0.49 -0.4
541,062 - GEMAOFIL_00476 0.49 +0.2
541,139 + GEMAOFIL_00476 0.67 +0.4
541,140 - GEMAOFIL_00476 0.67 +0.0
541,140 - GEMAOFIL_00476 0.67 -0.7
541,281 - +1.1
541,314 - -0.2
541,364 - -2.9
541,388 - -0.2
541,464 - GEMAOFIL_00477 0.15 +0.1
541,532 + GEMAOFIL_00477 0.29 -0.5
541,532 + GEMAOFIL_00477 0.29 +0.2
541,532 + GEMAOFIL_00477 0.29 +0.2
541,533 - GEMAOFIL_00477 0.29 -0.3
541,768 + GEMAOFIL_00477 0.78 +0.5
541,792 + GEMAOFIL_00477 0.83 +0.3
541,882 - -0.4
541,936 - +0.7
541,936 - -0.0
542,161 - -0.3
542,161 - -0.2
542,214 - +0.6
542,217 - -1.1
542,217 - +0.4
542,242 - -1.2
542,260 - +0.8
542,260 - +0.1
542,368 + GEMAOFIL_00478 0.12 -1.6
542,369 - GEMAOFIL_00478 0.12 -0.3
542,369 - GEMAOFIL_00478 0.12 -0.1
542,414 + GEMAOFIL_00478 0.14 -1.2
542,415 - GEMAOFIL_00478 0.14 +0.6
542,430 - GEMAOFIL_00478 0.15 +0.0
542,581 - GEMAOFIL_00478 0.21 -0.4
542,729 - GEMAOFIL_00478 0.28 +1.4

Or see this region's nucleotide sequence