Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GEMAOFIL_00626 and GEMAOFIL_00627 overlap by 4 nucleotides GEMAOFIL_00627 and GEMAOFIL_00628 are separated by 13 nucleotides GEMAOFIL_00628 and GEMAOFIL_00629 are separated by 31 nucleotides GEMAOFIL_00629 and GEMAOFIL_00630 are separated by 115 nucleotides
GEMAOFIL_00626: GEMAOFIL_00626 - hypothetical protein, at 727,521 to 728,075
_00626
GEMAOFIL_00627: GEMAOFIL_00627 - hypothetical protein, at 728,072 to 729,043
_00627
GEMAOFIL_00628: GEMAOFIL_00628 - Type IV pilus biogenesis and competence protein PilQ, at 729,057 to 730,439
_00628
GEMAOFIL_00629: GEMAOFIL_00629 - Shikimate kinase 1, at 730,471 to 730,962
_00629
GEMAOFIL_00630: GEMAOFIL_00630 - 3-dehydroquinate synthase, at 731,078 to 732,178
_00630
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 728.314 kb on - strand, within GEMAOFIL_00627 at 728.422 kb on - strand, within GEMAOFIL_00627 at 728.469 kb on - strand, within GEMAOFIL_00627 at 728.469 kb on - strand, within GEMAOFIL_00627 at 728.627 kb on + strand, within GEMAOFIL_00627 at 728.628 kb on - strand, within GEMAOFIL_00627 at 728.628 kb on - strand, within GEMAOFIL_00627 at 728.628 kb on - strand, within GEMAOFIL_00627 at 728.861 kb on + strand, within GEMAOFIL_00627 at 728.889 kb on + strand, within GEMAOFIL_00627 at 728.890 kb on - strand, within GEMAOFIL_00627 at 728.912 kb on + strand, within GEMAOFIL_00627 at 729.028 kb on - strand at 729.097 kb on + strand at 729.187 kb on - strand at 729.189 kb on - strand at 729.189 kb on - strand at 729.508 kb on - strand, within GEMAOFIL_00628 at 729.621 kb on + strand, within GEMAOFIL_00628 at 729.622 kb on - strand, within GEMAOFIL_00628 at 729.659 kb on - strand, within GEMAOFIL_00628 at 729.730 kb on - strand, within GEMAOFIL_00628 at 729.900 kb on + strand, within GEMAOFIL_00628 at 729.900 kb on + strand, within GEMAOFIL_00628 at 729.900 kb on + strand, within GEMAOFIL_00628 at 729.900 kb on + strand, within GEMAOFIL_00628 at 729.900 kb on + strand, within GEMAOFIL_00628 at 730.039 kb on - strand, within GEMAOFIL_00628 at 730.173 kb on + strand, within GEMAOFIL_00628 at 730.297 kb on + strand, within GEMAOFIL_00628 at 730.297 kb on + strand, within GEMAOFIL_00628 at 730.301 kb on + strand at 730.301 kb on + strand at 730.302 kb on - strand at 730.302 kb on - strand at 730.330 kb on - strand at 730.413 kb on - strand at 730.591 kb on - strand, within GEMAOFIL_00629 at 731.110 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 728,314 - GEMAOFIL_00627 0.25 +0.0 728,422 - GEMAOFIL_00627 0.36 -0.4 728,469 - GEMAOFIL_00627 0.41 +0.9 728,469 - GEMAOFIL_00627 0.41 -0.3 728,627 + GEMAOFIL_00627 0.57 +0.8 728,628 - GEMAOFIL_00627 0.57 +1.2 728,628 - GEMAOFIL_00627 0.57 +0.6 728,628 - GEMAOFIL_00627 0.57 +0.9 728,861 + GEMAOFIL_00627 0.81 -0.2 728,889 + GEMAOFIL_00627 0.84 +0.9 728,890 - GEMAOFIL_00627 0.84 -0.1 728,912 + GEMAOFIL_00627 0.86 +0.0 729,028 - -0.4 729,097 + +0.1 729,187 - +0.2 729,189 - -0.0 729,189 - +0.4 729,508 - GEMAOFIL_00628 0.33 -0.1 729,621 + GEMAOFIL_00628 0.41 +0.3 729,622 - GEMAOFIL_00628 0.41 -0.6 729,659 - GEMAOFIL_00628 0.44 +1.6 729,730 - GEMAOFIL_00628 0.49 -0.1 729,900 + GEMAOFIL_00628 0.61 -0.3 729,900 + GEMAOFIL_00628 0.61 +0.1 729,900 + GEMAOFIL_00628 0.61 -0.1 729,900 + GEMAOFIL_00628 0.61 +0.6 729,900 + GEMAOFIL_00628 0.61 +0.2 730,039 - GEMAOFIL_00628 0.71 +0.1 730,173 + GEMAOFIL_00628 0.81 +0.5 730,297 + GEMAOFIL_00628 0.90 +0.4 730,297 + GEMAOFIL_00628 0.90 +0.5 730,301 + +0.1 730,301 + +0.6 730,302 - -0.7 730,302 - -0.1 730,330 - -0.3 730,413 - -2.5 730,591 - GEMAOFIL_00629 0.24 -0.9 731,110 + -0.6
Or see this region's nucleotide sequence