Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06792

Experiment: NL-CCM; low oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06790 and MPMX19_06791 are separated by 247 nucleotidesMPMX19_06791 and MPMX19_06792 are separated by 75 nucleotidesMPMX19_06792 and MPMX19_06793 are separated by 253 nucleotidesMPMX19_06793 and MPMX19_06794 are separated by 36 nucleotides MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621 _06790 MPMX19_06791: MPMX19_06791 - Leucine-responsive regulatory protein, at 56,869 to 57,345 _06791 MPMX19_06792: MPMX19_06792 - 2-hydroxymuconic semialdehyde dehydrogenase, at 57,421 to 58,944 _06792 MPMX19_06793: MPMX19_06793 - hypothetical protein, at 59,198 to 59,716 _06793 MPMX19_06794: MPMX19_06794 - Glutarate-semialdehyde dehydrogenase, at 59,753 to 61,207 _06794 Position (kb) 57 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 56.521 kb on + strandat 56.521 kb on + strandat 56.522 kb on - strandat 56.522 kb on - strandat 56.655 kb on + strandat 56.655 kb on + strandat 56.655 kb on + strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.706 kb on + strandat 56.707 kb on - strandat 56.707 kb on - strandat 56.790 kb on + strandat 56.791 kb on - strandat 56.818 kb on + strandat 56.819 kb on - strandat 56.831 kb on + strandat 57.010 kb on + strand, within MPMX19_06791at 57.010 kb on + strand, within MPMX19_06791at 57.010 kb on + strand, within MPMX19_06791at 57.011 kb on - strand, within MPMX19_06791at 57.022 kb on + strand, within MPMX19_06791at 57.023 kb on - strand, within MPMX19_06791at 57.023 kb on - strand, within MPMX19_06791at 57.086 kb on + strand, within MPMX19_06791at 57.086 kb on + strand, within MPMX19_06791at 57.087 kb on - strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.220 kb on + strand, within MPMX19_06791at 57.221 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.280 kb on + strand, within MPMX19_06791at 57.281 kb on - strand, within MPMX19_06791at 57.281 kb on - strand, within MPMX19_06791at 57.485 kb on + strandat 57.486 kb on - strandat 57.500 kb on + strandat 57.500 kb on + strandat 57.500 kb on + strandat 57.501 kb on - strandat 57.501 kb on - strandat 57.650 kb on + strand, within MPMX19_06792at 57.650 kb on + strand, within MPMX19_06792at 57.651 kb on - strand, within MPMX19_06792at 57.651 kb on - strand, within MPMX19_06792at 57.666 kb on - strand, within MPMX19_06792at 57.666 kb on - strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.800 kb on + strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 57.801 kb on - strand, within MPMX19_06792at 58.018 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.064 kb on + strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792at 58.065 kb on - strand, within MPMX19_06792at 59.142 kb on + strandat 59.142 kb on + strandat 59.143 kb on - strandat 59.239 kb on - strandat 59.239 kb on - strandat 59.603 kb on + strand, within MPMX19_06793at 59.714 kb on + strandat 59.715 kb on - strandat 59.754 kb on + strandat 59.755 kb on - strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.775 kb on + strandat 59.776 kb on - strandat 59.776 kb on - strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.790 kb on + strandat 59.791 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
remove
56,521 + -0.5
56,521 + +0.7
56,522 - -0.6
56,522 - -0.4
56,655 + -0.8
56,655 + -0.6
56,655 + -1.0
56,656 - -0.1
56,656 - +0.6
56,656 - -0.7
56,706 + +0.2
56,707 - -0.4
56,707 - -0.6
56,790 + -0.4
56,791 - -0.4
56,818 + +1.7
56,819 - -0.5
56,831 + -0.5
57,010 + MPMX19_06791 0.30 -1.8
57,010 + MPMX19_06791 0.30 -0.1
57,010 + MPMX19_06791 0.30 +0.5
57,011 - MPMX19_06791 0.30 -0.7
57,022 + MPMX19_06791 0.32 +0.5
57,023 - MPMX19_06791 0.32 -2.0
57,023 - MPMX19_06791 0.32 -0.6
57,086 + MPMX19_06791 0.45 +0.7
57,086 + MPMX19_06791 0.45 -1.2
57,087 - MPMX19_06791 0.46 -0.1
57,184 + MPMX19_06791 0.66 -0.8
57,184 + MPMX19_06791 0.66 -0.8
57,184 + MPMX19_06791 0.66 -0.7
57,185 - MPMX19_06791 0.66 +1.2
57,185 - MPMX19_06791 0.66 -1.1
57,185 - MPMX19_06791 0.66 +0.0
57,220 + MPMX19_06791 0.74 -2.0
57,221 - MPMX19_06791 0.74 -1.0
57,272 - MPMX19_06791 0.84 +0.2
57,272 - MPMX19_06791 0.84 +1.3
57,272 - MPMX19_06791 0.84 +0.0
57,272 - MPMX19_06791 0.84 +0.7
57,280 + MPMX19_06791 0.86 -1.8
57,281 - MPMX19_06791 0.86 -2.0
57,281 - MPMX19_06791 0.86 -0.3
57,485 + -0.2
57,486 - +0.2
57,500 + -1.0
57,500 + -0.1
57,500 + -1.4
57,501 - -1.2
57,501 - -1.4
57,650 + MPMX19_06792 0.15 -0.8
57,650 + MPMX19_06792 0.15 +1.4
57,651 - MPMX19_06792 0.15 -1.7
57,651 - MPMX19_06792 0.15 +0.3
57,666 - MPMX19_06792 0.16 -1.7
57,666 - MPMX19_06792 0.16 -1.1
57,800 + MPMX19_06792 0.25 -1.3
57,800 + MPMX19_06792 0.25 +0.0
57,800 + MPMX19_06792 0.25 -0.8
57,800 + MPMX19_06792 0.25 -0.1
57,800 + MPMX19_06792 0.25 +0.9
57,800 + MPMX19_06792 0.25 +0.9
57,800 + MPMX19_06792 0.25 -0.8
57,800 + MPMX19_06792 0.25 -0.3
57,800 + MPMX19_06792 0.25 -0.3
57,800 + MPMX19_06792 0.25 -0.1
57,800 + MPMX19_06792 0.25 +0.2
57,800 + MPMX19_06792 0.25 -1.1
57,800 + MPMX19_06792 0.25 -0.1
57,800 + MPMX19_06792 0.25 -1.3
57,800 + MPMX19_06792 0.25 -1.1
57,800 + MPMX19_06792 0.25 -1.1
57,800 + MPMX19_06792 0.25 -1.1
57,800 + MPMX19_06792 0.25 -0.0
57,800 + MPMX19_06792 0.25 -0.4
57,800 + MPMX19_06792 0.25 -0.6
57,801 - MPMX19_06792 0.25 +1.9
57,801 - MPMX19_06792 0.25 -1.1
57,801 - MPMX19_06792 0.25 -0.3
57,801 - MPMX19_06792 0.25 -0.4
57,801 - MPMX19_06792 0.25 -0.4
57,801 - MPMX19_06792 0.25 -0.3
57,801 - MPMX19_06792 0.25 +0.4
57,801 - MPMX19_06792 0.25 -0.9
57,801 - MPMX19_06792 0.25 -0.8
57,801 - MPMX19_06792 0.25 -3.0
57,801 - MPMX19_06792 0.25 -1.3
57,801 - MPMX19_06792 0.25 -1.2
58,018 + MPMX19_06792 0.39 +0.7
58,064 + MPMX19_06792 0.42 -0.1
58,064 + MPMX19_06792 0.42 -1.3
58,064 + MPMX19_06792 0.42 -0.2
58,064 + MPMX19_06792 0.42 -0.6
58,065 - MPMX19_06792 0.42 -1.2
58,065 - MPMX19_06792 0.42 -2.0
58,065 - MPMX19_06792 0.42 +1.7
58,065 - MPMX19_06792 0.42 -1.0
59,142 + -1.3
59,142 + -1.1
59,143 - -0.6
59,239 - -0.2
59,239 - -0.7
59,603 + MPMX19_06793 0.78 -0.8
59,714 + -1.3
59,715 - -0.8
59,754 + -0.3
59,755 - -0.2
59,775 + -1.7
59,775 + -0.3
59,775 + +0.2
59,775 + +0.1
59,775 + -0.7
59,776 - +0.3
59,776 - -1.0
59,790 + -1.2
59,790 + +0.9
59,790 + -0.6
59,790 + +1.0
59,790 + -1.6
59,791 - -0.0

Or see this region's nucleotide sequence