Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06608 and MPMX19_06609 are separated by 247 nucleotides MPMX19_06609 and MPMX19_06610 are separated by 100 nucleotides MPMX19_06610 and MPMX19_06611 are separated by 216 nucleotides
MPMX19_06608: MPMX19_06608 - hypothetical protein, at 110,747 to 112,075
_06608
MPMX19_06609: MPMX19_06609 - hypothetical protein, at 112,323 to 113,924
_06609
MPMX19_06610: MPMX19_06610 - hypothetical protein, at 114,025 to 114,585
_06610
MPMX19_06611: MPMX19_06611 - Phosphoheptose isomerase, at 114,802 to 115,389
_06611
Position (kb) 112
113
114 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.369 kb on + strand, within MPMX19_06608 at 111.370 kb on - strand, within MPMX19_06608 at 111.370 kb on - strand, within MPMX19_06608 at 111.370 kb on - strand, within MPMX19_06608 at 111.370 kb on - strand, within MPMX19_06608 at 111.426 kb on + strand, within MPMX19_06608 at 111.427 kb on - strand, within MPMX19_06608 at 111.427 kb on - strand, within MPMX19_06608 at 111.438 kb on + strand, within MPMX19_06608 at 111.438 kb on + strand, within MPMX19_06608 at 111.438 kb on + strand, within MPMX19_06608 at 111.438 kb on + strand, within MPMX19_06608 at 111.438 kb on + strand, within MPMX19_06608 at 111.439 kb on - strand, within MPMX19_06608 at 111.439 kb on - strand, within MPMX19_06608 at 111.579 kb on + strand, within MPMX19_06608 at 111.579 kb on + strand, within MPMX19_06608 at 111.580 kb on - strand, within MPMX19_06608 at 111.580 kb on - strand, within MPMX19_06608 at 111.580 kb on - strand, within MPMX19_06608 at 111.825 kb on + strand, within MPMX19_06608 at 111.826 kb on - strand, within MPMX19_06608 at 111.826 kb on - strand, within MPMX19_06608 at 111.826 kb on - strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.852 kb on + strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.853 kb on - strand, within MPMX19_06608 at 111.954 kb on + strand at 111.954 kb on + strand at 111.954 kb on + strand at 111.954 kb on + strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 111.955 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.132 kb on - strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.215 kb on + strand at 112.501 kb on + strand, within MPMX19_06609 at 112.561 kb on + strand, within MPMX19_06609 at 112.561 kb on + strand, within MPMX19_06609 at 112.561 kb on + strand, within MPMX19_06609 at 112.561 kb on + strand, within MPMX19_06609 at 112.562 kb on - strand, within MPMX19_06609 at 112.562 kb on - strand, within MPMX19_06609 at 112.562 kb on - strand, within MPMX19_06609 at 112.663 kb on + strand, within MPMX19_06609 at 112.664 kb on - strand, within MPMX19_06609 at 112.664 kb on - strand, within MPMX19_06609 at 112.664 kb on - strand, within MPMX19_06609 at 112.940 kb on - strand, within MPMX19_06609 at 112.940 kb on - strand, within MPMX19_06609 at 112.940 kb on - strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.161 kb on + strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.162 kb on - strand, within MPMX19_06609 at 113.377 kb on + strand, within MPMX19_06609 at 113.378 kb on - strand, within MPMX19_06609 at 113.378 kb on - strand, within MPMX19_06609 at 113.378 kb on - strand, within MPMX19_06609 at 113.378 kb on - strand, within MPMX19_06609 at 113.846 kb on - strand at 113.846 kb on - strand at 113.906 kb on + strand at 113.906 kb on + strand at 113.907 kb on - strand at 113.907 kb on - strand at 114.239 kb on + strand, within MPMX19_06610 at 114.239 kb on + strand, within MPMX19_06610 at 114.240 kb on - strand, within MPMX19_06610 at 114.240 kb on - strand, within MPMX19_06610 at 114.240 kb on - strand, within MPMX19_06610 at 114.240 kb on - strand, within MPMX19_06610 at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.539 kb on + strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.540 kb on - strand at 114.585 kb on + strand at 114.585 kb on + strand at 114.585 kb on + strand at 114.585 kb on + strand at 114.585 kb on + strand at 114.585 kb on + strand at 114.586 kb on - strand at 114.586 kb on - strand at 114.586 kb on - strand at 114.586 kb on - strand at 114.586 kb on - strand at 114.632 kb on - strand at 114.635 kb on + strand at 114.635 kb on + strand at 114.635 kb on + strand at 114.636 kb on - strand at 114.636 kb on - strand at 114.636 kb on - strand at 114.636 kb on - strand at 114.636 kb on - strand at 114.636 kb on - strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.703 kb on + strand at 114.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 111,369 + MPMX19_06608 0.47 -0.3 111,369 + MPMX19_06608 0.47 -0.3 111,369 + MPMX19_06608 0.47 +0.2 111,369 + MPMX19_06608 0.47 -1.5 111,369 + MPMX19_06608 0.47 -1.0 111,369 + MPMX19_06608 0.47 -0.8 111,369 + MPMX19_06608 0.47 -0.9 111,369 + MPMX19_06608 0.47 -0.3 111,369 + MPMX19_06608 0.47 +1.4 111,370 - MPMX19_06608 0.47 -0.3 111,370 - MPMX19_06608 0.47 -0.5 111,370 - MPMX19_06608 0.47 +0.1 111,370 - MPMX19_06608 0.47 +1.1 111,426 + MPMX19_06608 0.51 -1.3 111,427 - MPMX19_06608 0.51 -0.2 111,427 - MPMX19_06608 0.51 +0.8 111,438 + MPMX19_06608 0.52 -1.6 111,438 + MPMX19_06608 0.52 -0.8 111,438 + MPMX19_06608 0.52 -0.3 111,438 + MPMX19_06608 0.52 -1.1 111,438 + MPMX19_06608 0.52 +0.2 111,439 - MPMX19_06608 0.52 +0.1 111,439 - MPMX19_06608 0.52 -0.2 111,579 + MPMX19_06608 0.63 -0.7 111,579 + MPMX19_06608 0.63 +1.5 111,580 - MPMX19_06608 0.63 -0.3 111,580 - MPMX19_06608 0.63 -1.3 111,580 - MPMX19_06608 0.63 -2.1 111,825 + MPMX19_06608 0.81 +0.6 111,826 - MPMX19_06608 0.81 -0.9 111,826 - MPMX19_06608 0.81 -1.8 111,826 - MPMX19_06608 0.81 -1.6 111,852 + MPMX19_06608 0.83 -1.0 111,852 + MPMX19_06608 0.83 -0.1 111,852 + MPMX19_06608 0.83 -1.1 111,852 + MPMX19_06608 0.83 -0.1 111,852 + MPMX19_06608 0.83 +0.2 111,852 + MPMX19_06608 0.83 -1.7 111,852 + MPMX19_06608 0.83 -1.4 111,852 + MPMX19_06608 0.83 -0.1 111,852 + MPMX19_06608 0.83 -1.0 111,852 + MPMX19_06608 0.83 -1.0 111,852 + MPMX19_06608 0.83 -0.7 111,852 + MPMX19_06608 0.83 -0.6 111,853 - MPMX19_06608 0.83 +0.1 111,853 - MPMX19_06608 0.83 -1.8 111,853 - MPMX19_06608 0.83 -0.1 111,853 - MPMX19_06608 0.83 -0.5 111,853 - MPMX19_06608 0.83 -0.9 111,853 - MPMX19_06608 0.83 +0.1 111,853 - MPMX19_06608 0.83 -0.4 111,853 - MPMX19_06608 0.83 -1.2 111,853 - MPMX19_06608 0.83 -0.7 111,853 - MPMX19_06608 0.83 +0.8 111,954 + -0.1 111,954 + -1.2 111,954 + -2.1 111,954 + -1.3 111,955 - +0.1 111,955 - -1.4 111,955 - +0.4 111,955 - -1.8 111,955 - -0.5 111,955 - -0.5 111,955 - -0.7 111,955 - -0.1 111,955 - -0.0 111,955 - -0.7 111,955 - -0.5 112,132 - -0.9 112,132 - -0.6 112,132 - -0.1 112,132 - -0.5 112,132 - +0.4 112,132 - +0.1 112,132 - -1.3 112,132 - -0.4 112,132 - -0.7 112,132 - -0.1 112,215 + -1.7 112,215 + -1.1 112,215 + -0.2 112,215 + -0.1 112,215 + +0.0 112,215 + +0.5 112,215 + -2.5 112,215 + -2.9 112,215 + -0.3 112,215 + -0.4 112,215 + -0.6 112,215 + +0.5 112,215 + -0.3 112,215 + -0.0 112,501 + MPMX19_06609 0.11 -0.2 112,561 + MPMX19_06609 0.15 -0.9 112,561 + MPMX19_06609 0.15 -0.3 112,561 + MPMX19_06609 0.15 -1.5 112,561 + MPMX19_06609 0.15 -1.5 112,562 - MPMX19_06609 0.15 -1.2 112,562 - MPMX19_06609 0.15 -0.2 112,562 - MPMX19_06609 0.15 -0.6 112,663 + MPMX19_06609 0.21 -0.5 112,664 - MPMX19_06609 0.21 -0.7 112,664 - MPMX19_06609 0.21 -0.3 112,664 - MPMX19_06609 0.21 -0.1 112,940 - MPMX19_06609 0.39 +0.4 112,940 - MPMX19_06609 0.39 -1.4 112,940 - MPMX19_06609 0.39 -0.2 113,161 + MPMX19_06609 0.52 -0.2 113,161 + MPMX19_06609 0.52 -0.8 113,161 + MPMX19_06609 0.52 -1.6 113,161 + MPMX19_06609 0.52 +0.4 113,161 + MPMX19_06609 0.52 -0.4 113,161 + MPMX19_06609 0.52 -1.5 113,161 + MPMX19_06609 0.52 -0.5 113,161 + MPMX19_06609 0.52 -0.9 113,161 + MPMX19_06609 0.52 -2.1 113,161 + MPMX19_06609 0.52 -0.5 113,161 + MPMX19_06609 0.52 -1.1 113,161 + MPMX19_06609 0.52 -0.1 113,161 + MPMX19_06609 0.52 -0.8 113,161 + MPMX19_06609 0.52 -0.5 113,161 + MPMX19_06609 0.52 -0.5 113,161 + MPMX19_06609 0.52 -0.2 113,161 + MPMX19_06609 0.52 -0.4 113,161 + MPMX19_06609 0.52 -0.9 113,161 + MPMX19_06609 0.52 +0.5 113,161 + MPMX19_06609 0.52 +0.6 113,161 + MPMX19_06609 0.52 +1.4 113,161 + MPMX19_06609 0.52 -0.7 113,161 + MPMX19_06609 0.52 -1.9 113,162 - MPMX19_06609 0.52 -1.2 113,162 - MPMX19_06609 0.52 -1.9 113,162 - MPMX19_06609 0.52 +0.9 113,162 - MPMX19_06609 0.52 -1.8 113,162 - MPMX19_06609 0.52 -0.5 113,162 - MPMX19_06609 0.52 -0.2 113,162 - MPMX19_06609 0.52 -0.0 113,162 - MPMX19_06609 0.52 -0.0 113,162 - MPMX19_06609 0.52 -0.5 113,162 - MPMX19_06609 0.52 -0.7 113,162 - MPMX19_06609 0.52 -0.5 113,162 - MPMX19_06609 0.52 -0.2 113,162 - MPMX19_06609 0.52 -1.8 113,162 - MPMX19_06609 0.52 -0.5 113,162 - MPMX19_06609 0.52 -1.5 113,377 + MPMX19_06609 0.66 -0.2 113,378 - MPMX19_06609 0.66 -0.8 113,378 - MPMX19_06609 0.66 -0.5 113,378 - MPMX19_06609 0.66 -0.5 113,378 - MPMX19_06609 0.66 -0.1 113,846 - -0.4 113,846 - +0.5 113,906 + -0.9 113,906 + -0.6 113,907 - +0.8 113,907 - -0.7 114,239 + MPMX19_06610 0.38 +0.1 114,239 + MPMX19_06610 0.38 +1.3 114,240 - MPMX19_06610 0.38 +1.4 114,240 - MPMX19_06610 0.38 +0.9 114,240 - MPMX19_06610 0.38 +1.2 114,240 - MPMX19_06610 0.38 +0.5 114,539 + -1.5 114,539 + -1.2 114,539 + +1.2 114,539 + -0.7 114,539 + -0.5 114,539 + -1.2 114,539 + -0.0 114,539 + +0.5 114,539 + +0.2 114,539 + -0.4 114,539 + +0.9 114,539 + -1.1 114,539 + -1.0 114,539 + -0.5 114,540 - -1.7 114,540 - -0.5 114,540 - -1.3 114,540 - -0.8 114,540 - +1.9 114,540 - -1.7 114,540 - -1.3 114,540 - -0.3 114,540 - -2.0 114,540 - -1.7 114,540 - -1.1 114,585 + -0.5 114,585 + -1.7 114,585 + -1.3 114,585 + +0.5 114,585 + -0.3 114,585 + -1.6 114,586 - -1.5 114,586 - -0.9 114,586 - +0.1 114,586 - +1.1 114,586 - -0.1 114,632 - -0.5 114,635 + +1.4 114,635 + -1.0 114,635 + -1.3 114,636 - -0.0 114,636 - -1.1 114,636 - +0.1 114,636 - +1.0 114,636 - -0.5 114,636 - -1.7 114,703 + +0.9 114,703 + -0.6 114,703 + -0.4 114,703 + +1.4 114,703 + +0.6 114,703 + -1.0 114,703 + -1.3 114,703 + -0.1 114,703 + +0.2 114,703 + -0.6 114,703 + +0.1 114,704 - -0.9
Or see this region's nucleotide sequence