Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06424

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06422 and MPMX19_06423 are separated by 265 nucleotidesMPMX19_06423 and MPMX19_06424 are separated by 19 nucleotidesMPMX19_06424 and MPMX19_06425 are separated by 184 nucleotides MPMX19_06422: MPMX19_06422 - hypothetical protein, at 194,444 to 194,911 _06422 MPMX19_06423: MPMX19_06423 - hypothetical protein, at 195,177 to 195,776 _06423 MPMX19_06424: MPMX19_06424 - hypothetical protein, at 195,796 to 197,067 _06424 MPMX19_06425: MPMX19_06425 - hypothetical protein, at 197,252 to 197,722 _06425 Position (kb) 195 196 197 198Strain fitness (log2 ratio) -2 -1 0 1 2at 194.822 kb on + strand, within MPMX19_06422at 194.822 kb on + strand, within MPMX19_06422at 194.823 kb on - strand, within MPMX19_06422at 194.823 kb on - strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.848 kb on - strand, within MPMX19_06422at 194.848 kb on - strand, within MPMX19_06422at 194.992 kb on - strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.143 kb on - strandat 195.341 kb on + strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.365 kb on + strand, within MPMX19_06423at 195.439 kb on + strand, within MPMX19_06423at 195.439 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.568 kb on + strand, within MPMX19_06423at 195.568 kb on + strand, within MPMX19_06423at 195.569 kb on - strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.885 kb on - strandat 195.893 kb on + strandat 195.894 kb on - strandat 196.049 kb on + strand, within MPMX19_06424at 196.050 kb on - strand, within MPMX19_06424at 196.050 kb on - strand, within MPMX19_06424at 196.211 kb on + strand, within MPMX19_06424at 196.211 kb on + strand, within MPMX19_06424at 196.212 kb on - strand, within MPMX19_06424at 196.212 kb on - strand, within MPMX19_06424at 196.212 kb on - strand, within MPMX19_06424at 196.250 kb on + strand, within MPMX19_06424at 196.250 kb on + strand, within MPMX19_06424at 196.250 kb on + strand, within MPMX19_06424at 196.292 kb on + strand, within MPMX19_06424at 196.496 kb on + strand, within MPMX19_06424at 196.576 kb on + strand, within MPMX19_06424at 196.577 kb on - strand, within MPMX19_06424at 196.577 kb on - strand, within MPMX19_06424at 196.586 kb on + strand, within MPMX19_06424at 196.587 kb on - strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.787 kb on + strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.788 kb on - strand, within MPMX19_06424at 196.901 kb on + strand, within MPMX19_06424at 196.901 kb on + strand, within MPMX19_06424at 196.920 kb on + strand, within MPMX19_06424at 196.921 kb on - strand, within MPMX19_06424at 197.010 kb on - strandat 197.010 kb on - strandat 197.130 kb on + strandat 197.130 kb on + strandat 197.164 kb on + strandat 197.164 kb on + strandat 197.164 kb on + strandat 197.165 kb on - strandat 197.165 kb on - strandat 197.165 kb on - strandat 197.208 kb on + strandat 197.208 kb on + strandat 197.208 kb on + strandat 197.209 kb on - strandat 197.209 kb on - strandat 197.209 kb on - strandat 197.219 kb on + strandat 197.219 kb on + strandat 197.219 kb on + strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.220 kb on - strandat 197.793 kb on - strandat 197.793 kb on - strandat 197.793 kb on - strandat 197.826 kb on + strandat 197.826 kb on + strandat 197.827 kb on - strandat 197.841 kb on - strandat 197.841 kb on - strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.003 kb on + strandat 198.004 kb on - strandat 198.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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194,822 + MPMX19_06422 0.81 -1.4
194,822 + MPMX19_06422 0.81 +0.5
194,823 - MPMX19_06422 0.81 -0.1
194,823 - MPMX19_06422 0.81 -0.4
194,847 + MPMX19_06422 0.86 -0.8
194,847 + MPMX19_06422 0.86 -0.3
194,847 + MPMX19_06422 0.86 +1.0
194,847 + MPMX19_06422 0.86 -0.9
194,847 + MPMX19_06422 0.86 -1.8
194,847 + MPMX19_06422 0.86 -0.7
194,848 - MPMX19_06422 0.86 -0.3
194,848 - MPMX19_06422 0.86 -0.8
194,992 - +0.2
195,105 + -1.2
195,105 + -0.4
195,105 + -0.7
195,105 + -2.2
195,105 + -1.1
195,106 - +0.4
195,106 - +0.5
195,106 - -0.8
195,106 - +0.4
195,106 - -0.4
195,106 - -0.5
195,106 - -0.8
195,106 - -1.2
195,106 - -1.9
195,106 - -1.0
195,106 - -1.5
195,143 - -0.8
195,341 + MPMX19_06423 0.27 +0.9
195,342 - MPMX19_06423 0.28 -0.3
195,342 - MPMX19_06423 0.28 +1.4
195,342 - MPMX19_06423 0.28 -0.5
195,342 - MPMX19_06423 0.28 -0.0
195,365 + MPMX19_06423 0.31 -0.7
195,439 + MPMX19_06423 0.44 -1.0
195,439 + MPMX19_06423 0.44 -0.0
195,519 + MPMX19_06423 0.57 -0.0
195,519 + MPMX19_06423 0.57 -0.2
195,519 + MPMX19_06423 0.57 +0.3
195,519 + MPMX19_06423 0.57 -0.3
195,519 + MPMX19_06423 0.57 -0.1
195,519 + MPMX19_06423 0.57 +0.5
195,519 + MPMX19_06423 0.57 -0.2
195,519 + MPMX19_06423 0.57 +0.2
195,519 + MPMX19_06423 0.57 -0.1
195,520 - MPMX19_06423 0.57 -1.5
195,520 - MPMX19_06423 0.57 -1.0
195,520 - MPMX19_06423 0.57 +0.0
195,520 - MPMX19_06423 0.57 +1.3
195,520 - MPMX19_06423 0.57 -0.1
195,520 - MPMX19_06423 0.57 -0.4
195,520 - MPMX19_06423 0.57 +0.1
195,520 - MPMX19_06423 0.57 +1.0
195,520 - MPMX19_06423 0.57 -0.5
195,520 - MPMX19_06423 0.57 -0.1
195,520 - MPMX19_06423 0.57 -0.1
195,520 - MPMX19_06423 0.57 -2.0
195,520 - MPMX19_06423 0.57 +0.3
195,521 + MPMX19_06423 0.57 -1.0
195,521 + MPMX19_06423 0.57 +1.3
195,521 + MPMX19_06423 0.57 -0.0
195,522 - MPMX19_06423 0.57 -0.9
195,522 - MPMX19_06423 0.57 -0.5
195,522 - MPMX19_06423 0.57 -0.2
195,522 - MPMX19_06423 0.57 -1.5
195,568 + MPMX19_06423 0.65 -0.4
195,568 + MPMX19_06423 0.65 -0.9
195,569 - MPMX19_06423 0.65 -0.4
195,661 + MPMX19_06423 0.81 +0.1
195,661 + MPMX19_06423 0.81 -0.3
195,661 + MPMX19_06423 0.81 -0.3
195,661 + MPMX19_06423 0.81 -0.8
195,661 + MPMX19_06423 0.81 +0.2
195,885 - -1.7
195,893 + -0.7
195,894 - +0.2
196,049 + MPMX19_06424 0.20 +0.9
196,050 - MPMX19_06424 0.20 +0.1
196,050 - MPMX19_06424 0.20 +0.8
196,211 + MPMX19_06424 0.33 +0.6
196,211 + MPMX19_06424 0.33 -0.5
196,212 - MPMX19_06424 0.33 +0.4
196,212 - MPMX19_06424 0.33 -0.6
196,212 - MPMX19_06424 0.33 +0.0
196,250 + MPMX19_06424 0.36 -0.1
196,250 + MPMX19_06424 0.36 +0.1
196,250 + MPMX19_06424 0.36 +1.0
196,292 + MPMX19_06424 0.39 -0.8
196,496 + MPMX19_06424 0.55 -0.8
196,576 + MPMX19_06424 0.61 -0.3
196,577 - MPMX19_06424 0.61 -0.3
196,577 - MPMX19_06424 0.61 +0.2
196,586 + MPMX19_06424 0.62 +0.8
196,587 - MPMX19_06424 0.62 -0.2
196,640 + MPMX19_06424 0.66 -0.5
196,640 + MPMX19_06424 0.66 -0.3
196,640 + MPMX19_06424 0.66 +0.1
196,640 + MPMX19_06424 0.66 +0.2
196,640 + MPMX19_06424 0.66 -0.1
196,640 + MPMX19_06424 0.66 -0.5
196,640 + MPMX19_06424 0.66 +0.8
196,641 - MPMX19_06424 0.66 -1.8
196,641 - MPMX19_06424 0.66 +1.6
196,641 - MPMX19_06424 0.66 +0.4
196,641 - MPMX19_06424 0.66 -2.3
196,787 + MPMX19_06424 0.78 +0.2
196,787 + MPMX19_06424 0.78 +0.6
196,787 + MPMX19_06424 0.78 +1.0
196,787 + MPMX19_06424 0.78 -1.9
196,787 + MPMX19_06424 0.78 -0.5
196,787 + MPMX19_06424 0.78 -0.6
196,787 + MPMX19_06424 0.78 -0.0
196,787 + MPMX19_06424 0.78 -1.2
196,787 + MPMX19_06424 0.78 +1.8
196,787 + MPMX19_06424 0.78 +1.3
196,787 + MPMX19_06424 0.78 +0.6
196,787 + MPMX19_06424 0.78 -0.2
196,787 + MPMX19_06424 0.78 +0.5
196,787 + MPMX19_06424 0.78 -0.6
196,787 + MPMX19_06424 0.78 -1.4
196,787 + MPMX19_06424 0.78 -0.2
196,787 + MPMX19_06424 0.78 -0.2
196,788 - MPMX19_06424 0.78 -1.0
196,788 - MPMX19_06424 0.78 -0.9
196,788 - MPMX19_06424 0.78 +1.1
196,788 - MPMX19_06424 0.78 -0.4
196,788 - MPMX19_06424 0.78 -0.2
196,788 - MPMX19_06424 0.78 -0.5
196,788 - MPMX19_06424 0.78 -0.4
196,788 - MPMX19_06424 0.78 +0.7
196,788 - MPMX19_06424 0.78 +1.8
196,901 + MPMX19_06424 0.87 +0.2
196,901 + MPMX19_06424 0.87 -0.9
196,920 + MPMX19_06424 0.88 -0.6
196,921 - MPMX19_06424 0.88 -0.1
197,010 - -2.5
197,010 - -1.3
197,130 + -1.2
197,130 + -2.0
197,164 + +0.9
197,164 + -0.5
197,164 + -0.5
197,165 - -0.7
197,165 - +1.4
197,165 - +0.8
197,208 + +1.2
197,208 + -0.3
197,208 + +0.4
197,209 - -1.0
197,209 - -1.1
197,209 - -0.2
197,219 + -0.9
197,219 + -2.3
197,219 + +1.2
197,220 - +0.3
197,220 - -1.9
197,220 - +1.3
197,220 - -1.7
197,220 - +0.3
197,220 - +0.2
197,793 - +0.5
197,793 - -0.3
197,793 - +2.2
197,826 + -1.4
197,826 + +0.2
197,827 - -1.2
197,841 - -0.7
197,841 - -0.5
198,003 + -0.0
198,003 + +0.6
198,003 + -0.5
198,003 + -1.2
198,004 - +0.6
198,004 - -0.9

Or see this region's nucleotide sequence