Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06409 and MPMX19_06410 are separated by 121 nucleotides MPMX19_06410 and MPMX19_06411 are separated by 207 nucleotides MPMX19_06411 and MPMX19_06412 overlap by 4 nucleotides
MPMX19_06409: MPMX19_06409 - hypothetical protein, at 176,603 to 177,874
_06409
MPMX19_06410: MPMX19_06410 - hypothetical protein, at 177,996 to 178,355
_06410
MPMX19_06411: MPMX19_06411 - Adaptive-response sensory-kinase SasA, at 178,563 to 179,909
_06411
MPMX19_06412: MPMX19_06412 - Transcriptional regulatory protein OmpR, at 179,906 to 180,505
_06412
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.613 kb on - strand, within MPMX19_06409 at 177.613 kb on - strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.686 kb on - strand, within MPMX19_06409 at 177.686 kb on - strand, within MPMX19_06409 at 177.686 kb on - strand, within MPMX19_06409 at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.879 kb on - strand at 177.879 kb on - strand at 177.879 kb on - strand at 177.950 kb on - strand at 178.175 kb on + strand, within MPMX19_06410 at 178.175 kb on + strand, within MPMX19_06410 at 178.176 kb on - strand, within MPMX19_06410 at 178.379 kb on + strand at 178.391 kb on - strand at 178.564 kb on + strand at 178.564 kb on + strand at 178.564 kb on - strand at 178.565 kb on - strand at 178.565 kb on - strand at 178.596 kb on + strand at 178.596 kb on + strand at 178.597 kb on - strand at 178.597 kb on - strand at 178.625 kb on + strand at 178.625 kb on + strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.788 kb on - strand, within MPMX19_06411 at 178.819 kb on - strand, within MPMX19_06411 at 178.819 kb on - strand, within MPMX19_06411 at 178.819 kb on - strand, within MPMX19_06411 at 178.837 kb on + strand, within MPMX19_06411 at 178.837 kb on + strand, within MPMX19_06411 at 178.838 kb on - strand, within MPMX19_06411 at 178.838 kb on - strand, within MPMX19_06411 at 178.838 kb on - strand, within MPMX19_06411 at 178.842 kb on + strand, within MPMX19_06411 at 178.843 kb on - strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 179.046 kb on + strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.890 kb on - strand at 179.937 kb on + strand at 179.937 kb on + strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.959 kb on + strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 180.036 kb on + strand, within MPMX19_06412 at 180.036 kb on + strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.212 kb on + strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.353 kb on - strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.459 kb on - strand at 180.459 kb on - strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.493 kb on + strand at 180.493 kb on + strand at 180.494 kb on - strand at 180.520 kb on + strand at 180.521 kb on - strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.631 kb on + strand at 180.632 kb on - strand at 180.661 kb on + strand at 180.661 kb on + strand at 180.662 kb on - strand at 180.662 kb on - strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.808 kb on + strand at 180.809 kb on - strand at 180.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 177,579 + MPMX19_06409 0.77 -0.0 177,579 + MPMX19_06409 0.77 -0.2 177,579 + MPMX19_06409 0.77 +0.7 177,579 + MPMX19_06409 0.77 -0.1 177,579 + MPMX19_06409 0.77 +0.5 177,579 + MPMX19_06409 0.77 -0.4 177,580 - MPMX19_06409 0.77 +0.2 177,580 - MPMX19_06409 0.77 +0.3 177,580 - MPMX19_06409 0.77 -1.0 177,580 - MPMX19_06409 0.77 +0.5 177,613 - MPMX19_06409 0.79 -1.0 177,613 - MPMX19_06409 0.79 +1.2 177,685 + MPMX19_06409 0.85 -0.6 177,685 + MPMX19_06409 0.85 -1.6 177,685 + MPMX19_06409 0.85 +0.8 177,685 + MPMX19_06409 0.85 +0.1 177,685 + MPMX19_06409 0.85 +0.8 177,686 - MPMX19_06409 0.85 +0.2 177,686 - MPMX19_06409 0.85 -1.2 177,686 - MPMX19_06409 0.85 +0.5 177,878 + -0.1 177,878 + +0.1 177,878 + +0.5 177,878 + +0.1 177,878 + -0.5 177,878 + -0.2 177,878 + -0.1 177,878 + +0.6 177,878 + +0.1 177,879 - -1.0 177,879 - -0.6 177,879 - +0.8 177,950 - -0.4 178,175 + MPMX19_06410 0.50 +0.2 178,175 + MPMX19_06410 0.50 +0.8 178,176 - MPMX19_06410 0.50 -0.3 178,379 + -1.0 178,391 - -1.9 178,564 + +0.3 178,564 + +1.2 178,564 - -0.5 178,565 - -1.3 178,565 - +1.8 178,596 + -1.3 178,596 + +0.8 178,597 - +0.1 178,597 - -1.1 178,625 + -1.2 178,625 + -0.5 178,626 - -0.5 178,626 - -1.8 178,626 - -0.6 178,626 - -0.2 178,626 - +0.5 178,788 - MPMX19_06411 0.17 -1.7 178,819 - MPMX19_06411 0.19 +1.3 178,819 - MPMX19_06411 0.19 -1.4 178,819 - MPMX19_06411 0.19 +1.3 178,837 + MPMX19_06411 0.20 -1.2 178,837 + MPMX19_06411 0.20 +0.5 178,838 - MPMX19_06411 0.20 +1.0 178,838 - MPMX19_06411 0.20 -0.5 178,838 - MPMX19_06411 0.20 +1.1 178,842 + MPMX19_06411 0.21 -0.2 178,843 - MPMX19_06411 0.21 -0.5 178,924 + MPMX19_06411 0.27 -0.2 178,924 + MPMX19_06411 0.27 +0.2 178,924 + MPMX19_06411 0.27 +0.9 178,925 - MPMX19_06411 0.27 +0.5 178,925 - MPMX19_06411 0.27 +0.2 178,929 + MPMX19_06411 0.27 +0.6 178,929 + MPMX19_06411 0.27 -0.4 178,929 + MPMX19_06411 0.27 -0.1 178,929 + MPMX19_06411 0.27 +0.2 178,929 + MPMX19_06411 0.27 -0.5 178,929 + MPMX19_06411 0.27 +0.4 178,930 - MPMX19_06411 0.27 +0.8 178,930 - MPMX19_06411 0.27 +0.5 178,930 - MPMX19_06411 0.27 -1.7 179,046 + MPMX19_06411 0.36 +0.8 179,199 - MPMX19_06411 0.47 -1.4 179,199 - MPMX19_06411 0.47 +1.0 179,419 - MPMX19_06411 0.64 +0.1 179,419 - MPMX19_06411 0.64 -0.5 179,524 + MPMX19_06411 0.71 -0.4 179,524 + MPMX19_06411 0.71 -0.7 179,524 + MPMX19_06411 0.71 -0.7 179,524 + MPMX19_06411 0.71 +0.3 179,524 + MPMX19_06411 0.71 -1.9 179,524 + MPMX19_06411 0.71 -0.8 179,524 + MPMX19_06411 0.71 -0.6 179,524 + MPMX19_06411 0.71 -0.4 179,525 - MPMX19_06411 0.71 +0.8 179,525 - MPMX19_06411 0.71 +0.8 179,525 - MPMX19_06411 0.71 +0.4 179,525 - MPMX19_06411 0.71 +1.6 179,525 - MPMX19_06411 0.71 -0.1 179,525 - MPMX19_06411 0.71 +0.5 179,529 + MPMX19_06411 0.72 -1.0 179,529 + MPMX19_06411 0.72 -1.0 179,530 - MPMX19_06411 0.72 +1.2 179,530 - MPMX19_06411 0.72 -1.0 179,530 - MPMX19_06411 0.72 +0.3 179,622 + MPMX19_06411 0.79 -0.9 179,622 + MPMX19_06411 0.79 -0.5 179,622 + MPMX19_06411 0.79 +0.6 179,623 - MPMX19_06411 0.79 +0.5 179,623 - MPMX19_06411 0.79 -0.5 179,804 + -0.8 179,804 + -1.5 179,804 + +1.2 179,804 + -0.9 179,804 + -0.8 179,804 + +0.7 179,804 + +0.8 179,804 + -0.5 179,804 + -0.1 179,804 + +0.1 179,804 + -0.8 179,804 + +0.1 179,804 + -0.8 179,805 - -0.1 179,805 - +1.5 179,805 - -2.6 179,805 - -0.9 179,805 - +0.4 179,805 - -1.0 179,805 - +0.2 179,805 - -0.0 179,805 - -0.2 179,805 - -0.1 179,805 - -0.0 179,805 - +0.4 179,805 - +0.7 179,805 - -0.2 179,805 - -0.3 179,868 - -0.6 179,868 - -0.2 179,868 - -1.9 179,890 - -1.4 179,937 + -0.2 179,937 + -0.0 179,938 - -1.2 179,938 - -0.0 179,938 - -1.0 179,959 + -0.0 179,960 - -1.5 179,960 - +0.8 179,960 - -0.3 180,036 + MPMX19_06412 0.22 +0.8 180,036 + MPMX19_06412 0.22 +0.8 180,037 - MPMX19_06412 0.22 -0.8 180,037 - MPMX19_06412 0.22 +0.1 180,126 + MPMX19_06412 0.37 -1.0 180,126 + MPMX19_06412 0.37 -1.0 180,127 - MPMX19_06412 0.37 +0.2 180,127 - MPMX19_06412 0.37 -0.3 180,212 + MPMX19_06412 0.51 -0.1 180,213 - MPMX19_06412 0.51 -0.9 180,213 - MPMX19_06412 0.51 -1.0 180,318 + MPMX19_06412 0.69 -1.5 180,318 + MPMX19_06412 0.69 -0.1 180,318 + MPMX19_06412 0.69 -0.2 180,318 + MPMX19_06412 0.69 +0.1 180,318 + MPMX19_06412 0.69 -1.5 180,319 - MPMX19_06412 0.69 +1.1 180,319 - MPMX19_06412 0.69 -1.0 180,319 - MPMX19_06412 0.69 -1.0 180,319 - MPMX19_06412 0.69 -0.8 180,353 - MPMX19_06412 0.74 -1.4 180,439 + MPMX19_06412 0.89 +0.5 180,439 + MPMX19_06412 0.89 +2.1 180,439 + MPMX19_06412 0.89 -0.8 180,439 + MPMX19_06412 0.89 -0.3 180,440 - MPMX19_06412 0.89 -0.4 180,440 - MPMX19_06412 0.89 -0.1 180,440 - MPMX19_06412 0.89 +1.0 180,440 - MPMX19_06412 0.89 -0.1 180,458 + +0.6 180,458 + -0.4 180,458 + +0.5 180,458 + +0.2 180,458 + +0.4 180,459 - -0.5 180,459 - -1.1 180,476 + -0.4 180,476 + +0.1 180,476 + -0.6 180,477 - +0.2 180,477 - +0.6 180,477 - +0.2 180,477 - +0.6 180,477 - +0.3 180,493 + -0.6 180,493 + -0.2 180,494 - -0.7 180,520 + -1.4 180,521 - -0.5 180,613 + -0.7 180,613 + +1.2 180,613 + -1.4 180,613 + +0.2 180,614 - -0.5 180,614 - +0.3 180,614 - -0.2 180,614 - -1.6 180,631 + -0.9 180,632 - +0.6 180,661 + +0.8 180,661 + -0.3 180,662 - -1.4 180,662 - -3.6 180,781 + -0.1 180,781 + -0.5 180,781 + -0.9 180,781 + -2.3 180,782 - -0.8 180,782 - +0.4 180,782 - -0.8 180,782 - -0.1 180,808 + -0.0 180,809 - -0.8 180,896 + -0.2
Or see this region's nucleotide sequence