Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06342

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
108,087	+				-0.2
108,087	+				-0.8
108,088	-				-1.3
108,088	-				-0.5
108,130	+				-2.7
108,130	+				-0.9
108,172	+				+0.2
108,172	+				-0.0
108,173	-				+0.8
108,173	-				-2.5
108,173	-				-1.2
108,173	-				-0.2
108,175	+				-0.8
108,175	+				+0.5
108,319	+		MPMX19_06340	0.37	-0.9
108,319	+		MPMX19_06340	0.37	+0.5
108,320	-		MPMX19_06340	0.37	+0.6
108,344	+		MPMX19_06340	0.53	-0.2
108,344	+		MPMX19_06340	0.53	-0.3
108,345	-		MPMX19_06340	0.54	-1.4
108,345	-		MPMX19_06340	0.54	+1.5
108,345	-		MPMX19_06340	0.54	-1.9
108,348	+		MPMX19_06340	0.56	-0.1
108,349	-		MPMX19_06340	0.57	+0.5
108,485	+				-0.1
108,485	+				-1.7
108,485	+				+0.1
108,486	-				-0.4
108,486	-				-0.0
108,606	+		MPMX19_06341	0.34	+1.2
108,606	+		MPMX19_06341	0.34	+0.2
108,606	+		MPMX19_06341	0.34	-1.5
108,606	+		MPMX19_06341	0.34	+0.8
108,606	+		MPMX19_06341	0.34	-0.7
108,606	+		MPMX19_06341	0.34	+0.2
108,606	+		MPMX19_06341	0.34	+1.6
108,606	+		MPMX19_06341	0.34	-1.3
108,607	-		MPMX19_06341	0.34	-0.8
108,607	-		MPMX19_06341	0.34	+1.8
108,607	-		MPMX19_06341	0.34	-0.5
108,607	-		MPMX19_06341	0.34	+0.5
108,607	-		MPMX19_06341	0.34	-1.0
108,607	-		MPMX19_06341	0.34	-0.8
108,607	-		MPMX19_06341	0.34	-0.3
108,607	-		MPMX19_06341	0.34	-1.0
108,825	-				+0.3
108,832	-				+1.8
108,855	+				+0.3
108,855	+				-0.9
108,859	+				+0.3
108,879	-				-1.4
108,879	-				+0.1
108,934	-				-1.4
108,987	+				+0.3
108,988	-				+1.8
108,988	-				+0.6
109,011	+		MPMX19_06342	0.11	-0.5
109,011	+		MPMX19_06342	0.11	-0.8
109,011	+		MPMX19_06342	0.11	-0.8
109,011	+		MPMX19_06342	0.11	+0.8
109,012	-		MPMX19_06342	0.11	-0.0
109,136	+		MPMX19_06342	0.57	-0.2
109,136	+		MPMX19_06342	0.57	+0.4
109,136	+		MPMX19_06342	0.57	-2.1
109,136	+		MPMX19_06342	0.57	-0.6
109,136	+		MPMX19_06342	0.57	-0.5
109,136	+		MPMX19_06342	0.57	+0.9
109,136	+		MPMX19_06342	0.57	+0.8
109,136	+		MPMX19_06342	0.57	-0.0
109,136	+		MPMX19_06342	0.57	-0.5
109,136	+		MPMX19_06342	0.57	-0.2
109,136	+		MPMX19_06342	0.57	-0.2
109,136	+		MPMX19_06342	0.57	-1.0
109,137	-		MPMX19_06342	0.57	+1.2
109,137	-		MPMX19_06342	0.57	+0.4
109,137	-		MPMX19_06342	0.57	-1.3
109,137	-		MPMX19_06342	0.57	+1.0
109,137	-		MPMX19_06342	0.57	-0.5
109,137	-		MPMX19_06342	0.57	+0.0
109,137	-		MPMX19_06342	0.57	-0.4
109,137	-		MPMX19_06342	0.57	+0.7
109,137	-		MPMX19_06342	0.57	+0.2
109,137	-		MPMX19_06342	0.57	-2.3
109,137	-		MPMX19_06342	0.57	+0.6
109,137	-		MPMX19_06342	0.57	-1.0
109,186	+		MPMX19_06342	0.76	+0.4
109,186	+		MPMX19_06342	0.76	+0.5
109,186	+		MPMX19_06342	0.76	+1.6
109,186	+		MPMX19_06342	0.76	+0.2
109,186	+		MPMX19_06342	0.76	+0.4
109,186	+		MPMX19_06342	0.76	+2.1
109,186	+		MPMX19_06342	0.76	-1.5
109,186	+		MPMX19_06342	0.76	-0.0
109,186	+		MPMX19_06342	0.76	+0.8
109,186	+		MPMX19_06342	0.76	+0.4
109,186	+		MPMX19_06342	0.76	-0.7
109,186	+		MPMX19_06342	0.76	-0.2
109,186	+		MPMX19_06342	0.76	-0.4
109,186	+		MPMX19_06342	0.76	-0.2
109,186	+		MPMX19_06342	0.76	+0.1
109,186	+		MPMX19_06342	0.76	-1.2
109,186	+		MPMX19_06342	0.76	+0.1
109,186	+		MPMX19_06342	0.76	-0.7
109,186	+		MPMX19_06342	0.76	-1.4
109,187	-		MPMX19_06342	0.76	-0.2
109,187	-		MPMX19_06342	0.76	+0.1
109,187	-		MPMX19_06342	0.76	+0.3
109,187	-		MPMX19_06342	0.76	-0.6
109,187	-		MPMX19_06342	0.76	-0.2
109,187	-		MPMX19_06342	0.76	-0.1
109,187	-		MPMX19_06342	0.76	-0.2
109,187	-		MPMX19_06342	0.76	+0.1
109,187	-		MPMX19_06342	0.76	-0.1
109,188	+		MPMX19_06342	0.76	+0.6
109,188	+		MPMX19_06342	0.76	-0.4
109,188	+		MPMX19_06342	0.76	+0.8
109,188	+		MPMX19_06342	0.76	+0.1
109,189	-		MPMX19_06342	0.77	+0.5
109,189	-		MPMX19_06342	0.77	+1.0
109,189	-		MPMX19_06342	0.77	+0.2
109,189	-		MPMX19_06342	0.77	-0.5
109,189	-		MPMX19_06342	0.77	+0.4
109,249	+				+0.2
109,250	-				+1.2
109,342	+				-0.4
109,342	+				-0.5
109,342	+				-0.7
109,342	+				-0.2
109,342	+				+0.2
109,342	+				-0.0
109,342	+				-0.0
109,343	-				-2.1
109,343	-				-0.9
109,343	-				+0.1
109,343	-				+0.6
109,343	-				-0.9
109,343	-				-1.0
109,718	+		MPMX19_06343	0.31	+0.4
109,718	+		MPMX19_06343	0.31	-2.0
109,718	+		MPMX19_06343	0.31	-0.5
109,718	+		MPMX19_06343	0.31	-0.7
109,719	-		MPMX19_06343	0.31	-1.8
109,719	-		MPMX19_06343	0.31	+0.8
109,719	-		MPMX19_06343	0.31	-0.4
109,719	-		MPMX19_06343	0.31	+0.2
109,719	-		MPMX19_06343	0.31	-1.8
109,719	-		MPMX19_06343	0.31	-0.7
109,784	+		MPMX19_06343	0.37	+0.3
109,784	+		MPMX19_06343	0.37	-0.2
109,784	+		MPMX19_06343	0.37	-0.4
109,785	-		MPMX19_06343	0.37	-1.0
109,785	-		MPMX19_06343	0.37	-0.6
109,785	-		MPMX19_06343	0.37	+0.4
109,785	-		MPMX19_06343	0.37	+0.2
109,785	-		MPMX19_06343	0.37	+0.5
109,785	-		MPMX19_06343	0.37	-0.4
109,785	-		MPMX19_06343	0.37	-2.1
109,785	-		MPMX19_06343	0.37	-1.9
110,006	-		MPMX19_06343	0.56	-0.2
110,183	+		MPMX19_06343	0.70	-1.0
110,183	+		MPMX19_06343	0.70	-1.5
110,183	+		MPMX19_06343	0.70	-1.0
110,183	+		MPMX19_06343	0.70	-1.0
110,183	+		MPMX19_06343	0.70	+1.2
110,183	+		MPMX19_06343	0.70	+1.1
110,183	+		MPMX19_06343	0.70	+0.1
110,183	+		MPMX19_06343	0.70	-0.1
110,183	+		MPMX19_06343	0.70	-1.5
110,183	+		MPMX19_06343	0.70	-0.0
110,183	+		MPMX19_06343	0.70	-0.6
110,183	+		MPMX19_06343	0.70	-0.9
110,184	-		MPMX19_06343	0.71	-0.2
110,184	-		MPMX19_06343	0.71	-0.8
110,184	-		MPMX19_06343	0.71	-0.1
110,184	-		MPMX19_06343	0.71	-1.5
110,184	-		MPMX19_06343	0.71	-0.6
110,184	-		MPMX19_06343	0.71	-1.1
110,184	-		MPMX19_06343	0.71	-1.0
110,184	-		MPMX19_06343	0.71	-0.7
110,188	+		MPMX19_06343	0.71	+0.8
110,188	+		MPMX19_06343	0.71	-1.1
110,189	-		MPMX19_06343	0.71	-1.8