Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05681 and MPMX19_05682 are separated by 113 nucleotides MPMX19_05682 and MPMX19_05683 are separated by 48 nucleotides MPMX19_05683 and MPMX19_05684 are separated by 71 nucleotides MPMX19_05684 and MPMX19_05685 overlap by 4 nucleotides
MPMX19_05681: MPMX19_05681 - Cold shock protein CspA, at 399,412 to 399,621
_05681
MPMX19_05682: MPMX19_05682 - hypothetical protein, at 399,735 to 399,947
_05682
MPMX19_05683: MPMX19_05683 - hypothetical protein, at 399,996 to 400,220
_05683
MPMX19_05684: MPMX19_05684 - Chemotaxis protein methyltransferase 1, at 400,292 to 401,131
_05684
MPMX19_05685: MPMX19_05685 - Protein-glutamate methylesterase/protein-glutamine glutaminase 2, at 401,128 to 402,294
_05685
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 399.399 kb on - strand at 399.559 kb on + strand, within MPMX19_05681 at 399.559 kb on + strand, within MPMX19_05681 at 399.560 kb on - strand, within MPMX19_05681 at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.981 kb on + strand at 399.982 kb on - strand at 399.982 kb on - strand at 399.982 kb on - strand at 400.053 kb on + strand, within MPMX19_05683 at 400.053 kb on + strand, within MPMX19_05683 at 400.053 kb on + strand, within MPMX19_05683 at 400.054 kb on - strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.293 kb on + strand at 400.293 kb on + strand at 400.293 kb on + strand at 400.294 kb on - strand at 400.335 kb on + strand at 400.335 kb on + strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 399,399 - -1.4 399,559 + MPMX19_05681 0.70 -0.8 399,559 + MPMX19_05681 0.70 +1.3 399,560 - MPMX19_05681 0.70 +0.1 399,753 + +0.1 399,753 + -1.1 399,753 + -0.8 399,753 + -0.1 399,753 + -2.4 399,753 + -0.1 399,753 + +0.1 399,753 + +0.1 399,753 + -1.1 399,753 + -0.3 399,754 - -1.9 399,754 - -0.8 399,754 - -2.1 399,754 - -0.9 399,754 - -0.7 399,981 + -1.6 399,982 - -1.2 399,982 - -1.7 399,982 - -0.7 400,053 + MPMX19_05683 0.25 -0.3 400,053 + MPMX19_05683 0.25 -0.3 400,053 + MPMX19_05683 0.25 -1.8 400,054 - MPMX19_05683 0.26 -2.4 400,137 + MPMX19_05683 0.63 +0.7 400,137 + MPMX19_05683 0.63 -0.5 400,137 + MPMX19_05683 0.63 +0.0 400,137 + MPMX19_05683 0.63 -0.1 400,137 + MPMX19_05683 0.63 +0.7 400,137 + MPMX19_05683 0.63 -0.5 400,137 + MPMX19_05683 0.63 -0.8 400,137 + MPMX19_05683 0.63 +0.7 400,138 - MPMX19_05683 0.63 -0.2 400,138 - MPMX19_05683 0.63 +0.3 400,138 - MPMX19_05683 0.63 +0.7 400,138 - MPMX19_05683 0.63 -1.8 400,138 - MPMX19_05683 0.63 -0.2 400,138 - MPMX19_05683 0.63 -0.5 400,293 + -0.7 400,293 + -0.4 400,293 + +0.3 400,294 - -1.3 400,335 + +0.1 400,335 + -0.8 400,336 - -1.7 400,336 - -0.1 400,336 - +0.1 400,336 - -0.5 400,369 + -2.4 400,369 + +0.1 400,369 + -0.1 400,369 + -0.1 400,369 + -1.4 400,369 + -0.3 400,370 - -1.2 400,370 - -1.5 400,370 - -1.8 400,370 - -0.2 400,407 + MPMX19_05684 0.14 -0.7 400,407 + MPMX19_05684 0.14 -1.2 400,407 + MPMX19_05684 0.14 -0.7 400,407 + MPMX19_05684 0.14 -1.0 400,407 + MPMX19_05684 0.14 -0.8 400,407 + MPMX19_05684 0.14 -0.8 400,407 + MPMX19_05684 0.14 -2.2 400,407 + MPMX19_05684 0.14 -1.8 400,408 - MPMX19_05684 0.14 -2.3 400,408 - MPMX19_05684 0.14 -1.5 400,408 - MPMX19_05684 0.14 -1.9 400,408 - MPMX19_05684 0.14 +1.1 400,479 + MPMX19_05684 0.22 -1.1 400,479 + MPMX19_05684 0.22 -0.5 400,479 + MPMX19_05684 0.22 -2.2 400,479 + MPMX19_05684 0.22 -1.5 400,479 + MPMX19_05684 0.22 -0.7 400,479 + MPMX19_05684 0.22 -1.2 400,479 + MPMX19_05684 0.22 -0.3 400,480 - MPMX19_05684 0.22 -1.3 400,480 - MPMX19_05684 0.22 +0.3 400,480 - MPMX19_05684 0.22 -1.8 400,480 - MPMX19_05684 0.22 -0.2 400,480 - MPMX19_05684 0.22 -1.1 400,668 + MPMX19_05684 0.45 -0.2 400,668 + MPMX19_05684 0.45 -0.3 400,668 + MPMX19_05684 0.45 -1.5 400,668 + MPMX19_05684 0.45 -0.7 400,668 + MPMX19_05684 0.45 +0.9 400,668 + MPMX19_05684 0.45 -1.0 400,668 + MPMX19_05684 0.45 -1.8 400,668 + MPMX19_05684 0.45 +0.7 400,669 - MPMX19_05684 0.45 -1.2 400,669 - MPMX19_05684 0.45 -0.9 400,669 - MPMX19_05684 0.45 -1.4 400,669 - MPMX19_05684 0.45 -0.3 400,669 - MPMX19_05684 0.45 +0.2 400,669 - MPMX19_05684 0.45 -1.8 400,782 + MPMX19_05684 0.58 -0.4 400,782 + MPMX19_05684 0.58 +0.3 400,782 + MPMX19_05684 0.58 -0.3 400,782 + MPMX19_05684 0.58 -1.8 400,782 + MPMX19_05684 0.58 -1.6 400,782 + MPMX19_05684 0.58 -0.3 400,783 - MPMX19_05684 0.58 -1.3 400,783 - MPMX19_05684 0.58 -3.2 400,783 - MPMX19_05684 0.58 -1.5 400,783 - MPMX19_05684 0.58 -1.0 400,783 - MPMX19_05684 0.58 +0.4 400,783 - MPMX19_05684 0.58 -2.2 401,052 + -1.0 401,052 + -1.8 401,052 + -0.6 401,052 + -1.1 401,052 + +0.4 401,052 + -0.7 401,052 + -0.1 401,052 + -0.8 401,052 + -1.5 401,052 + -1.3 401,052 + -1.7 401,052 + +0.1 401,052 + -0.7 401,052 + +0.4 401,052 + -2.2 401,052 + -1.1 401,052 + -0.3 401,052 + -0.9 401,053 - -2.1 401,053 - -0.7 401,053 - -1.2 401,053 - -1.7 401,053 - -0.3 401,053 - -0.6 401,053 - -0.1 401,053 - -2.4 401,469 + MPMX19_05685 0.29 -0.8 401,469 + MPMX19_05685 0.29 +0.3 401,469 + MPMX19_05685 0.29 -0.9 401,469 + MPMX19_05685 0.29 +0.2 401,469 + MPMX19_05685 0.29 -1.6 401,469 + MPMX19_05685 0.29 -1.7 401,469 + MPMX19_05685 0.29 -0.7 401,469 + MPMX19_05685 0.29 -0.5 401,469 + MPMX19_05685 0.29 -0.7 401,469 + MPMX19_05685 0.29 -1.8 401,470 - MPMX19_05685 0.29 -0.4 401,470 - MPMX19_05685 0.29 -0.7 401,470 - MPMX19_05685 0.29 -0.6 401,470 - MPMX19_05685 0.29 +0.9 401,470 - MPMX19_05685 0.29 -1.6 401,470 - MPMX19_05685 0.29 -1.5 401,470 - MPMX19_05685 0.29 +1.1 401,470 - MPMX19_05685 0.29 -0.9 401,470 - MPMX19_05685 0.29 -1.1 401,470 - MPMX19_05685 0.29 -0.5 401,470 - MPMX19_05685 0.29 -0.3 401,470 - MPMX19_05685 0.29 -1.2 401,470 - MPMX19_05685 0.29 -3.0 401,470 - MPMX19_05685 0.29 -0.7 401,470 - MPMX19_05685 0.29 -0.3 401,470 - MPMX19_05685 0.29 -1.1 401,470 - MPMX19_05685 0.29 -1.0 401,470 - MPMX19_05685 0.29 +0.4 401,470 - MPMX19_05685 0.29 -0.2 401,492 + MPMX19_05685 0.31 -0.7 401,492 + MPMX19_05685 0.31 -0.3 401,492 + MPMX19_05685 0.31 -2.4 401,492 + MPMX19_05685 0.31 -1.5 401,492 + MPMX19_05685 0.31 -0.2 401,492 + MPMX19_05685 0.31 -0.5 401,492 + MPMX19_05685 0.31 -2.7 401,492 + MPMX19_05685 0.31 +0.1 401,492 + MPMX19_05685 0.31 -0.1 401,492 + MPMX19_05685 0.31 -2.4 401,492 + MPMX19_05685 0.31 -0.4 401,492 + MPMX19_05685 0.31 -1.8 401,492 + MPMX19_05685 0.31 -0.3 401,493 - MPMX19_05685 0.31 -1.9 401,493 - MPMX19_05685 0.31 -1.1 401,493 - MPMX19_05685 0.31 -0.4 401,493 - MPMX19_05685 0.31 -1.4 401,493 - MPMX19_05685 0.31 -2.8 401,493 - MPMX19_05685 0.31 -1.9 401,493 - MPMX19_05685 0.31 -1.1 401,493 - MPMX19_05685 0.31 -1.3 401,493 - MPMX19_05685 0.31 -1.9 401,493 - MPMX19_05685 0.31 +0.7 401,493 - MPMX19_05685 0.31 -0.7 401,493 - MPMX19_05685 0.31 -3.1 401,493 - MPMX19_05685 0.31 -0.6 401,493 - MPMX19_05685 0.31 -0.7 401,493 - MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 -1.1 401,930 + MPMX19_05685 0.69 -1.1 401,930 + MPMX19_05685 0.69 -1.5 401,930 + MPMX19_05685 0.69 +0.1 401,931 - MPMX19_05685 0.69 -1.1 401,931 - MPMX19_05685 0.69 +0.7 401,931 - MPMX19_05685 0.69 +0.9 401,931 - MPMX19_05685 0.69 -1.0 401,931 - MPMX19_05685 0.69 +1.4 401,931 - MPMX19_05685 0.69 +0.1
Or see this region's nucleotide sequence