Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05090

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05089 and MPMX19_05090 overlap by 4 nucleotidesMPMX19_05090 and MPMX19_05091 are separated by 4 nucleotidesMPMX19_05091 and MPMX19_05092 are separated by 27 nucleotides MPMX19_05089: MPMX19_05089 - Acetyl-CoA acetyltransferase, at 578,370 to 579,539 _05089 MPMX19_05090: MPMX19_05090 - putative acyl--CoA ligase YhfT, at 579,536 to 581,035 _05090 MPMX19_05091: MPMX19_05091 - Biotin transporter BioY, at 581,040 to 581,588 _05091 MPMX19_05092: MPMX19_05092 - Energy-coupling factor transporter transmembrane protein EcfT, at 581,616 to 582,266 _05092 Position (kb) 579 580 581 582Strain fitness (log2 ratio) -2 -1 0 1 2at 578.897 kb on + strand, within MPMX19_05089at 578.897 kb on + strand, within MPMX19_05089at 579.038 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.130 kb on + strand, within MPMX19_05089at 579.130 kb on + strand, within MPMX19_05089at 579.131 kb on - strand, within MPMX19_05089at 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.765 kb on + strand, within MPMX19_05090at 579.766 kb on - strand, within MPMX19_05090at 579.766 kb on - strand, within MPMX19_05090at 579.871 kb on + strand, within MPMX19_05090at 579.871 kb on + strand, within MPMX19_05090at 579.871 kb on + strand, within MPMX19_05090at 579.872 kb on - strand, within MPMX19_05090at 579.872 kb on - strand, within MPMX19_05090at 579.925 kb on - strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.988 kb on - strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.170 kb on + strand, within MPMX19_05090at 580.170 kb on + strand, within MPMX19_05090at 580.171 kb on - strand, within MPMX19_05090at 580.171 kb on - strand, within MPMX19_05090at 580.171 kb on - strand, within MPMX19_05090at 580.322 kb on + strand, within MPMX19_05090at 580.437 kb on + strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090at 580.705 kb on - strand, within MPMX19_05090at 580.826 kb on + strand, within MPMX19_05090at 580.826 kb on + strand, within MPMX19_05090at 580.826 kb on + strand, within MPMX19_05090at 580.827 kb on - strand, within MPMX19_05090at 580.827 kb on - strand, within MPMX19_05090at 580.827 kb on - strand, within MPMX19_05090at 580.905 kb on + strandat 580.905 kb on + strandat 580.905 kb on + strandat 580.906 kb on - strandat 580.906 kb on - strandat 580.906 kb on - strandat 581.001 kb on + strandat 581.001 kb on + strandat 581.675 kb on - strandat 581.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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578,897 + MPMX19_05089 0.45 +0.4
578,897 + MPMX19_05089 0.45 +0.6
579,038 + MPMX19_05089 0.57 +0.9
579,052 + MPMX19_05089 0.58 -0.0
579,052 + MPMX19_05089 0.58 -0.9
579,052 + MPMX19_05089 0.58 -0.5
579,052 + MPMX19_05089 0.58 -1.7
579,052 + MPMX19_05089 0.58 +1.2
579,053 - MPMX19_05089 0.58 +1.2
579,053 - MPMX19_05089 0.58 -1.4
579,053 - MPMX19_05089 0.58 -0.4
579,053 - MPMX19_05089 0.58 +0.6
579,130 + MPMX19_05089 0.65 -0.2
579,130 + MPMX19_05089 0.65 -1.3
579,131 - MPMX19_05089 0.65 +0.5
579,666 + -0.0
579,666 + -0.6
579,666 + -0.1
579,666 + -0.3
579,666 + -0.5
579,666 + -0.6
579,667 - -1.9
579,667 - -0.1
579,667 - -0.4
579,667 - -0.0
579,667 - +0.3
579,667 - +0.4
579,667 - -1.2
579,667 - -1.1
579,667 - -0.6
579,667 - -1.0
579,667 - -0.9
579,667 - +1.0
579,667 - -1.0
579,667 - +0.4
579,765 + MPMX19_05090 0.15 -0.5
579,766 - MPMX19_05090 0.15 +1.0
579,766 - MPMX19_05090 0.15 -0.2
579,871 + MPMX19_05090 0.22 -0.3
579,871 + MPMX19_05090 0.22 -0.5
579,871 + MPMX19_05090 0.22 -1.0
579,872 - MPMX19_05090 0.22 +0.5
579,872 - MPMX19_05090 0.22 -1.6
579,925 - MPMX19_05090 0.26 -0.1
579,987 + MPMX19_05090 0.30 +0.2
579,987 + MPMX19_05090 0.30 -0.7
579,987 + MPMX19_05090 0.30 +0.8
579,987 + MPMX19_05090 0.30 -1.3
579,988 - MPMX19_05090 0.30 +0.2
580,167 + MPMX19_05090 0.42 -0.8
580,167 + MPMX19_05090 0.42 -1.2
580,167 + MPMX19_05090 0.42 +0.8
580,167 + MPMX19_05090 0.42 -0.8
580,168 - MPMX19_05090 0.42 -1.1
580,168 - MPMX19_05090 0.42 -0.2
580,168 - MPMX19_05090 0.42 -0.3
580,168 - MPMX19_05090 0.42 -0.9
580,168 - MPMX19_05090 0.42 -0.1
580,170 + MPMX19_05090 0.42 -1.9
580,170 + MPMX19_05090 0.42 +0.6
580,171 - MPMX19_05090 0.42 +0.4
580,171 - MPMX19_05090 0.42 +0.1
580,171 - MPMX19_05090 0.42 -1.0
580,322 + MPMX19_05090 0.52 -0.4
580,437 + MPMX19_05090 0.60 +0.5
580,438 - MPMX19_05090 0.60 -0.2
580,438 - MPMX19_05090 0.60 -0.9
580,438 - MPMX19_05090 0.60 -0.5
580,438 - MPMX19_05090 0.60 -0.5
580,705 - MPMX19_05090 0.78 +0.2
580,826 + MPMX19_05090 0.86 -0.7
580,826 + MPMX19_05090 0.86 -0.6
580,826 + MPMX19_05090 0.86 -2.1
580,827 - MPMX19_05090 0.86 -1.7
580,827 - MPMX19_05090 0.86 -2.4
580,827 - MPMX19_05090 0.86 +1.8
580,905 + -0.2
580,905 + -0.1
580,905 + +1.2
580,906 - +0.2
580,906 - +0.8
580,906 - +1.1
581,001 + +0.4
581,001 + -2.0
581,675 - -0.1
581,675 - -2.1

Or see this region's nucleotide sequence