Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04301 and MPMX19_04302 overlap by 4 nucleotides MPMX19_04302 and MPMX19_04303 are separated by 45 nucleotides
MPMX19_04301: MPMX19_04301 - hypothetical protein, at 662,240 to 663,193
_04301
MPMX19_04302: MPMX19_04302 - hypothetical protein, at 663,190 to 664,044
_04302
MPMX19_04303: MPMX19_04303 - hypothetical protein, at 664,090 to 664,965
_04303
Position (kb)
663
664
665 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 662.196 kb on - strand at 662.198 kb on + strand at 662.198 kb on + strand at 662.198 kb on + strand at 662.199 kb on - strand at 662.199 kb on - strand at 662.199 kb on - strand at 662.199 kb on - strand at 662.199 kb on - strand at 662.199 kb on - strand at 662.199 kb on - strand at 662.207 kb on + strand at 662.208 kb on - strand at 662.304 kb on + strand at 662.305 kb on - strand at 662.305 kb on - strand at 662.697 kb on + strand, within MPMX19_04301 at 662.697 kb on + strand, within MPMX19_04301 at 662.697 kb on + strand, within MPMX19_04301 at 662.697 kb on + strand, within MPMX19_04301 at 662.697 kb on + strand, within MPMX19_04301 at 662.697 kb on + strand, within MPMX19_04301 at 662.697 kb on + strand, within MPMX19_04301 at 662.698 kb on - strand, within MPMX19_04301 at 662.698 kb on - strand, within MPMX19_04301 at 662.698 kb on - strand, within MPMX19_04301 at 662.698 kb on - strand, within MPMX19_04301 at 662.698 kb on - strand, within MPMX19_04301 at 662.698 kb on - strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.757 kb on + strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.758 kb on - strand, within MPMX19_04301 at 662.859 kb on + strand, within MPMX19_04301 at 662.859 kb on + strand, within MPMX19_04301 at 662.860 kb on - strand, within MPMX19_04301 at 662.860 kb on - strand, within MPMX19_04301 at 662.943 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.063 kb on + strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.064 kb on - strand, within MPMX19_04301 at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.099 kb on + strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.100 kb on - strand at 663.452 kb on + strand, within MPMX19_04302 at 663.452 kb on + strand, within MPMX19_04302 at 663.452 kb on + strand, within MPMX19_04302 at 663.453 kb on - strand, within MPMX19_04302 at 663.453 kb on - strand, within MPMX19_04302 at 663.453 kb on - strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.590 kb on + strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.591 kb on - strand, within MPMX19_04302 at 663.725 kb on + strand, within MPMX19_04302 at 663.725 kb on + strand, within MPMX19_04302 at 663.725 kb on + strand, within MPMX19_04302 at 663.725 kb on + strand, within MPMX19_04302 at 663.725 kb on + strand, within MPMX19_04302 at 663.726 kb on - strand, within MPMX19_04302 at 663.726 kb on - strand, within MPMX19_04302 at 663.726 kb on - strand, within MPMX19_04302 at 663.726 kb on - strand, within MPMX19_04302 at 663.749 kb on + strand, within MPMX19_04302 at 663.917 kb on + strand, within MPMX19_04302 at 663.917 kb on + strand, within MPMX19_04302 at 663.917 kb on + strand, within MPMX19_04302 at 663.918 kb on - strand, within MPMX19_04302 at 663.918 kb on - strand, within MPMX19_04302 at 663.918 kb on - strand, within MPMX19_04302 at 663.918 kb on - strand, within MPMX19_04302 at 664.023 kb on + strand at 664.023 kb on + strand at 664.023 kb on + strand at 664.023 kb on + strand at 664.024 kb on - strand at 664.024 kb on - strand at 664.024 kb on - strand at 664.024 kb on - strand at 664.062 kb on + strand at 664.062 kb on + strand at 664.062 kb on + strand at 664.063 kb on - strand at 664.128 kb on - strand at 664.128 kb on - strand at 664.128 kb on - strand at 664.128 kb on - strand at 664.193 kb on + strand, within MPMX19_04303 at 664.193 kb on + strand, within MPMX19_04303 at 664.193 kb on + strand, within MPMX19_04303 at 664.193 kb on + strand, within MPMX19_04303 at 664.193 kb on + strand, within MPMX19_04303 at 664.193 kb on + strand, within MPMX19_04303 at 664.194 kb on - strand, within MPMX19_04303 at 664.194 kb on - strand, within MPMX19_04303 at 664.194 kb on - strand, within MPMX19_04303 at 664.194 kb on - strand, within MPMX19_04303 at 664.194 kb on - strand, within MPMX19_04303 at 664.553 kb on + strand, within MPMX19_04303 at 664.554 kb on - strand, within MPMX19_04303 at 664.554 kb on - strand, within MPMX19_04303 at 664.604 kb on + strand, within MPMX19_04303 at 664.605 kb on - strand, within MPMX19_04303 at 664.605 kb on - strand, within MPMX19_04303 at 664.605 kb on - strand, within MPMX19_04303 at 664.605 kb on - strand, within MPMX19_04303 at 664.699 kb on + strand, within MPMX19_04303 at 664.700 kb on - strand, within MPMX19_04303 at 664.700 kb on - strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.709 kb on + strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.710 kb on - strand, within MPMX19_04303 at 664.818 kb on - strand, within MPMX19_04303 at 665.014 kb on - strand at 665.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 662,196 - -0.1 662,198 + -1.5 662,198 + -0.1 662,198 + +1.1 662,199 - -0.3 662,199 - -0.0 662,199 - -0.9 662,199 - -0.9 662,199 - +0.3 662,199 - -1.0 662,199 - -0.4 662,207 + -0.4 662,208 - -0.8 662,304 + -0.4 662,305 - +0.2 662,305 - +0.6 662,697 + MPMX19_04301 0.48 -0.1 662,697 + MPMX19_04301 0.48 +0.8 662,697 + MPMX19_04301 0.48 -1.2 662,697 + MPMX19_04301 0.48 -0.8 662,697 + MPMX19_04301 0.48 +0.7 662,697 + MPMX19_04301 0.48 -0.7 662,697 + MPMX19_04301 0.48 +0.8 662,698 - MPMX19_04301 0.48 +1.4 662,698 - MPMX19_04301 0.48 +0.5 662,698 - MPMX19_04301 0.48 -2.7 662,698 - MPMX19_04301 0.48 -0.0 662,698 - MPMX19_04301 0.48 -0.3 662,698 - MPMX19_04301 0.48 +0.6 662,757 + MPMX19_04301 0.54 -0.6 662,757 + MPMX19_04301 0.54 +0.9 662,757 + MPMX19_04301 0.54 -0.7 662,757 + MPMX19_04301 0.54 -0.3 662,757 + MPMX19_04301 0.54 -0.3 662,757 + MPMX19_04301 0.54 -0.2 662,757 + MPMX19_04301 0.54 -0.5 662,757 + MPMX19_04301 0.54 +0.2 662,757 + MPMX19_04301 0.54 +0.5 662,757 + MPMX19_04301 0.54 +0.6 662,757 + MPMX19_04301 0.54 -0.5 662,757 + MPMX19_04301 0.54 -0.0 662,757 + MPMX19_04301 0.54 +1.0 662,757 + MPMX19_04301 0.54 -0.5 662,758 - MPMX19_04301 0.54 -1.3 662,758 - MPMX19_04301 0.54 -0.2 662,758 - MPMX19_04301 0.54 +0.9 662,758 - MPMX19_04301 0.54 -0.8 662,758 - MPMX19_04301 0.54 -0.9 662,758 - MPMX19_04301 0.54 -1.3 662,758 - MPMX19_04301 0.54 -0.8 662,758 - MPMX19_04301 0.54 -1.4 662,859 + MPMX19_04301 0.65 -0.3 662,859 + MPMX19_04301 0.65 -1.5 662,860 - MPMX19_04301 0.65 -0.5 662,860 - MPMX19_04301 0.65 +0.8 662,943 + MPMX19_04301 0.74 -0.7 663,063 + MPMX19_04301 0.86 -0.8 663,063 + MPMX19_04301 0.86 +0.1 663,063 + MPMX19_04301 0.86 +0.8 663,063 + MPMX19_04301 0.86 -0.6 663,063 + MPMX19_04301 0.86 +0.1 663,063 + MPMX19_04301 0.86 +0.3 663,063 + MPMX19_04301 0.86 +1.0 663,063 + MPMX19_04301 0.86 -1.9 663,063 + MPMX19_04301 0.86 -0.6 663,063 + MPMX19_04301 0.86 -0.4 663,063 + MPMX19_04301 0.86 -1.0 663,063 + MPMX19_04301 0.86 +1.2 663,063 + MPMX19_04301 0.86 -0.3 663,063 + MPMX19_04301 0.86 +0.6 663,063 + MPMX19_04301 0.86 -0.4 663,063 + MPMX19_04301 0.86 +0.5 663,063 + MPMX19_04301 0.86 +1.0 663,063 + MPMX19_04301 0.86 -0.2 663,063 + MPMX19_04301 0.86 -0.4 663,064 - MPMX19_04301 0.86 +0.2 663,064 - MPMX19_04301 0.86 -0.2 663,064 - MPMX19_04301 0.86 +0.2 663,064 - MPMX19_04301 0.86 -0.2 663,064 - MPMX19_04301 0.86 -0.5 663,064 - MPMX19_04301 0.86 +0.8 663,064 - MPMX19_04301 0.86 +0.3 663,064 - MPMX19_04301 0.86 -0.8 663,064 - MPMX19_04301 0.86 -1.4 663,064 - MPMX19_04301 0.86 +0.2 663,064 - MPMX19_04301 0.86 -0.1 663,064 - MPMX19_04301 0.86 +0.8 663,064 - MPMX19_04301 0.86 -0.1 663,064 - MPMX19_04301 0.86 -0.4 663,064 - MPMX19_04301 0.86 -0.5 663,064 - MPMX19_04301 0.86 -2.0 663,064 - MPMX19_04301 0.86 -0.4 663,064 - MPMX19_04301 0.86 -0.9 663,064 - MPMX19_04301 0.86 -0.3 663,064 - MPMX19_04301 0.86 -0.7 663,064 - MPMX19_04301 0.86 -0.5 663,099 + -1.5 663,099 + +0.2 663,099 + -1.0 663,099 + +0.2 663,099 + +0.6 663,099 + +0.7 663,099 + -0.9 663,099 + -0.9 663,099 + -0.1 663,099 + -0.4 663,099 + +0.2 663,099 + -0.7 663,100 - -0.3 663,100 - +0.1 663,100 - -0.6 663,100 - +0.2 663,100 - +0.3 663,100 - -0.5 663,100 - +0.1 663,100 - -0.8 663,100 - +0.4 663,100 - +0.5 663,100 - -0.8 663,100 - -1.3 663,100 - -0.8 663,100 - -1.0 663,100 - +0.8 663,100 - -0.0 663,100 - -0.2 663,100 - -1.0 663,100 - -0.7 663,100 - -2.4 663,100 - +0.2 663,100 - -0.0 663,100 - +0.3 663,452 + MPMX19_04302 0.31 -0.9 663,452 + MPMX19_04302 0.31 -0.7 663,452 + MPMX19_04302 0.31 +0.8 663,453 - MPMX19_04302 0.31 -0.0 663,453 - MPMX19_04302 0.31 +0.2 663,453 - MPMX19_04302 0.31 -2.4 663,590 + MPMX19_04302 0.47 -0.4 663,590 + MPMX19_04302 0.47 -1.1 663,590 + MPMX19_04302 0.47 -0.2 663,590 + MPMX19_04302 0.47 -0.1 663,590 + MPMX19_04302 0.47 -0.2 663,590 + MPMX19_04302 0.47 +0.2 663,590 + MPMX19_04302 0.47 +0.4 663,590 + MPMX19_04302 0.47 +1.6 663,590 + MPMX19_04302 0.47 +0.4 663,590 + MPMX19_04302 0.47 +0.1 663,590 + MPMX19_04302 0.47 +0.5 663,590 + MPMX19_04302 0.47 +0.3 663,590 + MPMX19_04302 0.47 -1.8 663,591 - MPMX19_04302 0.47 -0.2 663,591 - MPMX19_04302 0.47 -0.6 663,591 - MPMX19_04302 0.47 -0.5 663,591 - MPMX19_04302 0.47 -0.7 663,591 - MPMX19_04302 0.47 +0.3 663,591 - MPMX19_04302 0.47 +0.7 663,591 - MPMX19_04302 0.47 -0.1 663,591 - MPMX19_04302 0.47 +0.4 663,591 - MPMX19_04302 0.47 +0.1 663,591 - MPMX19_04302 0.47 +0.4 663,725 + MPMX19_04302 0.63 +0.2 663,725 + MPMX19_04302 0.63 +0.1 663,725 + MPMX19_04302 0.63 +0.6 663,725 + MPMX19_04302 0.63 -0.5 663,725 + MPMX19_04302 0.63 -2.0 663,726 - MPMX19_04302 0.63 -1.2 663,726 - MPMX19_04302 0.63 +0.5 663,726 - MPMX19_04302 0.63 -0.2 663,726 - MPMX19_04302 0.63 -1.0 663,749 + MPMX19_04302 0.65 +0.8 663,917 + MPMX19_04302 0.85 -0.3 663,917 + MPMX19_04302 0.85 +2.1 663,917 + MPMX19_04302 0.85 +1.2 663,918 - MPMX19_04302 0.85 -0.3 663,918 - MPMX19_04302 0.85 +0.3 663,918 - MPMX19_04302 0.85 -0.5 663,918 - MPMX19_04302 0.85 +0.1 664,023 + -0.4 664,023 + +0.6 664,023 + -0.2 664,023 + -1.6 664,024 - -1.1 664,024 - -1.0 664,024 - -0.4 664,024 - +0.5 664,062 + -0.0 664,062 + -1.8 664,062 + -2.3 664,063 - +0.4 664,128 - +0.0 664,128 - -0.3 664,128 - +0.0 664,128 - -0.3 664,193 + MPMX19_04303 0.12 -1.5 664,193 + MPMX19_04303 0.12 +0.2 664,193 + MPMX19_04303 0.12 -1.3 664,193 + MPMX19_04303 0.12 -0.8 664,193 + MPMX19_04303 0.12 -1.8 664,193 + MPMX19_04303 0.12 +0.7 664,194 - MPMX19_04303 0.12 +0.1 664,194 - MPMX19_04303 0.12 +1.1 664,194 - MPMX19_04303 0.12 -0.2 664,194 - MPMX19_04303 0.12 -0.1 664,194 - MPMX19_04303 0.12 -0.2 664,553 + MPMX19_04303 0.53 -2.0 664,554 - MPMX19_04303 0.53 +0.2 664,554 - MPMX19_04303 0.53 -0.3 664,604 + MPMX19_04303 0.59 -0.0 664,605 - MPMX19_04303 0.59 -0.2 664,605 - MPMX19_04303 0.59 -0.1 664,605 - MPMX19_04303 0.59 +0.1 664,605 - MPMX19_04303 0.59 +0.6 664,699 + MPMX19_04303 0.70 -0.8 664,700 - MPMX19_04303 0.70 +0.4 664,700 - MPMX19_04303 0.70 +0.5 664,709 + MPMX19_04303 0.71 +0.2 664,709 + MPMX19_04303 0.71 -0.2 664,709 + MPMX19_04303 0.71 -1.7 664,709 + MPMX19_04303 0.71 -1.5 664,709 + MPMX19_04303 0.71 +0.5 664,709 + MPMX19_04303 0.71 +0.8 664,709 + MPMX19_04303 0.71 -0.2 664,709 + MPMX19_04303 0.71 -1.2 664,709 + MPMX19_04303 0.71 -0.4 664,709 + MPMX19_04303 0.71 +0.2 664,709 + MPMX19_04303 0.71 +0.2 664,709 + MPMX19_04303 0.71 -0.8 664,710 - MPMX19_04303 0.71 -0.0 664,710 - MPMX19_04303 0.71 +0.8 664,710 - MPMX19_04303 0.71 +0.4 664,710 - MPMX19_04303 0.71 +0.6 664,710 - MPMX19_04303 0.71 -1.4 664,710 - MPMX19_04303 0.71 -0.5 664,710 - MPMX19_04303 0.71 -1.4 664,710 - MPMX19_04303 0.71 +0.7 664,710 - MPMX19_04303 0.71 -0.4 664,710 - MPMX19_04303 0.71 +0.2 664,710 - MPMX19_04303 0.71 +0.9 664,710 - MPMX19_04303 0.71 -0.3 664,710 - MPMX19_04303 0.71 +0.1 664,710 - MPMX19_04303 0.71 -0.2 664,710 - MPMX19_04303 0.71 -0.7 664,818 - MPMX19_04303 0.83 -0.8 665,014 - -0.0 665,014 - -0.4
Or see this region's nucleotide sequence