Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04302

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04301 and MPMX19_04302 overlap by 4 nucleotidesMPMX19_04302 and MPMX19_04303 are separated by 45 nucleotides MPMX19_04301: MPMX19_04301 - hypothetical protein, at 662,240 to 663,193 _04301 MPMX19_04302: MPMX19_04302 - hypothetical protein, at 663,190 to 664,044 _04302 MPMX19_04303: MPMX19_04303 - hypothetical protein, at 664,090 to 664,965 _04303 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2at 662.196 kb on - strandat 662.198 kb on + strandat 662.198 kb on + strandat 662.198 kb on + strandat 662.199 kb on - strandat 662.199 kb on - strandat 662.199 kb on - strandat 662.199 kb on - strandat 662.199 kb on - strandat 662.199 kb on - strandat 662.199 kb on - strandat 662.207 kb on + strandat 662.208 kb on - strandat 662.304 kb on + strandat 662.305 kb on - strandat 662.305 kb on - strandat 662.697 kb on + strand, within MPMX19_04301at 662.697 kb on + strand, within MPMX19_04301at 662.697 kb on + strand, within MPMX19_04301at 662.697 kb on + strand, within MPMX19_04301at 662.697 kb on + strand, within MPMX19_04301at 662.697 kb on + strand, within MPMX19_04301at 662.697 kb on + strand, within MPMX19_04301at 662.698 kb on - strand, within MPMX19_04301at 662.698 kb on - strand, within MPMX19_04301at 662.698 kb on - strand, within MPMX19_04301at 662.698 kb on - strand, within MPMX19_04301at 662.698 kb on - strand, within MPMX19_04301at 662.698 kb on - strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.757 kb on + strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.758 kb on - strand, within MPMX19_04301at 662.859 kb on + strand, within MPMX19_04301at 662.859 kb on + strand, within MPMX19_04301at 662.860 kb on - strand, within MPMX19_04301at 662.860 kb on - strand, within MPMX19_04301at 662.943 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.063 kb on + strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.064 kb on - strand, within MPMX19_04301at 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.099 kb on + strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.100 kb on - strandat 663.452 kb on + strand, within MPMX19_04302at 663.452 kb on + strand, within MPMX19_04302at 663.452 kb on + strand, within MPMX19_04302at 663.453 kb on - strand, within MPMX19_04302at 663.453 kb on - strand, within MPMX19_04302at 663.453 kb on - strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.590 kb on + strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.591 kb on - strand, within MPMX19_04302at 663.725 kb on + strand, within MPMX19_04302at 663.725 kb on + strand, within MPMX19_04302at 663.725 kb on + strand, within MPMX19_04302at 663.725 kb on + strand, within MPMX19_04302at 663.725 kb on + strand, within MPMX19_04302at 663.726 kb on - strand, within MPMX19_04302at 663.726 kb on - strand, within MPMX19_04302at 663.726 kb on - strand, within MPMX19_04302at 663.726 kb on - strand, within MPMX19_04302at 663.749 kb on + strand, within MPMX19_04302at 663.917 kb on + strand, within MPMX19_04302at 663.917 kb on + strand, within MPMX19_04302at 663.917 kb on + strand, within MPMX19_04302at 663.918 kb on - strand, within MPMX19_04302at 663.918 kb on - strand, within MPMX19_04302at 663.918 kb on - strand, within MPMX19_04302at 663.918 kb on - strand, within MPMX19_04302at 664.023 kb on + strandat 664.023 kb on + strandat 664.023 kb on + strandat 664.023 kb on + strandat 664.024 kb on - strandat 664.024 kb on - strandat 664.024 kb on - strandat 664.024 kb on - strandat 664.062 kb on + strandat 664.062 kb on + strandat 664.062 kb on + strandat 664.063 kb on - strandat 664.128 kb on - strandat 664.128 kb on - strandat 664.128 kb on - strandat 664.128 kb on - strandat 664.193 kb on + strand, within MPMX19_04303at 664.193 kb on + strand, within MPMX19_04303at 664.193 kb on + strand, within MPMX19_04303at 664.193 kb on + strand, within MPMX19_04303at 664.193 kb on + strand, within MPMX19_04303at 664.193 kb on + strand, within MPMX19_04303at 664.194 kb on - strand, within MPMX19_04303at 664.194 kb on - strand, within MPMX19_04303at 664.194 kb on - strand, within MPMX19_04303at 664.194 kb on - strand, within MPMX19_04303at 664.194 kb on - strand, within MPMX19_04303at 664.553 kb on + strand, within MPMX19_04303at 664.554 kb on - strand, within MPMX19_04303at 664.554 kb on - strand, within MPMX19_04303at 664.604 kb on + strand, within MPMX19_04303at 664.605 kb on - strand, within MPMX19_04303at 664.605 kb on - strand, within MPMX19_04303at 664.605 kb on - strand, within MPMX19_04303at 664.605 kb on - strand, within MPMX19_04303at 664.699 kb on + strand, within MPMX19_04303at 664.700 kb on - strand, within MPMX19_04303at 664.700 kb on - strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.709 kb on + strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.710 kb on - strand, within MPMX19_04303at 664.818 kb on - strand, within MPMX19_04303at 665.014 kb on - strandat 665.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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662,196 - -0.1
662,198 + -1.5
662,198 + -0.1
662,198 + +1.1
662,199 - -0.3
662,199 - -0.0
662,199 - -0.9
662,199 - -0.9
662,199 - +0.3
662,199 - -1.0
662,199 - -0.4
662,207 + -0.4
662,208 - -0.8
662,304 + -0.4
662,305 - +0.2
662,305 - +0.6
662,697 + MPMX19_04301 0.48 -0.1
662,697 + MPMX19_04301 0.48 +0.8
662,697 + MPMX19_04301 0.48 -1.2
662,697 + MPMX19_04301 0.48 -0.8
662,697 + MPMX19_04301 0.48 +0.7
662,697 + MPMX19_04301 0.48 -0.7
662,697 + MPMX19_04301 0.48 +0.8
662,698 - MPMX19_04301 0.48 +1.4
662,698 - MPMX19_04301 0.48 +0.5
662,698 - MPMX19_04301 0.48 -2.7
662,698 - MPMX19_04301 0.48 -0.0
662,698 - MPMX19_04301 0.48 -0.3
662,698 - MPMX19_04301 0.48 +0.6
662,757 + MPMX19_04301 0.54 -0.6
662,757 + MPMX19_04301 0.54 +0.9
662,757 + MPMX19_04301 0.54 -0.7
662,757 + MPMX19_04301 0.54 -0.3
662,757 + MPMX19_04301 0.54 -0.3
662,757 + MPMX19_04301 0.54 -0.2
662,757 + MPMX19_04301 0.54 -0.5
662,757 + MPMX19_04301 0.54 +0.2
662,757 + MPMX19_04301 0.54 +0.5
662,757 + MPMX19_04301 0.54 +0.6
662,757 + MPMX19_04301 0.54 -0.5
662,757 + MPMX19_04301 0.54 -0.0
662,757 + MPMX19_04301 0.54 +1.0
662,757 + MPMX19_04301 0.54 -0.5
662,758 - MPMX19_04301 0.54 -1.3
662,758 - MPMX19_04301 0.54 -0.2
662,758 - MPMX19_04301 0.54 +0.9
662,758 - MPMX19_04301 0.54 -0.8
662,758 - MPMX19_04301 0.54 -0.9
662,758 - MPMX19_04301 0.54 -1.3
662,758 - MPMX19_04301 0.54 -0.8
662,758 - MPMX19_04301 0.54 -1.4
662,859 + MPMX19_04301 0.65 -0.3
662,859 + MPMX19_04301 0.65 -1.5
662,860 - MPMX19_04301 0.65 -0.5
662,860 - MPMX19_04301 0.65 +0.8
662,943 + MPMX19_04301 0.74 -0.7
663,063 + MPMX19_04301 0.86 -0.8
663,063 + MPMX19_04301 0.86 +0.1
663,063 + MPMX19_04301 0.86 +0.8
663,063 + MPMX19_04301 0.86 -0.6
663,063 + MPMX19_04301 0.86 +0.1
663,063 + MPMX19_04301 0.86 +0.3
663,063 + MPMX19_04301 0.86 +1.0
663,063 + MPMX19_04301 0.86 -1.9
663,063 + MPMX19_04301 0.86 -0.6
663,063 + MPMX19_04301 0.86 -0.4
663,063 + MPMX19_04301 0.86 -1.0
663,063 + MPMX19_04301 0.86 +1.2
663,063 + MPMX19_04301 0.86 -0.3
663,063 + MPMX19_04301 0.86 +0.6
663,063 + MPMX19_04301 0.86 -0.4
663,063 + MPMX19_04301 0.86 +0.5
663,063 + MPMX19_04301 0.86 +1.0
663,063 + MPMX19_04301 0.86 -0.2
663,063 + MPMX19_04301 0.86 -0.4
663,064 - MPMX19_04301 0.86 +0.2
663,064 - MPMX19_04301 0.86 -0.2
663,064 - MPMX19_04301 0.86 +0.2
663,064 - MPMX19_04301 0.86 -0.2
663,064 - MPMX19_04301 0.86 -0.5
663,064 - MPMX19_04301 0.86 +0.8
663,064 - MPMX19_04301 0.86 +0.3
663,064 - MPMX19_04301 0.86 -0.8
663,064 - MPMX19_04301 0.86 -1.4
663,064 - MPMX19_04301 0.86 +0.2
663,064 - MPMX19_04301 0.86 -0.1
663,064 - MPMX19_04301 0.86 +0.8
663,064 - MPMX19_04301 0.86 -0.1
663,064 - MPMX19_04301 0.86 -0.4
663,064 - MPMX19_04301 0.86 -0.5
663,064 - MPMX19_04301 0.86 -2.0
663,064 - MPMX19_04301 0.86 -0.4
663,064 - MPMX19_04301 0.86 -0.9
663,064 - MPMX19_04301 0.86 -0.3
663,064 - MPMX19_04301 0.86 -0.7
663,064 - MPMX19_04301 0.86 -0.5
663,099 + -1.5
663,099 + +0.2
663,099 + -1.0
663,099 + +0.2
663,099 + +0.6
663,099 + +0.7
663,099 + -0.9
663,099 + -0.9
663,099 + -0.1
663,099 + -0.4
663,099 + +0.2
663,099 + -0.7
663,100 - -0.3
663,100 - +0.1
663,100 - -0.6
663,100 - +0.2
663,100 - +0.3
663,100 - -0.5
663,100 - +0.1
663,100 - -0.8
663,100 - +0.4
663,100 - +0.5
663,100 - -0.8
663,100 - -1.3
663,100 - -0.8
663,100 - -1.0
663,100 - +0.8
663,100 - -0.0
663,100 - -0.2
663,100 - -1.0
663,100 - -0.7
663,100 - -2.4
663,100 - +0.2
663,100 - -0.0
663,100 - +0.3
663,452 + MPMX19_04302 0.31 -0.9
663,452 + MPMX19_04302 0.31 -0.7
663,452 + MPMX19_04302 0.31 +0.8
663,453 - MPMX19_04302 0.31 -0.0
663,453 - MPMX19_04302 0.31 +0.2
663,453 - MPMX19_04302 0.31 -2.4
663,590 + MPMX19_04302 0.47 -0.4
663,590 + MPMX19_04302 0.47 -1.1
663,590 + MPMX19_04302 0.47 -0.2
663,590 + MPMX19_04302 0.47 -0.1
663,590 + MPMX19_04302 0.47 -0.2
663,590 + MPMX19_04302 0.47 +0.2
663,590 + MPMX19_04302 0.47 +0.4
663,590 + MPMX19_04302 0.47 +1.6
663,590 + MPMX19_04302 0.47 +0.4
663,590 + MPMX19_04302 0.47 +0.1
663,590 + MPMX19_04302 0.47 +0.5
663,590 + MPMX19_04302 0.47 +0.3
663,590 + MPMX19_04302 0.47 -1.8
663,591 - MPMX19_04302 0.47 -0.2
663,591 - MPMX19_04302 0.47 -0.6
663,591 - MPMX19_04302 0.47 -0.5
663,591 - MPMX19_04302 0.47 -0.7
663,591 - MPMX19_04302 0.47 +0.3
663,591 - MPMX19_04302 0.47 +0.7
663,591 - MPMX19_04302 0.47 -0.1
663,591 - MPMX19_04302 0.47 +0.4
663,591 - MPMX19_04302 0.47 +0.1
663,591 - MPMX19_04302 0.47 +0.4
663,725 + MPMX19_04302 0.63 +0.2
663,725 + MPMX19_04302 0.63 +0.1
663,725 + MPMX19_04302 0.63 +0.6
663,725 + MPMX19_04302 0.63 -0.5
663,725 + MPMX19_04302 0.63 -2.0
663,726 - MPMX19_04302 0.63 -1.2
663,726 - MPMX19_04302 0.63 +0.5
663,726 - MPMX19_04302 0.63 -0.2
663,726 - MPMX19_04302 0.63 -1.0
663,749 + MPMX19_04302 0.65 +0.8
663,917 + MPMX19_04302 0.85 -0.3
663,917 + MPMX19_04302 0.85 +2.1
663,917 + MPMX19_04302 0.85 +1.2
663,918 - MPMX19_04302 0.85 -0.3
663,918 - MPMX19_04302 0.85 +0.3
663,918 - MPMX19_04302 0.85 -0.5
663,918 - MPMX19_04302 0.85 +0.1
664,023 + -0.4
664,023 + +0.6
664,023 + -0.2
664,023 + -1.6
664,024 - -1.1
664,024 - -1.0
664,024 - -0.4
664,024 - +0.5
664,062 + -0.0
664,062 + -1.8
664,062 + -2.3
664,063 - +0.4
664,128 - +0.0
664,128 - -0.3
664,128 - +0.0
664,128 - -0.3
664,193 + MPMX19_04303 0.12 -1.5
664,193 + MPMX19_04303 0.12 +0.2
664,193 + MPMX19_04303 0.12 -1.3
664,193 + MPMX19_04303 0.12 -0.8
664,193 + MPMX19_04303 0.12 -1.8
664,193 + MPMX19_04303 0.12 +0.7
664,194 - MPMX19_04303 0.12 +0.1
664,194 - MPMX19_04303 0.12 +1.1
664,194 - MPMX19_04303 0.12 -0.2
664,194 - MPMX19_04303 0.12 -0.1
664,194 - MPMX19_04303 0.12 -0.2
664,553 + MPMX19_04303 0.53 -2.0
664,554 - MPMX19_04303 0.53 +0.2
664,554 - MPMX19_04303 0.53 -0.3
664,604 + MPMX19_04303 0.59 -0.0
664,605 - MPMX19_04303 0.59 -0.2
664,605 - MPMX19_04303 0.59 -0.1
664,605 - MPMX19_04303 0.59 +0.1
664,605 - MPMX19_04303 0.59 +0.6
664,699 + MPMX19_04303 0.70 -0.8
664,700 - MPMX19_04303 0.70 +0.4
664,700 - MPMX19_04303 0.70 +0.5
664,709 + MPMX19_04303 0.71 +0.2
664,709 + MPMX19_04303 0.71 -0.2
664,709 + MPMX19_04303 0.71 -1.7
664,709 + MPMX19_04303 0.71 -1.5
664,709 + MPMX19_04303 0.71 +0.5
664,709 + MPMX19_04303 0.71 +0.8
664,709 + MPMX19_04303 0.71 -0.2
664,709 + MPMX19_04303 0.71 -1.2
664,709 + MPMX19_04303 0.71 -0.4
664,709 + MPMX19_04303 0.71 +0.2
664,709 + MPMX19_04303 0.71 +0.2
664,709 + MPMX19_04303 0.71 -0.8
664,710 - MPMX19_04303 0.71 -0.0
664,710 - MPMX19_04303 0.71 +0.8
664,710 - MPMX19_04303 0.71 +0.4
664,710 - MPMX19_04303 0.71 +0.6
664,710 - MPMX19_04303 0.71 -1.4
664,710 - MPMX19_04303 0.71 -0.5
664,710 - MPMX19_04303 0.71 -1.4
664,710 - MPMX19_04303 0.71 +0.7
664,710 - MPMX19_04303 0.71 -0.4
664,710 - MPMX19_04303 0.71 +0.2
664,710 - MPMX19_04303 0.71 +0.9
664,710 - MPMX19_04303 0.71 -0.3
664,710 - MPMX19_04303 0.71 +0.1
664,710 - MPMX19_04303 0.71 -0.2
664,710 - MPMX19_04303 0.71 -0.7
664,818 - MPMX19_04303 0.83 -0.8
665,014 - -0.0
665,014 - -0.4

Or see this region's nucleotide sequence