Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04199 and MPMX19_04200 overlap by 8 nucleotides MPMX19_04200 and MPMX19_04201 are separated by 32 nucleotides MPMX19_04201 and MPMX19_04202 are separated by 126 nucleotides MPMX19_04202 and MPMX19_04203 overlap by 4 nucleotides
MPMX19_04199: MPMX19_04199 - Pseudaminic acid synthase, at 533,962 to 535,017
_04199
MPMX19_04200: MPMX19_04200 - 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase, at 535,010 to 535,774
_04200
MPMX19_04201: MPMX19_04201 - hypothetical protein, at 535,807 to 536,040
_04201
MPMX19_04202: MPMX19_04202 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 536,167 to 536,928
_04202
MPMX19_04203: MPMX19_04203 - hypothetical protein, at 536,925 to 537,173
_04203
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 534.811 kb on + strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 535.015 kb on + strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.266 kb on + strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.425 kb on - strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.524 kb on - strand, within MPMX19_04200 at 535.530 kb on - strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200 at 536.137 kb on + strand at 536.137 kb on + strand at 536.137 kb on + strand at 536.137 kb on + strand at 536.137 kb on + strand at 536.137 kb on + strand at 536.138 kb on - strand at 536.138 kb on - strand at 536.139 kb on + strand at 536.139 kb on + strand at 536.139 kb on + strand at 536.139 kb on + strand at 536.139 kb on + strand at 536.140 kb on - strand at 536.140 kb on - strand at 536.140 kb on - strand at 536.140 kb on - strand at 536.140 kb on - strand at 536.140 kb on - strand at 536.392 kb on + strand, within MPMX19_04202 at 536.392 kb on + strand, within MPMX19_04202 at 536.392 kb on + strand, within MPMX19_04202 at 536.392 kb on + strand, within MPMX19_04202 at 536.393 kb on - strand, within MPMX19_04202 at 536.393 kb on - strand, within MPMX19_04202 at 536.393 kb on - strand, within MPMX19_04202 at 536.393 kb on - strand, within MPMX19_04202 at 536.393 kb on - strand, within MPMX19_04202 at 536.504 kb on + strand, within MPMX19_04202 at 536.504 kb on + strand, within MPMX19_04202 at 536.505 kb on - strand, within MPMX19_04202 at 536.505 kb on - strand, within MPMX19_04202 at 536.823 kb on + strand, within MPMX19_04202 at 536.823 kb on + strand, within MPMX19_04202 at 536.823 kb on + strand, within MPMX19_04202 at 536.823 kb on + strand, within MPMX19_04202 at 536.823 kb on + strand, within MPMX19_04202 at 536.823 kb on + strand, within MPMX19_04202 at 536.823 kb on + strand, within MPMX19_04202
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 534,811 + MPMX19_04199 0.80 +0.1 534,812 - MPMX19_04199 0.80 -0.6 534,812 - MPMX19_04199 0.80 +0.3 534,812 - MPMX19_04199 0.80 -1.6 534,826 + MPMX19_04199 0.82 +0.3 534,826 + MPMX19_04199 0.82 -0.7 534,826 + MPMX19_04199 0.82 -1.4 534,826 + MPMX19_04199 0.82 -1.2 534,826 + MPMX19_04199 0.82 -2.0 534,826 + MPMX19_04199 0.82 -1.9 534,826 + MPMX19_04199 0.82 -0.1 534,826 + MPMX19_04199 0.82 -1.0 534,826 + MPMX19_04199 0.82 -0.6 534,826 + MPMX19_04199 0.82 -1.7 534,826 + MPMX19_04199 0.82 +0.2 534,826 + MPMX19_04199 0.82 -0.7 534,826 + MPMX19_04199 0.82 -3.0 534,827 - MPMX19_04199 0.82 -0.6 534,827 - MPMX19_04199 0.82 -0.5 534,827 - MPMX19_04199 0.82 -1.2 534,827 - MPMX19_04199 0.82 -0.4 534,827 - MPMX19_04199 0.82 -0.7 534,827 - MPMX19_04199 0.82 -0.9 534,827 - MPMX19_04199 0.82 -2.2 534,827 - MPMX19_04199 0.82 -0.8 534,827 - MPMX19_04199 0.82 -1.6 534,827 - MPMX19_04199 0.82 -1.0 534,827 - MPMX19_04199 0.82 -2.0 534,827 - MPMX19_04199 0.82 -0.4 534,827 - MPMX19_04199 0.82 -0.0 535,015 + -0.0 535,016 - +0.8 535,016 - -1.2 535,016 - -2.4 535,016 - -0.0 535,016 - -0.8 535,266 + MPMX19_04200 0.33 -0.0 535,267 - MPMX19_04200 0.34 -1.0 535,267 - MPMX19_04200 0.34 -0.0 535,267 - MPMX19_04200 0.34 -0.4 535,267 - MPMX19_04200 0.34 -0.8 535,267 - MPMX19_04200 0.34 +0.4 535,267 - MPMX19_04200 0.34 -1.7 535,267 - MPMX19_04200 0.34 +0.5 535,400 + MPMX19_04200 0.51 -1.2 535,400 + MPMX19_04200 0.51 -0.7 535,400 + MPMX19_04200 0.51 -0.4 535,400 + MPMX19_04200 0.51 -0.8 535,400 + MPMX19_04200 0.51 +0.0 535,400 + MPMX19_04200 0.51 -1.4 535,400 + MPMX19_04200 0.51 -1.4 535,400 + MPMX19_04200 0.51 -1.4 535,400 + MPMX19_04200 0.51 -1.1 535,400 + MPMX19_04200 0.51 -1.8 535,400 + MPMX19_04200 0.51 -1.8 535,400 + MPMX19_04200 0.51 -1.5 535,400 + MPMX19_04200 0.51 -2.5 535,400 + MPMX19_04200 0.51 -1.4 535,401 - MPMX19_04200 0.51 +0.3 535,401 - MPMX19_04200 0.51 -1.2 535,401 - MPMX19_04200 0.51 -2.4 535,401 - MPMX19_04200 0.51 -1.8 535,401 - MPMX19_04200 0.51 -1.2 535,401 - MPMX19_04200 0.51 -1.9 535,425 - MPMX19_04200 0.54 +0.0 535,523 + MPMX19_04200 0.67 -1.5 535,523 + MPMX19_04200 0.67 -0.9 535,523 + MPMX19_04200 0.67 -0.0 535,523 + MPMX19_04200 0.67 -2.2 535,523 + MPMX19_04200 0.67 -2.1 535,524 - MPMX19_04200 0.67 -1.0 535,530 - MPMX19_04200 0.68 -1.4 535,634 + MPMX19_04200 0.82 -1.0 535,634 + MPMX19_04200 0.82 +0.2 535,634 + MPMX19_04200 0.82 -1.4 535,634 + MPMX19_04200 0.82 -2.1 535,634 + MPMX19_04200 0.82 -1.2 535,634 + MPMX19_04200 0.82 -0.2 535,635 - MPMX19_04200 0.82 -1.1 535,635 - MPMX19_04200 0.82 -1.0 535,635 - MPMX19_04200 0.82 -0.8 536,137 + -0.2 536,137 + -0.7 536,137 + -0.1 536,137 + -1.2 536,137 + -0.2 536,137 + +0.2 536,138 - +0.6 536,138 - -1.9 536,139 + +0.5 536,139 + +1.2 536,139 + -0.9 536,139 + -1.5 536,139 + +1.0 536,140 - +0.8 536,140 - -0.8 536,140 - -0.5 536,140 - -0.9 536,140 - -1.4 536,140 - -0.7 536,392 + MPMX19_04202 0.30 -1.9 536,392 + MPMX19_04202 0.30 -0.4 536,392 + MPMX19_04202 0.30 -0.2 536,392 + MPMX19_04202 0.30 +0.6 536,393 - MPMX19_04202 0.30 -0.6 536,393 - MPMX19_04202 0.30 -0.6 536,393 - MPMX19_04202 0.30 -0.8 536,393 - MPMX19_04202 0.30 -2.4 536,393 - MPMX19_04202 0.30 -1.1 536,504 + MPMX19_04202 0.44 -1.8 536,504 + MPMX19_04202 0.44 -0.0 536,505 - MPMX19_04202 0.44 -1.4 536,505 - MPMX19_04202 0.44 -0.2 536,823 + MPMX19_04202 0.86 +0.2 536,823 + MPMX19_04202 0.86 +0.2 536,823 + MPMX19_04202 0.86 +0.2 536,823 + MPMX19_04202 0.86 -0.8 536,823 + MPMX19_04202 0.86 -0.7 536,823 + MPMX19_04202 0.86 -0.8 536,823 + MPMX19_04202 0.86 +0.8
Or see this region's nucleotide sequence