Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04192

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04191 and MPMX19_04192 are separated by 8 nucleotidesMPMX19_04192 and MPMX19_04193 are separated by 281 nucleotidesMPMX19_04193 and MPMX19_04194 are separated by 19 nucleotides MPMX19_04191: MPMX19_04191 - hypothetical protein, at 523,553 to 525,835 _04191 MPMX19_04192: MPMX19_04192 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 525,844 to 526,605 _04192 MPMX19_04193: MPMX19_04193 - hypothetical protein, at 526,887 to 527,288 _04193 MPMX19_04194: MPMX19_04194 - hypothetical protein, at 527,308 to 527,652 _04194 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1 2at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.903 kb on + strand, within MPMX19_04191at 524.904 kb on - strand, within MPMX19_04191at 524.904 kb on - strand, within MPMX19_04191at 524.904 kb on - strand, within MPMX19_04191at 524.904 kb on - strand, within MPMX19_04191at 524.904 kb on - strand, within MPMX19_04191at 524.904 kb on - strand, within MPMX19_04191at 525.461 kb on + strand, within MPMX19_04191at 525.462 kb on - strand, within MPMX19_04191at 525.476 kb on + strand, within MPMX19_04191at 525.495 kb on - strand, within MPMX19_04191at 525.644 kb on + strandat 525.644 kb on + strandat 525.644 kb on + strandat 525.644 kb on + strandat 525.644 kb on + strandat 525.644 kb on + strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.645 kb on - strandat 525.833 kb on + strandat 525.833 kb on + strandat 525.833 kb on + strandat 525.834 kb on - strandat 525.834 kb on - strandat 525.834 kb on - strandat 525.834 kb on - strandat 525.929 kb on + strand, within MPMX19_04192at 525.929 kb on + strand, within MPMX19_04192at 525.929 kb on + strand, within MPMX19_04192at 525.929 kb on + strand, within MPMX19_04192at 525.930 kb on - strand, within MPMX19_04192at 525.930 kb on - strand, within MPMX19_04192at 525.965 kb on + strand, within MPMX19_04192at 525.965 kb on + strand, within MPMX19_04192at 525.965 kb on + strand, within MPMX19_04192at 525.965 kb on + strand, within MPMX19_04192at 525.965 kb on + strand, within MPMX19_04192at 525.966 kb on - strand, within MPMX19_04192at 525.966 kb on - strand, within MPMX19_04192at 525.966 kb on - strand, within MPMX19_04192at 526.193 kb on + strand, within MPMX19_04192at 526.193 kb on + strand, within MPMX19_04192at 526.193 kb on + strand, within MPMX19_04192at 526.194 kb on - strand, within MPMX19_04192at 526.194 kb on - strand, within MPMX19_04192at 526.194 kb on - strand, within MPMX19_04192at 526.337 kb on + strand, within MPMX19_04192at 526.337 kb on + strand, within MPMX19_04192at 526.337 kb on + strand, within MPMX19_04192at 526.337 kb on + strand, within MPMX19_04192at 526.337 kb on + strand, within MPMX19_04192at 526.338 kb on - strand, within MPMX19_04192at 526.338 kb on - strand, within MPMX19_04192at 526.338 kb on - strand, within MPMX19_04192at 526.669 kb on - strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.779 kb on + strandat 526.780 kb on - strandat 526.780 kb on - strandat 526.780 kb on - strandat 526.780 kb on - strandat 526.780 kb on - strandat 526.780 kb on - strandat 526.780 kb on - strandat 526.780 kb on - strandat 526.806 kb on + strandat 526.806 kb on + strandat 526.806 kb on + strandat 526.806 kb on + strandat 526.806 kb on + strandat 526.806 kb on + strandat 526.807 kb on - strandat 526.807 kb on - strandat 526.807 kb on - strandat 526.807 kb on - strandat 526.807 kb on - strandat 526.807 kb on - strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.817 kb on + strandat 526.818 kb on - strandat 526.818 kb on - strandat 526.818 kb on - strandat 526.828 kb on + strandat 526.994 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.088 kb on + strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.089 kb on - strand, within MPMX19_04193at 527.371 kb on + strand, within MPMX19_04194

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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524,903 + MPMX19_04191 0.59 -0.5
524,903 + MPMX19_04191 0.59 -0.4
524,903 + MPMX19_04191 0.59 -0.1
524,903 + MPMX19_04191 0.59 +0.2
524,903 + MPMX19_04191 0.59 -1.1
524,903 + MPMX19_04191 0.59 +1.3
524,903 + MPMX19_04191 0.59 +0.3
524,903 + MPMX19_04191 0.59 +0.4
524,903 + MPMX19_04191 0.59 +0.5
524,903 + MPMX19_04191 0.59 -0.6
524,903 + MPMX19_04191 0.59 +0.7
524,903 + MPMX19_04191 0.59 +0.5
524,904 - MPMX19_04191 0.59 -1.6
524,904 - MPMX19_04191 0.59 +0.4
524,904 - MPMX19_04191 0.59 +0.9
524,904 - MPMX19_04191 0.59 +0.1
524,904 - MPMX19_04191 0.59 +1.2
524,904 - MPMX19_04191 0.59 -1.1
525,461 + MPMX19_04191 0.84 +0.2
525,462 - MPMX19_04191 0.84 -0.3
525,476 + MPMX19_04191 0.84 +1.2
525,495 - MPMX19_04191 0.85 -1.2
525,644 + +0.8
525,644 + +0.1
525,644 + +0.1
525,644 + +0.2
525,644 + -1.1
525,644 + -1.9
525,645 - -0.7
525,645 - -0.7
525,645 - +0.5
525,645 - +0.3
525,645 - -1.6
525,645 - -1.2
525,645 - -0.8
525,645 - +1.0
525,645 - +0.3
525,645 - -0.4
525,645 - -0.6
525,645 - -0.1
525,645 - -0.9
525,833 + -0.9
525,833 + -0.2
525,833 + +0.2
525,834 - -1.6
525,834 - -0.1
525,834 - -1.5
525,834 - -0.6
525,929 + MPMX19_04192 0.11 +0.1
525,929 + MPMX19_04192 0.11 +1.9
525,929 + MPMX19_04192 0.11 +0.2
525,929 + MPMX19_04192 0.11 +0.5
525,930 - MPMX19_04192 0.11 +0.4
525,930 - MPMX19_04192 0.11 +0.5
525,965 + MPMX19_04192 0.16 -0.7
525,965 + MPMX19_04192 0.16 -1.1
525,965 + MPMX19_04192 0.16 -0.1
525,965 + MPMX19_04192 0.16 +1.0
525,965 + MPMX19_04192 0.16 +1.0
525,966 - MPMX19_04192 0.16 +0.5
525,966 - MPMX19_04192 0.16 -0.8
525,966 - MPMX19_04192 0.16 -0.7
526,193 + MPMX19_04192 0.46 -0.6
526,193 + MPMX19_04192 0.46 -1.0
526,193 + MPMX19_04192 0.46 +0.2
526,194 - MPMX19_04192 0.46 +0.3
526,194 - MPMX19_04192 0.46 -0.2
526,194 - MPMX19_04192 0.46 +0.9
526,337 + MPMX19_04192 0.65 -0.5
526,337 + MPMX19_04192 0.65 +0.8
526,337 + MPMX19_04192 0.65 -1.3
526,337 + MPMX19_04192 0.65 -1.1
526,337 + MPMX19_04192 0.65 +0.4
526,338 - MPMX19_04192 0.65 -0.8
526,338 - MPMX19_04192 0.65 -0.9
526,338 - MPMX19_04192 0.65 +0.2
526,669 - -0.8
526,779 + -1.0
526,779 + -0.6
526,779 + -0.7
526,779 + -0.6
526,779 + -0.4
526,779 + -1.2
526,779 + -1.0
526,779 + -0.8
526,779 + -1.6
526,779 + -0.5
526,779 + +0.9
526,779 + -1.1
526,780 - -0.4
526,780 - +1.8
526,780 - +0.1
526,780 - +0.3
526,780 - -0.6
526,780 - -0.7
526,780 - -0.9
526,780 - -1.0
526,806 + -0.4
526,806 + -0.8
526,806 + +0.4
526,806 + -0.6
526,806 + -0.9
526,806 + +0.8
526,807 - -1.4
526,807 - +0.7
526,807 - +0.8
526,807 - +0.2
526,807 - -1.7
526,807 - -1.7
526,817 + +0.1
526,817 + -1.2
526,817 + -1.2
526,817 + -0.2
526,817 + -1.1
526,817 + -1.5
526,817 + -1.0
526,817 + -1.5
526,817 + -1.7
526,818 - +0.1
526,818 - -0.3
526,818 - -0.1
526,828 + -0.8
526,994 + MPMX19_04193 0.27 -1.1
527,088 + MPMX19_04193 0.50 -1.6
527,088 + MPMX19_04193 0.50 -0.7
527,088 + MPMX19_04193 0.50 -0.8
527,088 + MPMX19_04193 0.50 -0.2
527,088 + MPMX19_04193 0.50 +1.0
527,088 + MPMX19_04193 0.50 +1.3
527,088 + MPMX19_04193 0.50 -2.5
527,088 + MPMX19_04193 0.50 -1.0
527,088 + MPMX19_04193 0.50 +0.5
527,088 + MPMX19_04193 0.50 -2.1
527,088 + MPMX19_04193 0.50 -0.7
527,088 + MPMX19_04193 0.50 -0.7
527,088 + MPMX19_04193 0.50 -1.2
527,088 + MPMX19_04193 0.50 -0.0
527,088 + MPMX19_04193 0.50 -1.1
527,088 + MPMX19_04193 0.50 +0.3
527,088 + MPMX19_04193 0.50 -2.2
527,088 + MPMX19_04193 0.50 -1.2
527,088 + MPMX19_04193 0.50 -0.9
527,089 - MPMX19_04193 0.50 -1.1
527,089 - MPMX19_04193 0.50 -1.8
527,089 - MPMX19_04193 0.50 +0.2
527,089 - MPMX19_04193 0.50 -0.5
527,089 - MPMX19_04193 0.50 +1.6
527,089 - MPMX19_04193 0.50 -0.3
527,089 - MPMX19_04193 0.50 -1.0
527,089 - MPMX19_04193 0.50 +0.3
527,089 - MPMX19_04193 0.50 -0.8
527,089 - MPMX19_04193 0.50 +0.4
527,089 - MPMX19_04193 0.50 -0.2
527,089 - MPMX19_04193 0.50 -1.0
527,089 - MPMX19_04193 0.50 -0.3
527,371 + MPMX19_04194 0.18 -0.6

Or see this region's nucleotide sequence