Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04065

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04064 and MPMX19_04065 are separated by 8 nucleotidesMPMX19_04065 and MPMX19_04066 are separated by 109 nucleotidesMPMX19_04066 and MPMX19_04067 are separated by 40 nucleotides MPMX19_04064: MPMX19_04064 - hypothetical protein, at 368,714 to 370,516 _04064 MPMX19_04065: MPMX19_04065 - Fe(3+)-binding periplasmic protein, at 370,525 to 371,511 _04065 MPMX19_04066: MPMX19_04066 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 371,621 to 372,439 _04066 MPMX19_04067: MPMX19_04067 - Spermidine/putrescine import ATP-binding protein PotA, at 372,480 to 373,544 _04067 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1at 369.705 kb on + strand, within MPMX19_04064at 369.705 kb on + strand, within MPMX19_04064at 369.705 kb on + strand, within MPMX19_04064at 369.705 kb on + strand, within MPMX19_04064at 369.706 kb on - strand, within MPMX19_04064at 369.728 kb on + strand, within MPMX19_04064at 369.729 kb on - strand, within MPMX19_04064at 369.729 kb on - strand, within MPMX19_04064at 369.729 kb on - strand, within MPMX19_04064at 370.259 kb on + strand, within MPMX19_04064at 370.260 kb on - strand, within MPMX19_04064at 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.595 kb on + strandat 370.595 kb on + strandat 370.595 kb on + strandat 370.850 kb on + strand, within MPMX19_04065at 370.850 kb on + strand, within MPMX19_04065at 370.850 kb on + strand, within MPMX19_04065at 370.850 kb on + strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.868 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 371.018 kb on + strand, within MPMX19_04065at 371.019 kb on - strand, within MPMX19_04065at 371.019 kb on - strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.147 kb on + strand, within MPMX19_04065at 371.147 kb on + strand, within MPMX19_04065at 371.148 kb on - strand, within MPMX19_04065at 371.201 kb on + strand, within MPMX19_04065at 371.201 kb on + strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.546 kb on + strandat 371.546 kb on + strandat 371.546 kb on + strandat 371.602 kb on + strandat 371.602 kb on + strandat 371.602 kb on + strandat 371.602 kb on + strandat 371.602 kb on + strandat 371.603 kb on - strandat 371.603 kb on - strandat 371.603 kb on - strandat 371.603 kb on - strandat 371.615 kb on + strandat 371.615 kb on + strandat 371.616 kb on - strandat 371.622 kb on + strandat 371.622 kb on + strandat 371.622 kb on + strandat 371.623 kb on - strandat 371.623 kb on - strandat 371.623 kb on - strandat 371.667 kb on + strandat 371.667 kb on + strandat 371.667 kb on + strandat 371.667 kb on + strandat 371.668 kb on - strandat 371.668 kb on - strandat 371.668 kb on - strandat 371.944 kb on + strand, within MPMX19_04066at 371.944 kb on + strand, within MPMX19_04066at 371.944 kb on + strand, within MPMX19_04066at 371.944 kb on + strand, within MPMX19_04066at 371.944 kb on + strand, within MPMX19_04066at 371.945 kb on - strand, within MPMX19_04066at 371.945 kb on - strand, within MPMX19_04066at 371.945 kb on - strand, within MPMX19_04066at 371.945 kb on - strand, within MPMX19_04066at 371.945 kb on - strand, within MPMX19_04066at 371.945 kb on - strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.987 kb on + strand, within MPMX19_04066at 371.988 kb on - strand, within MPMX19_04066at 371.988 kb on - strand, within MPMX19_04066at 371.988 kb on - strand, within MPMX19_04066at 372.123 kb on + strand, within MPMX19_04066at 372.123 kb on + strand, within MPMX19_04066at 372.123 kb on + strand, within MPMX19_04066at 372.124 kb on - strand, within MPMX19_04066at 372.124 kb on - strand, within MPMX19_04066at 372.124 kb on - strand, within MPMX19_04066at 372.124 kb on - strand, within MPMX19_04066at 372.124 kb on - strand, within MPMX19_04066at 372.124 kb on - strand, within MPMX19_04066at 372.124 kb on - strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.261 kb on + strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066at 372.262 kb on - strand, within MPMX19_04066

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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369,705 + MPMX19_04064 0.55 -0.1
369,705 + MPMX19_04064 0.55 -0.6
369,705 + MPMX19_04064 0.55 +0.3
369,705 + MPMX19_04064 0.55 -0.6
369,706 - MPMX19_04064 0.55 +0.4
369,728 + MPMX19_04064 0.56 +0.4
369,729 - MPMX19_04064 0.56 +1.1
369,729 - MPMX19_04064 0.56 +0.2
369,729 - MPMX19_04064 0.56 +1.5
370,259 + MPMX19_04064 0.86 +0.3
370,260 - MPMX19_04064 0.86 -1.2
370,507 + -1.5
370,507 + -0.6
370,507 + -0.6
370,507 + +0.7
370,507 + +0.3
370,507 + -0.4
370,507 + +0.8
370,595 + +1.2
370,595 + +0.2
370,595 + +0.3
370,850 + MPMX19_04065 0.33 +1.3
370,850 + MPMX19_04065 0.33 -0.0
370,850 + MPMX19_04065 0.33 +0.2
370,850 + MPMX19_04065 0.33 +0.2
370,851 - MPMX19_04065 0.33 -2.3
370,851 - MPMX19_04065 0.33 +0.3
370,851 - MPMX19_04065 0.33 -0.4
370,851 - MPMX19_04065 0.33 +0.2
370,851 - MPMX19_04065 0.33 +1.4
370,868 + MPMX19_04065 0.35 -0.4
370,952 + MPMX19_04065 0.43 +1.2
370,952 + MPMX19_04065 0.43 -0.2
370,952 + MPMX19_04065 0.43 -0.8
370,952 + MPMX19_04065 0.43 +0.7
370,952 + MPMX19_04065 0.43 -0.7
370,952 + MPMX19_04065 0.43 -1.4
370,953 - MPMX19_04065 0.43 +0.7
370,953 - MPMX19_04065 0.43 -0.5
370,953 - MPMX19_04065 0.43 +0.4
370,953 - MPMX19_04065 0.43 +0.1
370,953 - MPMX19_04065 0.43 +0.9
370,953 - MPMX19_04065 0.43 -0.2
370,953 - MPMX19_04065 0.43 +0.2
370,953 - MPMX19_04065 0.43 -0.1
370,955 + MPMX19_04065 0.44 -0.8
370,955 + MPMX19_04065 0.44 -0.1
370,955 + MPMX19_04065 0.44 +0.9
370,955 + MPMX19_04065 0.44 -1.1
370,955 + MPMX19_04065 0.44 -1.4
370,956 - MPMX19_04065 0.44 -0.4
370,956 - MPMX19_04065 0.44 +0.1
370,956 - MPMX19_04065 0.44 +1.7
370,956 - MPMX19_04065 0.44 -0.4
370,956 - MPMX19_04065 0.44 -0.5
370,956 - MPMX19_04065 0.44 -0.8
370,956 - MPMX19_04065 0.44 -0.4
370,956 - MPMX19_04065 0.44 -0.1
371,018 + MPMX19_04065 0.50 +0.5
371,019 - MPMX19_04065 0.50 +0.3
371,019 - MPMX19_04065 0.50 -1.3
371,108 + MPMX19_04065 0.59 +0.1
371,108 + MPMX19_04065 0.59 -0.9
371,108 + MPMX19_04065 0.59 +0.1
371,108 + MPMX19_04065 0.59 -1.0
371,108 + MPMX19_04065 0.59 -0.5
371,108 + MPMX19_04065 0.59 +0.6
371,108 + MPMX19_04065 0.59 +0.4
371,108 + MPMX19_04065 0.59 -0.4
371,108 + MPMX19_04065 0.59 +0.2
371,108 + MPMX19_04065 0.59 +0.4
371,109 - MPMX19_04065 0.59 -0.8
371,109 - MPMX19_04065 0.59 +0.7
371,109 - MPMX19_04065 0.59 -0.7
371,109 - MPMX19_04065 0.59 -0.3
371,109 - MPMX19_04065 0.59 -0.8
371,109 - MPMX19_04065 0.59 +0.7
371,109 - MPMX19_04065 0.59 +0.3
371,109 - MPMX19_04065 0.59 +1.2
371,109 - MPMX19_04065 0.59 -0.8
371,109 - MPMX19_04065 0.59 +0.3
371,147 + MPMX19_04065 0.63 -0.7
371,147 + MPMX19_04065 0.63 +0.0
371,148 - MPMX19_04065 0.63 -1.6
371,201 + MPMX19_04065 0.68 -0.1
371,201 + MPMX19_04065 0.68 +1.1
371,202 - MPMX19_04065 0.69 -0.6
371,202 - MPMX19_04065 0.69 -0.5
371,202 - MPMX19_04065 0.69 -0.1
371,202 - MPMX19_04065 0.69 -0.8
371,202 - MPMX19_04065 0.69 +0.6
371,202 - MPMX19_04065 0.69 +0.1
371,417 + -0.6
371,417 + +1.1
371,417 + +0.5
371,417 + -2.0
371,417 + +1.3
371,417 + -1.0
371,417 + +0.7
371,417 + +0.4
371,418 - +0.2
371,418 - -0.5
371,418 - +0.5
371,418 - -1.3
371,418 - +1.3
371,418 - -0.8
371,418 - +0.4
371,418 - -0.2
371,546 + +0.7
371,546 + -0.3
371,546 + +0.0
371,602 + +1.7
371,602 + -1.2
371,602 + -1.0
371,602 + +0.0
371,602 + +0.9
371,603 - -0.7
371,603 - +0.2
371,603 - -1.6
371,603 - +0.7
371,615 + -0.4
371,615 + +0.2
371,616 - +0.2
371,622 + +0.1
371,622 + -0.3
371,622 + -0.7
371,623 - +0.6
371,623 - -0.1
371,623 - -1.7
371,667 + -0.2
371,667 + -2.1
371,667 + -0.5
371,667 + -1.0
371,668 - +1.2
371,668 - +0.4
371,668 - -0.4
371,944 + MPMX19_04066 0.39 -0.3
371,944 + MPMX19_04066 0.39 +0.2
371,944 + MPMX19_04066 0.39 +0.0
371,944 + MPMX19_04066 0.39 +0.4
371,944 + MPMX19_04066 0.39 -0.3
371,945 - MPMX19_04066 0.40 +0.2
371,945 - MPMX19_04066 0.40 -1.1
371,945 - MPMX19_04066 0.40 +1.3
371,945 - MPMX19_04066 0.40 +0.1
371,945 - MPMX19_04066 0.40 -1.2
371,945 - MPMX19_04066 0.40 -0.5
371,987 + MPMX19_04066 0.45 +0.9
371,987 + MPMX19_04066 0.45 -0.4
371,987 + MPMX19_04066 0.45 -0.4
371,987 + MPMX19_04066 0.45 -0.7
371,987 + MPMX19_04066 0.45 +0.9
371,987 + MPMX19_04066 0.45 +0.0
371,987 + MPMX19_04066 0.45 -0.5
371,987 + MPMX19_04066 0.45 -1.1
371,988 - MPMX19_04066 0.45 -0.1
371,988 - MPMX19_04066 0.45 -0.8
371,988 - MPMX19_04066 0.45 -0.3
372,123 + MPMX19_04066 0.61 +0.7
372,123 + MPMX19_04066 0.61 +0.2
372,123 + MPMX19_04066 0.61 -1.1
372,124 - MPMX19_04066 0.61 -0.5
372,124 - MPMX19_04066 0.61 -0.4
372,124 - MPMX19_04066 0.61 +0.7
372,124 - MPMX19_04066 0.61 +0.8
372,124 - MPMX19_04066 0.61 -1.6
372,124 - MPMX19_04066 0.61 +0.7
372,124 - MPMX19_04066 0.61 -0.4
372,261 + MPMX19_04066 0.78 -0.6
372,261 + MPMX19_04066 0.78 +0.2
372,261 + MPMX19_04066 0.78 +1.0
372,261 + MPMX19_04066 0.78 -1.3
372,261 + MPMX19_04066 0.78 -0.4
372,261 + MPMX19_04066 0.78 +0.7
372,261 + MPMX19_04066 0.78 +0.0
372,261 + MPMX19_04066 0.78 -2.9
372,261 + MPMX19_04066 0.78 +0.2
372,261 + MPMX19_04066 0.78 +0.3
372,261 + MPMX19_04066 0.78 +0.3
372,261 + MPMX19_04066 0.78 -0.3
372,261 + MPMX19_04066 0.78 -1.4
372,261 + MPMX19_04066 0.78 -1.0
372,261 + MPMX19_04066 0.78 +0.2
372,262 - MPMX19_04066 0.78 -1.0
372,262 - MPMX19_04066 0.78 +1.7
372,262 - MPMX19_04066 0.78 +0.9
372,262 - MPMX19_04066 0.78 +0.6
372,262 - MPMX19_04066 0.78 +0.2
372,262 - MPMX19_04066 0.78 -0.6
372,262 - MPMX19_04066 0.78 -0.6
372,262 - MPMX19_04066 0.78 -0.9
372,262 - MPMX19_04066 0.78 -0.4

Or see this region's nucleotide sequence