Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03859

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03858 and MPMX19_03859 are separated by 73 nucleotidesMPMX19_03859 and MPMX19_03860 are separated by 47 nucleotides MPMX19_03858: MPMX19_03858 - Multidrug resistance protein MdtK, at 104,474 to 105,898 _03858 MPMX19_03859: MPMX19_03859 - hypothetical protein, at 105,972 to 106,550 _03859 MPMX19_03860: MPMX19_03860 - hypothetical protein, at 106,598 to 107,230 _03860 Position (kb) 105 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.137 kb on + strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.138 kb on - strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.140 kb on + strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.141 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.171 kb on - strand, within MPMX19_03858at 105.258 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.371 kb on + strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.372 kb on - strand, within MPMX19_03858at 105.596 kb on + strand, within MPMX19_03858at 105.596 kb on + strand, within MPMX19_03858at 105.597 kb on - strand, within MPMX19_03858at 105.597 kb on - strand, within MPMX19_03858at 105.597 kb on - strand, within MPMX19_03858at 105.597 kb on - strand, within MPMX19_03858at 105.597 kb on - strand, within MPMX19_03858at 105.620 kb on + strand, within MPMX19_03858at 105.621 kb on - strand, within MPMX19_03858at 105.621 kb on - strand, within MPMX19_03858at 105.621 kb on - strand, within MPMX19_03858at 105.621 kb on - strand, within MPMX19_03858at 105.650 kb on + strand, within MPMX19_03858at 105.650 kb on + strand, within MPMX19_03858at 105.651 kb on - strand, within MPMX19_03858at 105.651 kb on - strand, within MPMX19_03858at 105.651 kb on - strand, within MPMX19_03858at 105.651 kb on - strand, within MPMX19_03858at 105.651 kb on - strand, within MPMX19_03858at 105.651 kb on - strand, within MPMX19_03858at 105.784 kb on + strandat 105.784 kb on + strandat 105.785 kb on - strandat 105.807 kb on - strandat 105.874 kb on - strandat 105.896 kb on + strandat 105.896 kb on + strandat 105.896 kb on + strandat 105.897 kb on - strandat 105.897 kb on - strandat 105.929 kb on + strandat 105.929 kb on + strandat 105.929 kb on + strandat 105.929 kb on + strandat 105.929 kb on + strandat 105.929 kb on + strandat 105.930 kb on - strandat 105.930 kb on - strandat 105.930 kb on - strandat 105.937 kb on - strandat 105.968 kb on + strandat 105.968 kb on + strandat 105.968 kb on + strandat 105.968 kb on + strandat 105.968 kb on + strandat 105.968 kb on + strandat 105.968 kb on + strandat 105.968 kb on + strandat 105.968 kb on + strandat 106.113 kb on + strand, within MPMX19_03859at 106.114 kb on - strand, within MPMX19_03859at 106.114 kb on - strand, within MPMX19_03859at 106.114 kb on - strand, within MPMX19_03859at 106.114 kb on - strand, within MPMX19_03859at 106.115 kb on + strand, within MPMX19_03859at 106.115 kb on + strand, within MPMX19_03859at 106.179 kb on + strand, within MPMX19_03859at 106.179 kb on + strand, within MPMX19_03859at 106.180 kb on - strand, within MPMX19_03859at 106.245 kb on + strand, within MPMX19_03859at 106.246 kb on - strand, within MPMX19_03859at 106.246 kb on - strand, within MPMX19_03859at 106.535 kb on + strandat 106.670 kb on + strand, within MPMX19_03860at 106.670 kb on + strand, within MPMX19_03860at 106.671 kb on - strand, within MPMX19_03860at 106.671 kb on - strand, within MPMX19_03860at 106.671 kb on - strand, within MPMX19_03860at 106.671 kb on - strand, within MPMX19_03860at 106.693 kb on + strand, within MPMX19_03860at 106.693 kb on + strand, within MPMX19_03860at 106.693 kb on + strand, within MPMX19_03860at 106.693 kb on + strand, within MPMX19_03860at 106.730 kb on + strand, within MPMX19_03860at 106.736 kb on + strand, within MPMX19_03860at 106.736 kb on + strand, within MPMX19_03860at 106.736 kb on + strand, within MPMX19_03860at 106.737 kb on - strand, within MPMX19_03860at 106.737 kb on - strand, within MPMX19_03860at 106.737 kb on - strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.769 kb on + strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.770 kb on - strand, within MPMX19_03860at 106.845 kb on + strand, within MPMX19_03860at 106.845 kb on + strand, within MPMX19_03860at 106.845 kb on + strand, within MPMX19_03860at 106.845 kb on + strand, within MPMX19_03860at 106.868 kb on + strand, within MPMX19_03860at 106.869 kb on - strand, within MPMX19_03860at 106.881 kb on + strand, within MPMX19_03860at 106.881 kb on + strand, within MPMX19_03860at 106.881 kb on + strand, within MPMX19_03860at 106.881 kb on + strand, within MPMX19_03860at 106.881 kb on + strand, within MPMX19_03860at 106.881 kb on + strand, within MPMX19_03860at 106.881 kb on + strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.882 kb on - strand, within MPMX19_03860at 106.883 kb on - strand, within MPMX19_03860at 106.962 kb on - strand, within MPMX19_03860at 107.004 kb on + strand, within MPMX19_03860at 107.004 kb on + strand, within MPMX19_03860at 107.004 kb on + strand, within MPMX19_03860at 107.004 kb on + strand, within MPMX19_03860at 107.004 kb on + strand, within MPMX19_03860at 107.005 kb on - strand, within MPMX19_03860at 107.034 kb on + strand, within MPMX19_03860at 107.034 kb on + strand, within MPMX19_03860at 107.035 kb on - strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.127 kb on + strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.128 kb on - strand, within MPMX19_03860at 107.129 kb on + strand, within MPMX19_03860at 107.129 kb on + strand, within MPMX19_03860at 107.129 kb on + strand, within MPMX19_03860at 107.129 kb on + strand, within MPMX19_03860at 107.130 kb on - strand, within MPMX19_03860at 107.130 kb on - strand, within MPMX19_03860at 107.130 kb on - strand, within MPMX19_03860at 107.207 kb on + strandat 107.208 kb on - strandat 107.326 kb on + strandat 107.327 kb on - strandat 107.327 kb on - strandat 107.327 kb on - strandat 107.327 kb on - strandat 107.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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105,137 + MPMX19_03858 0.47 -1.1
105,137 + MPMX19_03858 0.47 +0.3
105,137 + MPMX19_03858 0.47 +0.2
105,137 + MPMX19_03858 0.47 -1.4
105,137 + MPMX19_03858 0.47 +0.3
105,138 - MPMX19_03858 0.47 -0.7
105,138 - MPMX19_03858 0.47 -0.0
105,138 - MPMX19_03858 0.47 -0.8
105,138 - MPMX19_03858 0.47 -1.7
105,138 - MPMX19_03858 0.47 +1.4
105,138 - MPMX19_03858 0.47 -0.2
105,140 + MPMX19_03858 0.47 -0.3
105,140 + MPMX19_03858 0.47 +0.4
105,140 + MPMX19_03858 0.47 -2.1
105,140 + MPMX19_03858 0.47 +0.6
105,140 + MPMX19_03858 0.47 -1.0
105,140 + MPMX19_03858 0.47 +0.5
105,140 + MPMX19_03858 0.47 +0.4
105,140 + MPMX19_03858 0.47 -1.1
105,141 - MPMX19_03858 0.47 -1.2
105,141 - MPMX19_03858 0.47 -0.1
105,141 - MPMX19_03858 0.47 -2.2
105,141 - MPMX19_03858 0.47 -0.4
105,141 - MPMX19_03858 0.47 -0.3
105,141 - MPMX19_03858 0.47 +0.0
105,141 - MPMX19_03858 0.47 -1.4
105,171 - MPMX19_03858 0.49 +0.5
105,171 - MPMX19_03858 0.49 -0.7
105,171 - MPMX19_03858 0.49 -1.4
105,171 - MPMX19_03858 0.49 -0.8
105,258 + MPMX19_03858 0.55 -0.4
105,371 + MPMX19_03858 0.63 -0.7
105,371 + MPMX19_03858 0.63 +0.3
105,371 + MPMX19_03858 0.63 -2.1
105,371 + MPMX19_03858 0.63 +0.2
105,371 + MPMX19_03858 0.63 -0.2
105,372 - MPMX19_03858 0.63 -1.8
105,372 - MPMX19_03858 0.63 -0.6
105,372 - MPMX19_03858 0.63 -0.7
105,372 - MPMX19_03858 0.63 -0.4
105,372 - MPMX19_03858 0.63 +1.2
105,372 - MPMX19_03858 0.63 -0.4
105,596 + MPMX19_03858 0.79 +1.2
105,596 + MPMX19_03858 0.79 +0.2
105,597 - MPMX19_03858 0.79 +0.3
105,597 - MPMX19_03858 0.79 -1.1
105,597 - MPMX19_03858 0.79 +0.3
105,597 - MPMX19_03858 0.79 -0.4
105,597 - MPMX19_03858 0.79 -1.7
105,620 + MPMX19_03858 0.80 -0.3
105,621 - MPMX19_03858 0.80 -0.7
105,621 - MPMX19_03858 0.80 -0.5
105,621 - MPMX19_03858 0.80 +0.8
105,621 - MPMX19_03858 0.80 -1.7
105,650 + MPMX19_03858 0.83 -1.4
105,650 + MPMX19_03858 0.83 +0.2
105,651 - MPMX19_03858 0.83 +0.7
105,651 - MPMX19_03858 0.83 -0.3
105,651 - MPMX19_03858 0.83 +1.1
105,651 - MPMX19_03858 0.83 -0.5
105,651 - MPMX19_03858 0.83 +1.2
105,651 - MPMX19_03858 0.83 -1.3
105,784 + +0.7
105,784 + +0.1
105,785 - +0.2
105,807 - +0.2
105,874 - +0.2
105,896 + -1.0
105,896 + +0.9
105,896 + -2.1
105,897 - -1.1
105,897 - +2.1
105,929 + +0.4
105,929 + -0.4
105,929 + -0.3
105,929 + +0.4
105,929 + -0.1
105,929 + -0.8
105,930 - -1.5
105,930 - -1.5
105,930 - +0.4
105,937 - -0.8
105,968 + -0.4
105,968 + +0.6
105,968 + +0.7
105,968 + -1.8
105,968 + -0.8
105,968 + -0.4
105,968 + +1.1
105,968 + +0.7
105,968 + -1.5
106,113 + MPMX19_03859 0.24 -1.6
106,114 - MPMX19_03859 0.25 -0.1
106,114 - MPMX19_03859 0.25 -1.7
106,114 - MPMX19_03859 0.25 +0.4
106,114 - MPMX19_03859 0.25 -1.3
106,115 + MPMX19_03859 0.25 -2.1
106,115 + MPMX19_03859 0.25 +0.6
106,179 + MPMX19_03859 0.36 -0.6
106,179 + MPMX19_03859 0.36 -1.1
106,180 - MPMX19_03859 0.36 -1.1
106,245 + MPMX19_03859 0.47 -0.7
106,246 - MPMX19_03859 0.47 -2.0
106,246 - MPMX19_03859 0.47 +0.7
106,535 + +0.1
106,670 + MPMX19_03860 0.11 +0.2
106,670 + MPMX19_03860 0.11 -2.2
106,671 - MPMX19_03860 0.12 -1.2
106,671 - MPMX19_03860 0.12 -1.7
106,671 - MPMX19_03860 0.12 +0.6
106,671 - MPMX19_03860 0.12 -1.4
106,693 + MPMX19_03860 0.15 -1.5
106,693 + MPMX19_03860 0.15 -0.8
106,693 + MPMX19_03860 0.15 -0.3
106,693 + MPMX19_03860 0.15 +0.6
106,730 + MPMX19_03860 0.21 -0.1
106,736 + MPMX19_03860 0.22 -1.2
106,736 + MPMX19_03860 0.22 -1.1
106,736 + MPMX19_03860 0.22 +0.5
106,737 - MPMX19_03860 0.22 +0.2
106,737 - MPMX19_03860 0.22 -0.3
106,737 - MPMX19_03860 0.22 +0.2
106,769 + MPMX19_03860 0.27 -0.6
106,769 + MPMX19_03860 0.27 -0.7
106,769 + MPMX19_03860 0.27 -0.7
106,769 + MPMX19_03860 0.27 -0.4
106,769 + MPMX19_03860 0.27 -1.3
106,769 + MPMX19_03860 0.27 -1.6
106,769 + MPMX19_03860 0.27 +1.7
106,769 + MPMX19_03860 0.27 -1.1
106,769 + MPMX19_03860 0.27 -1.0
106,769 + MPMX19_03860 0.27 -0.8
106,769 + MPMX19_03860 0.27 +0.0
106,770 - MPMX19_03860 0.27 +0.7
106,770 - MPMX19_03860 0.27 +0.3
106,770 - MPMX19_03860 0.27 -0.5
106,770 - MPMX19_03860 0.27 +0.2
106,770 - MPMX19_03860 0.27 -2.5
106,770 - MPMX19_03860 0.27 +1.5
106,770 - MPMX19_03860 0.27 +0.0
106,770 - MPMX19_03860 0.27 -0.3
106,770 - MPMX19_03860 0.27 -0.2
106,770 - MPMX19_03860 0.27 +0.9
106,770 - MPMX19_03860 0.27 -0.8
106,770 - MPMX19_03860 0.27 +1.3
106,770 - MPMX19_03860 0.27 -1.1
106,770 - MPMX19_03860 0.27 -2.3
106,770 - MPMX19_03860 0.27 +0.1
106,770 - MPMX19_03860 0.27 -0.6
106,770 - MPMX19_03860 0.27 -3.3
106,770 - MPMX19_03860 0.27 -0.3
106,770 - MPMX19_03860 0.27 -0.3
106,770 - MPMX19_03860 0.27 +0.2
106,770 - MPMX19_03860 0.27 -1.1
106,770 - MPMX19_03860 0.27 +1.4
106,845 + MPMX19_03860 0.39 -0.6
106,845 + MPMX19_03860 0.39 +0.2
106,845 + MPMX19_03860 0.39 -1.2
106,845 + MPMX19_03860 0.39 -1.6
106,868 + MPMX19_03860 0.43 -0.2
106,869 - MPMX19_03860 0.43 +0.0
106,881 + MPMX19_03860 0.45 -0.1
106,881 + MPMX19_03860 0.45 +1.2
106,881 + MPMX19_03860 0.45 -0.4
106,881 + MPMX19_03860 0.45 +1.3
106,881 + MPMX19_03860 0.45 -1.3
106,881 + MPMX19_03860 0.45 -1.6
106,881 + MPMX19_03860 0.45 +0.2
106,882 - MPMX19_03860 0.45 -0.8
106,882 - MPMX19_03860 0.45 -1.1
106,882 - MPMX19_03860 0.45 -1.2
106,882 - MPMX19_03860 0.45 -0.9
106,882 - MPMX19_03860 0.45 -1.1
106,882 - MPMX19_03860 0.45 +1.0
106,882 - MPMX19_03860 0.45 -1.1
106,882 - MPMX19_03860 0.45 +0.6
106,883 - MPMX19_03860 0.45 -0.4
106,962 - MPMX19_03860 0.58 +0.4
107,004 + MPMX19_03860 0.64 -0.3
107,004 + MPMX19_03860 0.64 -0.5
107,004 + MPMX19_03860 0.64 +1.0
107,004 + MPMX19_03860 0.64 -2.0
107,004 + MPMX19_03860 0.64 -1.0
107,005 - MPMX19_03860 0.64 -1.8
107,034 + MPMX19_03860 0.69 -0.5
107,034 + MPMX19_03860 0.69 -1.0
107,035 - MPMX19_03860 0.69 +0.4
107,127 + MPMX19_03860 0.84 -1.3
107,127 + MPMX19_03860 0.84 -0.7
107,127 + MPMX19_03860 0.84 +2.3
107,127 + MPMX19_03860 0.84 +0.3
107,127 + MPMX19_03860 0.84 +0.2
107,127 + MPMX19_03860 0.84 -0.2
107,127 + MPMX19_03860 0.84 -1.1
107,127 + MPMX19_03860 0.84 +1.4
107,127 + MPMX19_03860 0.84 -0.3
107,127 + MPMX19_03860 0.84 +1.7
107,128 - MPMX19_03860 0.84 +0.1
107,128 - MPMX19_03860 0.84 -1.7
107,128 - MPMX19_03860 0.84 -1.0
107,128 - MPMX19_03860 0.84 +1.7
107,128 - MPMX19_03860 0.84 -0.4
107,128 - MPMX19_03860 0.84 +0.1
107,128 - MPMX19_03860 0.84 +0.7
107,128 - MPMX19_03860 0.84 +1.3
107,128 - MPMX19_03860 0.84 -1.6
107,129 + MPMX19_03860 0.84 -0.5
107,129 + MPMX19_03860 0.84 -0.5
107,129 + MPMX19_03860 0.84 -0.2
107,129 + MPMX19_03860 0.84 +0.4
107,130 - MPMX19_03860 0.84 -0.8
107,130 - MPMX19_03860 0.84 -0.7
107,130 - MPMX19_03860 0.84 -0.3
107,207 + -1.0
107,208 - +0.2
107,326 + +0.6
107,327 - +0.7
107,327 - -0.4
107,327 - +0.3
107,327 - -0.6
107,327 - -0.1

Or see this region's nucleotide sequence